BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04550.1
Length=2580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939856 jgi|Araly1|939856|scaffold_600400.1 2981 0.0
> Ahg939856 jgi|Araly1|939856|scaffold_600400.1
Length=1842
Score = 2981 bits (1614), Expect = 0.0
Identities = 1750/1817 (96%), Gaps = 4/1817 (0%)
Strand=Plus/Plus
Query 192 GGTTGAGAGAAGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 251
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 GGTTGAGAGAGGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 68
Query 252 CATGATGGTCATAAAGATAAGGCGGTTCTAGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 311
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 69 CATGATGTTCATAAAGATAAGGCGGTGCTCGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 128
Query 312 TTGTCGAAGCTTGTTCATTTGTGGCAGTCATTAAGTGATAAGAATGTTGCAAGGCTTAGG 371
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 129 TTGTCGAAGCTTGTTCATTTGTGGCAGTCACTAAGTGATAAGAATGTTGCAAGGCTTAGG 188
Query 372 GACGAGATTACACATTCCACTGGTATAAAGAAGTTAGTTTCAGAAGATGATGATTTTATT 431
||||||||||| |||||||| |||||||||||| |||||||||| || |||||||||||
Sbjct 189 GACGAGATTACGCATTCCACCGGTATAAAGAAGCTAGTTTCAGAGGACGATGATTTTATC 248
Query 432 GTGAGGTTAATACGTGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTGGCT 491
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 249 GTCAGGTTGATACGCGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTTGCT 308
Query 492 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAGTGCTTTGAGAATTGTTTTAGTGAT 551
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAATGCTTTGAGAATTGTTTTAGTGAT 368
Query 552 ATGATGAAGACTGGAGCTGACCCTTATGGTTGGCAGTTTGGGTGGAAGAAAATGGATAAG 611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 369 ATGATGAAGACTGGAGCTGACCCTTATGGGTGGCAGTTTGGGTGGAAGAAAATGGATAAG 428
Query 612 AAAGCTAAGAAAATGGAACGTTTCATATCATCTAATGCTAGTCTCTACCAGGAGACTGAG 671
||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 429 AAAGCAAAGAAAATGGAACGTTTCATCTCATCAAATGCTAGCCTCTACCAGGAGACTGAG 488
Query 672 ATTCTTGCTGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCTACTGAC 731
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 489 ATTCTGGCCGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCAACTGAC 548
Query 732 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACACGAAGTGAAGAATCTGCGG 791
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 549 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACATGAAGTGAAGAATCTGCGG 608
Query 792 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCATTCTCTTGGTTAGATCAGTT 851
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 609 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCCTTCTCTTGGTTAGATCAGTT 668
Query 852 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGCATT-AGTTACAGAGTGGAAGCAAG 910
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 669 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGC-TTGAGTTACAGAATGGAAGCAAG 727
Query 911 TGATGTTAGCTCTGCAGATTCTGATTTTATTGGCCGCAGCCACTCCGTTTCTACTATTTT 970
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 728 TGATGTTAGCTCTGCAGATTCTGATTTCATTGGCCGCAGCCACTCGGTTTCTACAATTTT 787
Query 971 AACTCCTGTATCTCATAAATCTGAGTCTAGTGGTCTTCCTAGATTTGCTTCTGGCCCCCT 1030
||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 788 AACTCCTGTATCTCATAAATCTGAGACTAGCGGTCTTCCTAGATTTGCTTCTGGTCCCCT 847
Query 1031 TGGAAGATTTACCGGTCCAGCATCGGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 1090
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 848 TGGAAGATTTACCGGTCCAGCATCAGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 907
Query 1091 TTTCCTTTCGGGTTCTCTCAGCGCCGAATCACCTAAGTCAGGTCCTCTTGTTGCAGAAAA 1150
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 908 TTTCCTTTCCGGTTCTCTCAGCGCCGAATCCCCTAAGTCAGGTCCTCTTGTTGCAGAAAA 967
Query 1151 ACACAAACGTTTCAAGTTTTACTCTGGTCAGCTTGGGAAGATCACCTCCAAATCAGGACC 1210
|||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 968 ACACAAACGTTTCAAGTTTTACTCAGGCCAGCTCGGGAAAATCACCTCCAAATCAGGACC 1027
Query 1211 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACCCCGGAAAGGCCTTCAAT 1270
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1028 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACACCGGAAAGACCTTCAAT 1087
Query 1271 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGATTAACACAGGTTGGCCCATTTAAAGG 1330
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1088 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGGTTAACACAGGTTGGCCCGTTTAAAGG 1147
Query 1331 CTGTATGGTGTCTCACGATGGGATTACGCCTCTCAGCACTAGGGCCCGGAATGGAGCTAG 1390
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1148 CTGTATGGTGTCTCACGATGGGATTACTCCTCTCAGCACTAAGACCCGGAATGGAGCTAG 1207
Query 1391 GAATAGTAGTGCTGAGCATCACATTCTTGAA-GATAATTCTAACTCTGTTCACGTTGAAA 1449
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1208 GAATAGTAGTGCTGAGCATCACATTCTTGAAGGA-AATTCTAACTCTGTCCACGTTGAAA 1266
Query 1450 ACTTGACACTTCCTTCCCGACCCAAGCTGTCAGATGCTGCTCCTAATACCCTTGGTACCG 1509
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | |
Sbjct 1267 ACTTGACACTTCCTACCCGACCTAAGTTGTCAGATGCTGCTCCTAATACCCTTGGTGCAG 1326
Query 1510 CTTGCTTAGCATTACACTATGCTAATGTCATCATCGTGATAGAGAGATTTGTTGCGTCTC 1569
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1327 CTTGCTTAGCATTACACTATGCAAATGTCATCATCGTGATAGAGAGATTTGTTGCATCTC 1386
Query 1570 CTCACTTGATAGGAGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1629
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 CTCACTTGATAGGCGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1446
Query 1630 GAACATCGCTTAGAGAAAGGCTAAAACCTTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1689
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1447 GAACATCGCTTAGAGAAAGGCTAAAACCGTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1506
Query 1690 ATGATCCAGGCCTAGCAAGAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1749
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 ATGATCCAGGACTAGCAAAAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1566
Query 1750 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1626
Query 1810 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1686
Query 1870 CAGAAGCCATCATTACCGAGCTTCTCGTAGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1929
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1687 CAGAAGCCATCATTACCGAGCTTCTTGTTGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1746
Query 1930 AACTCAATGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1989
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 AACTTAACGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1806
Query 1990 ACACAGATAACTAGTGA 2006
|||||||||||||||||
Sbjct 1807 ACACAGATAACTAGTGA 1823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97282485730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5