BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04590.1
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939859 jgi|Araly1|939859|scaffold_600403.1 3483 0.0
> Ahg939859 jgi|Araly1|939859|scaffold_600403.1
Length=2158
Score = 3483 bits (1886), Expect = 0.0
Identities = 2084/2177 (96%), Gaps = 23/2177 (1%)
Strand=Plus/Plus
Query 28 ctcttctctctctctGAAGCGATGTCATCGACGTTTCGAGCTCCGGCGGGAGCCGCTACT 87
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 CTC-TCTCTTTCTCTGAAGCGATGTCATCGACGTTTCGAGCTCCGGCGGGCGCCGCCACT 59
Query 88 GTGTTTACGGCGGATCAGAAGATCAGACTTGGGAGGCTCGACGCTCTGAGATCCTCTCAT 147
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGTTTTCGGCGGATCAGAAGATCAGACTTGGGAGGCTCGACGCTCTGAGATCCTCTCAT 119
Query 148 TCTGTTTTCTTAGGAAGATATGGACGCGGCGGCG-TCCCGGTTCCTCCTTCCGCTTCTTC 206
|||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||
Sbjct 120 TCTGTTTTCTTAGGAAGATATGGACGCGCCGGCGTTTCC-GTTCCTCCTTCCGCTTCTTC 178
Query 207 GTCGAGTTCTTCGCCTATTCAAGCCGTCTCCACTCCTGCGAAGCCTGAGACTGCGACCAA 266
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 179 GTCGAGTTCTTCGCCTATTCAAGCCGTCTCCACGCCTGCGAAGCCTGAGACTACGACCAA 238
Query 267 GCGGAGCAAAGTCGAAATTATCAAGGAGAAGAGTAATTTCATAAGGTATCCTTTGAACGA 326
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 GCGGAGCAAAGTCGAAATAATCAAGGAGAAGAGTAATTTCATAAGGTATCCTTTAAACGA 298
Query 327 GGAGCTTTTAACAGAGGCTCCAAATGTCAACGAGTCAGCCGTGCAGCTTATCAAGTTCCA 386
|||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct 299 GGAGCTTTTAACAGAGGCTCCAAACGTCAACGAGTCGGCCGTGCAGCTCATTAAGTTCCA 358
Query 387 CGGTAGCTACCAACAGTACAACAGAGAAGAACGTGGTGGAAGATCTTACTCCTTCATGCT 446
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 359 CGGTAGCTACCAACAGTACAACAGAGAGGAACGTGGTGGAAGATCTTACTCATTCATGCT 418
Query 447 TCGAACTAAGAATCCATCTGGGAAGGTCCCTAACCAGCTCTATTTGACTATGGATGACTT 506
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 TCGAACTAAGAATCCATCTGGGAAGGTCCCTAACCAGCTCTACTTGACTATGGATGACTT 478
Query 507 AGCTGATGAGTTTGGAATTGGTACTCTTCGTTTGACCACAAGGCAGACGTTTCAGCTTCA 566
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 479 AGCCGATGAGTTTGGAATTGGTACGCTTCGTTTGACCACCAGGCAGACGTTTCAGCTCCA 538
Query 567 TGGTGTTCTGAAGCAGAATCTTAAGACTGTGATGAGCTCGATTATTAAAAATATGGGTAG 626
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 539 TGGTGTTCTGAAGCAGAATCTGAAGACCGTGATGAGCTCGATTATTAGAAATATGGGTAG 598
Query 627 CACGCTTGGTGCATGTGGTGATCTGAACAGAAATGTTCTTGCTCCTGCTGCACCTTATGT 686
||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 599 CACTCTTGGTGCATGTGGTGATCTGAACAGAAATGTTCTTGCTCCAGCGGCGCCTTATGT 658
Query 687 GAAGAAAGACTATCTCTTTGCACAAGAAACTGCTGACAACATTGCGGCTCTTCTTTCTCC 746
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 659 GAAGAAAGACTATCTCTTTGCACAAGAAACAGCTGACAACATTGCGGCTCTTCTTTCTCC 718
Query 747 TCAATCAGGGTTCTATTATGATATGTGGGTTGATGGAGAGCAGTTCATGACTGCTGAACC 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 TCAATCAGGGTTCTATTATGATATGTGGGTTGATGGAGAGCAGTTCATGACTGCTGAGCC 778
Query 807 TCCAGAGGTAGTGAAGGCTCGAAATGATAACTCCCATGGAACTAACTTTGTCGACTCTCC 866
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 TCCGGAGGTAGTGAAGGCTCGAAATGATAACTCCCATGGGACTAACTTTGTCGACTCTCC 838
Query 867 TGAGCCCATCTATGGCACCCAGTTCTTGCCTAGAAAGTTCAAGGTCGCTGTAACTGTTCC 926
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 839 TGAGCCCATCTATGGCACCCAGTTCTTGCCTAGGAAGTTCAAGGTCGCTGTAACTGTGCC 898
Query 927 TACAGATAATTCCGTCGACCTCCTCACCAATGACATTGGCGTTGTTGTTGTTTCAGATGA 986
||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 899 TACGGATAATTCTGTCGACCTCCTCACCAATGACATTGGTGTTGTTGTCGTTTCAGATGA 958
Query 987 AAATGGGGAACCACAGGGTTTCAATATTTATGTTGGTGGGGGTATGGGAAGAACACACAG 1046
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAATGGGGAACCACAAGGTTTCAATATTTATGTTGGTGGGGGTATGGGAAGAACACACAG 1018
Query 1047 AATGGAGTCTACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAAGATAT 1106
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1019 AATGGAGTCCACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAGGATAT 1078
Query 1107 TTTGTATGCTGTGAAGGCCATTGTAGTCACACAGCGAGAACACGGGAGACGAGATGATCG 1166
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1079 TTTGTATGCTGTGAAAGCCATTGTAGTCACACAACGAGAACACGGGAGACGAGATGATCG 1138
Query 1167 TAAATATAGCAGAATGAAATATTTGATCAGCTCCTGGGGAATTGAGAAGTTCAGAGATGT 1226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 TAAATATAGCAGAATGAAATATTTGATCAGCTCCTGGGGAATTGAGAAATTCAGAGATGT 1198
Query 1227 TGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTT 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTT 1258
Query 1287 CAAGAGTTACTTGGGATGGCATGAACAGGGAGATGGTGCATGGTTTTGTGGGCTTCACGT 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAAGAGTTACTTGGGATGGCATGAACAGGGAGATGGTGCATGGTTTTGTGGGCTTCACGT 1318
Query 1347 AGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACGCTGAGAGAAGTAATAGAGAAATA 1406
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1319 GGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACACTGAGAGAAGTGATAGAGAAATA 1378
Query 1407 CAAAATTGATGTCCGCATCACACCAAACCAAAACATTGTCTTGTGTGATATAAAGACTGA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 CAAAATTGATGTCCGCATCACACCAAACCAAAACATTGTCTTGTGTGATATAAAGACCGA 1438
Query 1467 ATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGCAACCTGAGTTTGT 1526
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 ATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTGCTGCAACCTGAGTTTGT 1498
Query 1527 CGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCTTTTCCTTTGTGCCCTCTGGCAAT 1586
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1499 GGACCCATTAAACCAAACCGCAATGGCTTGCCCAGCTTTTCCTTTGTGTCCTCTGGCAAT 1558
Query 1587 AACTGAGGCAGAGCGCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAA 1646
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1559 AACCGAGGCAGAGCGCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAGAA 1618
Query 1647 GGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAAACGGCTG 1706
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1619 GGTTGGTCTGGACTACGATGAATCTGTTGTGATAAGAGTAACTGGTTGTCCAAACGGCTG 1678
Query 1707 TGCAAGACCGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGGT 1766
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TGCAAGACCATACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGGT 1738
Query 1767 TTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATGGATAAGGTTAA 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATGGATAAGGTTAA 1798
Query 1827 GGTTCACGACTTAGAGAAAGTCTGCGAGCCATTGTTCTATCACTGGAAACTAGAGAGGCA 1886
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 1799 GGTTCACGACTTAGAGAAAGTGTTCGAGCCATTGTTTTATCACTGGAAACTAGAGAGGCA 1858
Query 1887 AACTAAAGAATCATTTGGAGAATACACAACCCGCATGGGATTCGAGAAACTGAAGGAGCT 1946
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AACCAAAGAATCATTTGGAGAATACACAACCCGCATGGGATTCGAGAAACTGAAGGAGCT 1918
Query 1947 GATAGATACATACAAAGGAGTTTCTCAATGAGCACAACAGAGATCATCTTTCGTTTTATA 2006
||||||| ||||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct 1919 GATAGATTCATACAAAGGAGTTTCTCAATAAGG-CA-CAGAGATCATCTTTCGTCTTATA 1976
Query 2007 AT-TCATGTAATGTAATGTCTCTGTCTGAACTGTTACTCTTCGGTAACTCTGATGGAGAA 2065
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1977 AAATCATGTAATGTAATGTCTCTGTCTGAACTGTTACTCTTCGGTAACTTTGATGGAGAA 2036
Query 2066 CTTGTTCTCGTTTTGGTTTGATTTTGTACCCTCttttttttttttgtttttttGGATTGC 2125
|||||||||||||||||||||||||||||| | |||||||| | | |||||
Sbjct 2037 CTTGTTCTCGTTTTGGTTTGATTTTGTACC-T-TTTTTTTT----G-------G-ATTGC 2082
Query 2126 TTTGTCTTTG-ATTGGATAATGAAGCATTACTGTATCAAGGCTAATTAGCCCATCAATAA 2184
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 TTTGTCTTTTTATTGGATACTGAAGCATTACTGTATCAAGGCTAATTAGCCCATCAATAA 2142
Query 2185 GCCTTTT-TAAAGCTCT 2200
||||||| ||| |||||
Sbjct 2143 GCCTTTTATAA-GCTCT 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82998643855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5