BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04540.1
Length=3031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487236 jgi|Araly1|487236|fgenesh2_kg.6__370__AT5G04540.1 4715 0.0
Ahg317855 jgi|Araly1|317855|fgenesh1_pm.C_scaffold_3000871 1589 0.0
> Ahg487236 jgi|Araly1|487236|fgenesh2_kg.6__370__AT5G04540.1
Length=3014
Score = 4715 bits (2553), Expect = 0.0
Identities = 2884/3040 (95%), Gaps = 38/3040 (1%)
Strand=Plus/Plus
Query 1 CGTATTTGGATGTCTCATTGTCTTTGTGGCAAAAAGGCAGCGTGCTAAATCCGTCCTTTG 60
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CGTATTTAGATGTCTCATTGTCTTTGTGGCGAAAAGGCAGCGTGCTAAATCCGTCCTTTG 60
Query 61 CCACCGTTGAGCGGCCGGTGAACCCCAAGCCGAATCACCGtctctcccacctctctctct 120
||||||||||||||| |||||| || || ||||||||||||||||| || |||||||
Sbjct 61 CCACCGTTGAGCGGCAGGTGAAGCCGAACCCGAATCACCGTCTCTCTCA----TCTCTCT 116
Query 121 cccctctctctctctcCTTTTTTACATGACGGCGCTGAGACCTCTCTCCGGGCGATCACG 180
||| || | | | | | ||||||||||||||||||||||||||| |||||||
Sbjct 117 ---CTC-CT-T-T-T-C------A-ATGACGGCGCTGAGACCTCTCTCCGGGAGATCACG 161
Query 181 ATCGCTGCGATGTTCGTCGGAGAAGATGGAAGGTACCGGAAGCTGGGACGTGCTTGAATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 162 ATCGCTGCGATGTTCGTCGGAGAAGATGGAAGGTACCGGAAGCTGGGACGTACTTGAATG 221
Query 241 GACTAAACTCGATTCAGCTTCATGGTCAGGCTCGTATTCGAATTTGGATTGCTTGCTGGA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 222 GACTAAACTCGATTCAGCTTCTTGGTCAGGCTCGTATTCGAATTTGGATTGCTTGCTGGA 281
Query 301 ATCTGAGAGGATCATCTTCGAGGCTTGTGGAGTTATTCTCATTAACACCGATGAGGCAGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 ATCTGAGAGGATCATCTTCGAGGCTTGTGGAGTTATTCTCATTAACACCGATGAGGCAGG 341
Query 361 GACCCTCTTGTTATCAAATTTCCGTATTCTGTTTTTGAGTGAAGGAACCAGAAAGCTTGT 420
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 342 GACCCTCTTATTGTCAAATTTCCGTATTCTGTTTTTGAGTGAAGGAACCAGAAAGCTTAT 401
Query 421 TCCACTTGGTACAATTCCATTTGTAGCTATCGAGAAGTTTAACAAACTGGCGCCGAAAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 402 TCCACTTGGTACAATTCCATTTGTAGCTATCGAGAAGTTTAACAAACTGGCGCTGAAAGT 461
Query 481 TCAATCAAACAAATATCACAACAATGAGAATGCACCGACACGACTTTTACAGGTCACTGG 540
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 462 TCAAGCAAACAAATATCACAACAACGAGAATGCACCGACACGACTTTTACAGGTCACTGG 521
Query 541 AAAAGATATGAGAATAGTTGTCTATGGTTTTCGACCTGGTACCAAGCAGAGACATACTGT 600
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 522 AAAAGACATGAGGATAGTTGTCTACGGTTTTCGACCTGGTACCAAGCAGAGACGTTCTGT 581
Query 601 AGTTGATACGCTATTGAGGTGTAACAAACCAGAGAGAGTATGGGATCTTTATGCTTTTAC 660
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 582 AGTTGATGCGCTATTGAGGTGTAACAAACCAGAGAGAGTATGGGATCTGTATGCTTTCAC 641
Query 661 ATGCGGACCTTCCCAATTCGGTAACACAAACCCAAAGGAAAGATTGCTTAATGAATATTT 720
||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATGTGGGCCTTCCAAATTCGGTAACACAAACCCAAAGGAAAGATTGCTTAATGAATATTT 701
Query 721 TCGCCTTCTCGGAAAAAGTTCACAACGAGCGTCAATGAATATGATTGAAGACGGTTCATT 780
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 702 TCGGCTTCTTGGAAAAAGTTCACAACGAGCGTCAATGAATATGATTGAAGACGGAACATT 761
Query 781 CACTCTATCCAATGATCTTTGGCGTATAACTAACTTAAACTCAAATTATGACTTGTGCCA 840
|||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 762 CACTCTGTCCAATGACCTTTGGCGTATTACTAACTTGAACTCAAATTATGACTTGTGTCA 821
Query 841 GAGTTATCCGTTTGCTTTGATGGTTCCAAAATCCATTAGTGATGAAGAGCTGCTCCAGAC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 822 GAGTTATCCGTTTGCTTTGATGGTTCCAAAATCCATTAGTGATGAAGAGCTGATCCAGAC 881
Query 901 TTCTACTTTCCGGGCAAGATGTCGCTTACCTGTGATCTCGTGGTGTCATCCAGGAAGTGG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GTCTACTTTCCGGGCAAGATGTCGCTTACCTGTGATCTCGTGGTGTCATCCAGGAAGTGG 941
Query 961 AGCTGTGATTGCTCGCTCATCACAACCTTTAGTTGGTCTGATGATGAACATGAGGAGTAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AGCTGTGATTGCTCGCTCATCACAACCTTTAGTTGGTCTGATGATGAACATGAGGAGTAC 1001
Query 1021 CTCTGATGAGAAACTTGTTGCTTCATTCTGCACTCAATTAGCTGGTCATAAGGGAGCACG 1080
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1002 CTCTGATGAGAAACTTGTCACTTCATTCTGCACTCAATTAGCTGGTCATAAGGGATCACG 1061
Query 1081 AAGGAAGCTTTATATCGTAGATGCAAGACCTAGGAAAAATGCATTAGCAAATGGAGCAAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AAGGAAGCTTTATATCGTAGATGCAAGACCTAGGAAAAATGCATTAGCAAATGGAGCAAA 1121
Query 1141 GGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAATTGtttttttGGGGAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAATTGTTTTTTTGGGGAT 1181
Query 1201 AGACAACATACATGCAATGAGAGAGAGCTTTTCCCGCCTTAGGGATTATTTAGATATGCA 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1182 AGACAACATACATGCAATGAGAGAGAGTTTTTCCCGCCTTAGGGATTATTTAGATATGCA 1241
Query 1261 TGGTACAACATCATCCGATGGGACGTCATCATTCTTGAGGCATGGTGGCTGGACGTGGGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGGTACAACATCATCCGATGGGACGTCATCATTCTTGAGGCATGGTGGCTGGACGTGGGG 1301
Query 1321 TGGAGGTAATCTCAGTAGTATGTCTGCTTCAGTATCCGTGCTTGGAGATAGTGGTTGGTT 1380
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 1302 TGGAGGTAATCTCAGTAGTATGTCGGCTTCAGTATCCTTGCTTGGAGATAGTGGGTGGTT 1361
Query 1381 GAGTCACATTCAGAGCATCTTAGCTGGTGTAGCATGGATTGCTGCACGTGTTGCTATGGA 1440
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GAGTCACATCCAGAGCATCTTAGCTGGTGTAGCATGGATTGCTGCACGTGTTGCTATGGA 1421
Query 1441 GTCAGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTGGTTTC 1500
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GTCGGCATCAGTTCTCGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTGGTTTC 1481
Query 1501 TCTTGCATGCTTATTGCTTGATCCTTACTACAGAACATTTTCTGGGTTTCAGGCTCTTGT 1560
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1482 TCTTGCATGCTTATTGCTTGATCCATACTACAGAACATTTTCTGGGTTTCAGGCTCTTGT 1541
Query 1561 CGAAAAGGATTGGTTATCATTTGGTCACCCATTTTCGGATCGGGTGGGAATGCCAAACGT 1620
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1542 CGAAAAGGATTGGTTAGCATTTGGTCACCCATTTTCGGATCGAGTGGGAATGCCTAACGT 1601
Query 1621 GTCTGAATCTGGTAATTTTGAATTACCAATTCAGTCTTCTTCTGCTCGAAGTTTTCCTTC 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1602 GTCTGAATCTGGTAATTTTGAATTACCAATTCAGTCTTCTTCTGCTCGAAGTTTCCCTTC 1661
Query 1681 ATCTCCAGTGCGGCAATCTCCAGGATCAGCAGCTGCTCAATCCTCTAGCTCTTCATATGG 1740
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1662 ATCTCCAGTGCGGCAATCTCCAGGATCAGCAGCTGCTCAATCTTCTAGCTCTTCATATGG 1721
Query 1741 GCTGAACAACTATTCTCCTATATTTTTGCAGTGGCTTGATTGCATTTCACAGCTAATGCG 1800
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1722 GCTGAACAACTATTCTCCTATATTTTTGCAGTGGCTTTATTGCGTTTCACAGCTAATGCG 1781
Query 1801 GATGTATCCTTCTGCTTTCGAGTTTTCTCCGACTTTTCTGGTAGATTTCATAGACTGCTT 1860
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1782 GATGTATCCTTCTGCTTTCGAGTTTTCTCCGACTTTCCTGGTAGATTTCACGGACTGCTT 1841
Query 1861 GCTTTC-GTGTCGTTTTGGGAACTTTTTGTGCAATAGTGAAAAAGAGAGGCAGCAATGTG 1919
|||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1842 GCTTTCAG-GTCGTTTTGGGAACTTTTTGTGTAATAGTGAAAAAGAGAGGCAGCAATGTG 1900
Query 1920 GGATTTCTGAAACCTGTGGATGCATTTGGGCCTACTTGGCTGATTTGCGTTCCTCCAGTG 1979
||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||
Sbjct 1901 GGATTTCTGAAACCTGTGGATGCCTTTGGGCCTACTTGGCCGATTTGCGTTCTTCCGGTG 1960
Query 1980 GAACTTCTCATGTCCACTGTAACCCATTTTATGATCCTTCAAGATATGATGGCCCATTAT 2039
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1961 GAACTTCTCATGTCCATTGTAATCCATTTTATGATCCTTCAAGATATGATGGCCCATTAT 2020
Query 2040 TACCTCCTGCAGCAGCTCTAGCCCCAACTCTCTGGCCCCAGTTCCATCTCCGGTGGGCCT 2099
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2021 TACCTCCTGCAGCAGCTCTAGCCCCGACTCTCTGGCCCCAGTTCCATCTCCGGTGGGCCT 2080
Query 2100 GCCCTGTGGAGCCGAACGTCACAGAAACCGAAGACCAATGTAGAGCCATGACTGTTAAGT 2159
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 2081 GCCCTGTGGAGCCGAACGCCACAGAAACCGAGGACCAATGTAGAGCCATGACTGCTAAGT 2140
Query 2160 ATTCAGAAATGAAGAAGGAAAAAGAAGAAGCAGAGAGAAAGGTAGATGAGTTATCTTCTG 2219
||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||
Sbjct 2141 ATTCAGAAATGAAGAAGGAGAAAGAAGAAGCAGAAAGGAAGGTAGACGAGTTATCTTCTG 2200
Query 2220 CAATGGAGTCATTGAACGAAGAGTTACTGAACGAGAGAGATATAAGCCGTGCAGCTAGAG 2279
|| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2201 CAGTGGAATCATTGAGCGAAGAGTTACTGAACGAGAGAGATATAAGCCATGCAGCTAGAG 2260
Query 2280 AATCAGCAAAGAGGGCTACAAAAGAGCGTGCAGTCATATCACGAGCTGTGCAGTCACTCG 2339
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 AATCAGCAAAGAGAGCTACAAAAGAGCGTGCAGTCATATCACGAGCTGTGCAGTCACTCG 2320
Query 2340 GCTGCAAAGTTAAATTCACAAGAAACGGAGATTGCACAGTTGAAGTAGAAGACGGGCCTC 2399
||||||||||||||||||||| |||||||||||||||||| ||||||||||| || || |
Sbjct 2321 GCTGCAAAGTTAAATTCACAAAAAACGGAGATTGCACAGTCGAAGTAGAAGATGGTCCAC 2380
Query 2400 AGAAATGTTCACACTCAATTCCCCAAAAACAATCTGAGGACAACACCACAGATGTCTCAG 2459
||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 2381 GGAAATGTTCTCACTCAATTCCCCAAAAACCATCTGAGGATAACACAACAGATGTCTCAG 2440
Query 2460 AATCTATCTCATCGGTTACTGAACAAAATGTGTGTGAAGCAGTGTGTCCGTTGCGTACAA 2519
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2441 AATCTATCTCATCGGTGACTGAACAAAATGTTTGTGAAGCATTGTGTCCGTTGCGTACAA 2500
Query 2520 GAGAAGGAACGTGTAGATGGCCTGATGCGGGTTGTGCTC-GAATCGGGAACCAATTTCTC 2578
||||||||| |||| || ||||||||||||||||||||| || |||||| |||||||||
Sbjct 2501 GAGAAGGAATGTGTCGACGGCCTGATGCGGGTTGTGCTCAGA-TCGGGAGCCAATTTCTT 2559
Query 2579 GGGTTGAAAACAAACTTTGAAGCGTTTGATAATCTATGCGTCTACGACAGCTATTTCACA 2638
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2560 GGGTTAAAAACAAACTTTGAGGCGTTTGATAATCTCTGCGTCTACGACAGCTATTTCACA 2619
Query 2639 GCTGAATGAGAGACCAAGTTTTCACCAGATTGACCAAAAATGAAGAACCTGTGTGTAttt 2698
|||||||||||| |||||||| |||||||| |||| |||| | ||||||||||||||||
Sbjct 2620 GCTGAATGAGAGTCCAAGTTT-CACCAGATCGACCCGAAATCATGAACCTGTGTGTATTT 2678
Query 2699 tttttGACAGAGTAAGGCATAGCAAACACCAAT-GAGGAACAGAATCATCAATAAAACCC 2757
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 2679 TTTTTGACAGAGTAAGGCATAGCAAACAGCAACAGAGGAACAGAATCATCAATAAAACCC 2738
Query 2758 CAT-AAAAAGGCGGTACAAAACCGCCAAACCAAGAGCGTTTTGGAAAGTGGGTGCGCTTC 2816
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2739 CATTAAAAAGGCGGTACAAAACCGCCAAACCAAGAGCGTTTTGGAAAGTGGGTGCGCATC 2798
Query 2817 GGGAACTAACTTCTTGTATAGGCAATGCGATCATGTATAGACTAGA--GTCTGCTGCAGG 2874
||||||||||||||||||||| |||||||||||||||||||||||| | | |||||||
Sbjct 2799 GGGAACTAACTTCTTGTATAG-CAATGCGATCATGTATAGACTAGATAGGGT-CTGCAGG 2856
Query 2875 TTGCTGGCTTCATTGAGAACGTTAGATTTGT--T--ATTTTATTTTTGTTGGTTGATGAA 2930
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 2857 TTGCTGGCTTCATTGAGAACGTTAGATTTGTGATTTATTTTATTTTTGTTGGTTGAT-AA 2915
Query 2931 ATGACT-AAA-GATTGAAAGTTATGTACAAATTTCTTAACGAATTTGTTGTAACGAAAAC 2988
|||| | ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2916 ATGATTTAAAAGATTGAAAGTTATGTACAA-TTTCTTAACGAATTTGTTGTAACTAAAAC 2974
Query 2989 TGATAATAGGATTATTGAGACGACAACAGCTATTATTATC 3028
|||| |||||||||||||||| ||||||| |||||| |||
Sbjct 2975 TGATTATAGGATTATTGAGACAACAACAGTTATTATAATC 3014
> Ahg317855 jgi|Araly1|317855|fgenesh1_pm.C_scaffold_3000871
Length=2487
Score = 1589 bits (860), Expect = 0.0
Identities = 1287/1489 (86%), Gaps = 45/1489 (3%)
Strand=Plus/Plus
Query 200 GAG-AAGATGGAAGGTACCGGAAGCTGGGACGTGCTTGAATGGACTAAACTCGATTCAGC 258
||| |||||||| |||||||| || |||||| |||||||||||| ||||||||||||||
Sbjct 93 GAGCAAGATGGATGGTACCGGTAGTTGGGACACGCTTGAATGGACCAAACTCGATTCAGC 152
Query 259 TTCA---T---GGTCAGGCTC--G---TAT-TCGAATTTGGA-TTGCTTGCTGGAATCTG 305
|||| | ||||||| || | | | |||||||| || ||||||||||||||| |
Sbjct 153 TTCAGGGTCAGGGTCAGGTTCAGGTTCTTTCTCGAATTT-GAGTTGCTTGCTGGAATCGG 211
Query 306 AGAGGATCATCTTCGAGGCTTGTGGAGTTATTCTCATTAACACCGATGAGGCAGGGACCC 365
||||| ||||| |||||| || ||||||| |||| ||||||||||| || ||||| || |
Sbjct 212 AGAGGGTCATCGTCGAGGGTTATGGAGTTGTTCTTATTAACACCGACGAAGCAGGAACTC 271
Query 366 TCTT-GTTATCAAATTTCCGTATTCTGTTTT-TGAGTGAAGGAACCAG-AAAGCTTGTTC 422
| || || | |||||||||||||||| |||| |||||||||||||||| |||| | |||
Sbjct 272 TATTGGTGA-CAAATTTCCGTATTCT-TTTTCTGAGTGAAGGAACCAGAAAAG-TCATTC 328
Query 423 CACTTGGTACAATTCCATTTGTAGCTATCGAGAAGTTTAACAAACTGGCGCCGAAAGTTC 482
||||||| || |||||||| | | |||| ||||||||||||||| ||| || ||||||||
Sbjct 329 CACTTGGAACCATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTGCTGAAAGTTC 388
Query 483 AATCAAACAAATATCACAAC-AATGAGAATGCACCGACACGACTTTTACAGGTCACTGGA 541
|||||| | ||| | | ||||| |||| | ||| |||||||||||||||||
Sbjct 389 AATCAAGCCCCCGTCA-GTCTGACAAGAATCCACCAAGACGTCTTTTACAGGTCACTGGC 447
Query 542 AAAGATATGAGAATAGTTGTCTATGGTTTTCGACCTGGTACCAAGCAGAGACATACTGTA 601
||||| ||||| ||| |||| ||||| ||||| ||| | ||||||||||||| || |||
Sbjct 448 AAAGACATGAGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGACGTAATGT- 506
Query 602 G-TTGATACGCTATTGAGGTGTAACAAACCAGAGAGAGTATGGGATCTTTATGCTTTTAC 660
| ||||| | || ||| ||||| ||| |||||||||||||||||||| ||| | ||| |
Sbjct 507 GTTTGATGCATTACTGAAGTGTAGCAAGCCAGAGAGAGTATGGGATCTATATACGTTTGC 566
Query 661 ATGCGGACCTTCCCAATTCGGTAACACAAACCCAAAGGAAAGATTGCTTAATGAATATTT 720
|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATGCGGTCCTTCCAAATTTGGTAACACAAACCCAAAGGAAAGATTGCTTAATGAATATTT 626
Query 721 TCGCCTTCTCGGAAAAAGTTCACA-ACGAGCGTCAATGAATATGATTGAAGACGGTTCAT 779
|| |||||||||| ||||||| | |||||| |||||| ||||||||||||| ||||| |
Sbjct 627 CCGTCTTCTCGGAAGAAGTTCA-ATACGAGCATCAATGGATATGATTGAAGATGGTTCGT 685
Query 780 TCAC-TCTATCCAATGATCTTTGGCGTATAA-CTAACTTAAACTCAAATTATGACTTGTG 837
|||| | | ||||| || || ||||| |||| | | ||| ||||| ||||| |||||||
Sbjct 686 TCACAT-TGTCCAACGAGCTGTGGCGGATAAGCGA-CTTGAACTCCAATTACAACTTGTG 743
Query 838 CCAGAGTTATCCGTTTGCTTTGATGGTTCCAAAATCCATTAGTGATGAAGAGCTGCTCCA 897
|||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 744 TCAGACTTATCCATTTGCTTTTATGGTTCCAAAATCCATAAGTGATGAAGAGCTGCTCCA 803
Query 898 GACTTCTACTTTCCGGGCAAGATGTCGCTTACCTGTGATCTCGTGGTGTCATCCAGGAAG 957
| | | | ||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 804 GGCGTGTTCTTTCCGAGCAAGATGTCGCTTACCTGTGATCACGTGGTGTCAGCCAGGAAG 863
Query 958 TGGAGCTGTGATTGCTCGCTCATCACAACCTTTAGTTGGTCTGATGATGAACATGAGGAG 1017
||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 864 TGGAGCTGTGATTGCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAATATGAGGAG 923
Query 1018 TAACTCT-GATGAGAAACTTGTTGCTTCATTCTGCACTCAATTAGCTGGT-CATAAGGGA 1075
||| ||| ||||| |||||||||||| |||||||| |||||||| ||||| | |||||||
Sbjct 924 TAA-TCTTGATGAAAAACTTGTTGCTGCATTCTGCTCTCAATTACCTGGTGC-TAAGGGA 981
Query 1076 GCACGAAGGAAGCTTTATATCGTAGATGCAAGACCTAGGAAAAATGCATTAGCAAATGGA 1135
| |||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||
Sbjct 982 GAACGAAGGAAGCTTTATATTGCCGATGCAAGACCTAGGAAGAATGCATTAGCCAATGGA 1041
Query 1136 GCAAAGGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAATTGtttt-ttt 1194
|||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1042 GCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTT 1101
Query 1195 GGGGATAGACAACATACATGCAATGAGAGAGAGCTTTTCCCGCCTTAGGGATTATTTAGA 1254
|| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1102 GGC-ATAGACAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGA 1160
Query 1255 TATGCATGGTACAACATCATCCGATGGGACG-TCATCATTCTTGAGGCATGGTGGCTGGA 1313
||||||||||||||||||||| ||||||| | ||||| |||||||| || ||||| ||||
Sbjct 1161 TATGCATGGTACAACATCATCTGATGGGA-GATCATCGTTCTTGAGACACGGTGGTTGGA 1219
Query 1314 CGTGGGGTGGAGGTAATCTCAGTAGTATGTCTGCTTCAGTATCCGTGCTTGGAGATAGTG 1373
| ||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 1220 CCTGGGGAGGAGGTAATCTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTG 1279
Query 1374 GTTGGTTGAGT-CACATTCAGAGCATCTTAGCTGGTGTAGCATGGATTGCTGCACGTGTT 1432
| ||||||| | ||||| |||||| |||||||||||| ||||||||| ||||||||||||
Sbjct 1280 GCTGGTTGA-TACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATAGCTGCACGTGTT 1338
Query 1433 GCTATGGAGTCAGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAG 1492
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1339 GCTATGGAGTCGGCATCAGTTCTTGTGCACTGCAGTGATGGGTGGGACAGAACAACTCAG 1398
Query 1493 CTGGTTTCTCTTGCATGCTTATTGCTTGATCCTTACTACAGAACATTTT-CTGGGTTTCA 1551
|| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1399 CTTGTTTCTCTTGCATGCTTATTGCTTGATCCATACTACAGAAC-TTTTGCTGGGTTTCA 1457
Query 1552 GGCTCTTGTCGAAAAGGATTGG-TTATCATTTGGTCACCCATTTTCGGATCGGGTGGGAA 1610
|||||||||||||||||||||| || | ||||| ||||||||||||||||| || ||||
Sbjct 1458 GGCTCTTGTCGAAAAGGATTGGCTTG-CTTTTGGGCACCCATTTTCGGATCGTGTAGGAA 1516
Query 1611 TGCCAAACGTGTCTGAATCTGGTAATTTTGAATTACCAATTCAGTCTTC 1659
|||| ||| | || | ||||||||||||||| ||||||| || |||||
Sbjct 1517 TGCCTAACATATCAGGATCTGGTAATTTTGACTTACCAAGGCACTCTTC 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114461186225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5