BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04600.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939860 jgi|Araly1|939860|scaffold_600404.1 1120 0.0
> Ahg939860 jgi|Araly1|939860|scaffold_600404.1
Length=708
Score = 1120 bits (606), Expect = 0.0
Identities = 678/712 (95%), Gaps = 7/712 (1%)
Strand=Plus/Plus
Query 46 tctcGCCGACGACGAAAACATGGGTGCCAAGGCGAAGAAAGCTTTGAAGAAGAACATGAA 105
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2 TCTCGCCGACGACGAAAACATGGGTGCCAAGGCGAAGAAAGCTCTGAAGAAGAACATGAA 61
Query 106 GAAGGTTGCTGCTTCGGCTTCTTCTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTC 165
|||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||
Sbjct 62 GAAGATTGCTGCTTCGGCTGCTTCTTCTCAGCTACCTCCTCCCCAGAATTCGAAACCTTC 121
Query 166 AGCTGATTTTTTGCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACC 225
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 122 AGCTGATTTTTTGCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTGACCTCCCAACC 181
Query 226 TCTTCAGAATAAAGCTACTGTGCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGAC 285
|||| || ||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 182 TCTTGAGCATAAAGCTACTGTCCTATACATCGGGAGAATCCCTCATGGCTTCTACGAGAC 241
Query 286 TGAGATTGAAGCTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAA 345
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGAGATTGAAGCTTTCTTCTCACAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAA 301
Query 346 CAAAAAGACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGGTGGC 405
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CAAAAAGACTGGCAAGTCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGGTGGC 361
Query 406 GGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCA 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCA 421
Query 466 TGTCATTGAACCAGAGAATGTTAAACCCAATCTGTGGAGAGGGTTTAAATGTAACTTCAA 525
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 422 TGTCATTGCACCAGAGGATGTTAAACCCAATCTGTGGAAAGGGTTTAAATGTAACTTCAA 481
Query 526 ACCAGTGGATTCGGTTCAGATTGAGCGAAGACAACTTAATAAGGAAAGGACATTGGAAGA 585
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 482 ACCAGTGGATTCAGTTCAGATTGAGCGTAGACAACATAATAAGGAAAGGACATTGGAAGA 541
Query 586 GCATAGGAAAATGTTGCAGAAGATAGTTAAAAAGG-ATCAGAAAAGGAGGAAGAGAATCG 644
|||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 542 GCATAGGAAAATGTTGCAGAAGGTAGT-AAAAAGGGATCAGAAAAGGAGGAAGAGAATCA 600
Query 645 AAGCCGCTGGAATAGAATACGAATGCCCTGAGCTTGTTGGAAACACACAGCCAGTCCCGA 704
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGCCGCTGGAATAGAATATGAATGCCCTGAGCTTGTTGGAAACACACAGCCAGTCCCGA 660
Query 705 AGAGGATCAAGTTTAGTGAAGAAGACTAAAAG-CTGAAGCTGAACAACACTT 755
|||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 661 AGAGGATCAAGTTTAGTGAAGA---CTAAAAGAC-GAAGCTGAACAACACTT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5