BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04610.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487242 jgi|Araly1|487242|fgenesh2_kg.6__376__AT5G04610.1 1799 0.0
> Ahg487242 jgi|Araly1|487242|fgenesh2_kg.6__376__AT5G04610.1
Length=1318
Score = 1799 bits (974), Expect = 0.0
Identities = 1213/1327 (91%), Gaps = 21/1327 (2%)
Strand=Plus/Plus
Query 11 AAATGGCGCTTGATGTGAGAATCTTCGAGAAAACCTCTCCTTCTCGTTTCATCTCTTTCA 70
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAATGGCGCTTGATGTGAAAATCTTCGAGAAAATCTCTCCTTCTCGTTTCATCTCTTTCA 60
Query 71 CTATCCCTAACCCTAATTCTCCGATTCATCTCCTCCGCGTCGCCGTCCTCGACTCGCCTG 130
|||||||||| || | |||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 61 CTATCCCTAATCCGATTTCTTCGATACATCTCCTCCGCGTCGCCGTCCTCGACACGCCTG 120
Query 131 TTCATTCCACTGAGTCTTCTCCTCCCCGAGTCGCCGCCATTCTCGTCCCCAAGCACCGAG 190
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCATTGCACTGAGTCTTCTCCTCCCCGAGTCGCCGCCATTCTCGTCCCCAAGCACCGAG 180
Query 191 AATCCGATTGGATCTTCTCCACTGAGTCCGGTCAAT-TACAGCTTCTCCTTAA-CATGCC 248
||||||||||||||||||||||||||||||| || | ||||||| |||||||| | | ||
Sbjct 181 AATCCGATTGGATCTTCTCCACTGAGTCCGGCCA-TCTACAGCTCCTCCTTAATC-TCCC 238
Query 249 AGAAATCTCTCGATTGATCTTGATCGGTGATGATCACGATACTGACTCTGATTTACCTGC 308
||| |||||||| |||||||| ||||||||||||||||| || |||||||||||| ||
Sbjct 239 AGACATCTCTCGGTTGATCTTAATCGGTGATGATCACGACGGTGGCTCTGATTTACCCGC 298
Query 309 GGTTTATCACCGACCGAAC-GGCGAAGACGACGAATCTGAGAAACTCGAGATAAGATTGA 367
|||||| |||||||||| | || ||||||||||||||||||| |||||||| |||||||
Sbjct 299 GGTTTACCACCGACCGA-CTGGTGAAGACGACGAATCTGAGAGTCTCGAGATGAGATTGA 357
Query 368 AACCTCTTGTGGTAGCTTTGTTACCTAAAACCCTAA-CACGAGAAGAAATCGACGATGTG 426
||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||||||||
Sbjct 358 AACCTCTTGTGGTAGCTCTGTCACCTAAAACCCTAATC-CGAGAGGAAATCGACGATGTT 416
Query 427 CCTTTTCTGATTTACGATGATAATGTTGTCTCCAGTGTAGAGATTGAAAAATGCGTCGGG 486
|||||||||||||||||||||||||||||||| || |||| | | || |||| ||||||
Sbjct 417 CCTTTTCTGATTTACGATGATAATGTTGTCTCTAGCGTAGTGCTGGAGAAATCCGTCGGA 476
Query 487 CCTTTCGTTGGTGAAATGTTAATTGAAGATGTAGAGATTGAGATCGATGATGGAGTTAGA 546
|||||||||||||||||| | ||||||||||||||||||||||| || || ||||| |||
Sbjct 477 CCTTTCGTTGGTGAAATGCTGATTGAAGATGTAGAGATTGAGATTGAAGACGGAGTAAGA 536
Query 547 GAATTTAGGAGGAGATTGAGGTTTAAGAGAATGCCAAATTTAGTTCAATCTGCCATTAAA 606
||||| |||| ||||||||| |||||||||||||| |||||||||||||||| ||| |||
Sbjct 537 GAATTCAGGAAGAGATTGAGATTTAAGAGAATGCCTAATTTAGTTCAATCTGACATCAAA 596
Query 607 ATCATTCCCAGAAGTTGTTCGAATCCTTCTCTGCCATTAATGGGAACAGAGTTCAAGCTT 666
||||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 597 ATCATCCCCAGTAGTTGTTCGAATTCTTCTCTGCCATTAACGGGAACAGAGTTCAAGCTT 656
Query 667 GATCTTACGGAACTTGTGCATCCTTACTTGGCACCAATGGTGGCAAGTCTTAGCTTGATT 726
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATCTTACGGAACTTGTGCATCCTTACTTGGCACCAATGGTGGCAAGTCTTAGCTTGATT 716
Query 727 GGTTCTGATGTATATGATCATCTCAAATCTAAACCAAAGGCATTGTGCATTGGGGTTGGA 786
|||||||| ||||||| | || ||||||| ||||||||||||||||||||| ||||||
Sbjct 717 GGTTCTGACATATATGAGC-TC--AAATCTAGACCAAAGGCATTGTGCATTGGAGTTGGA 773
Query 787 GGTGGTGGATTGCTAAGTTTCTTAAGGCTACAGTTAGGGTTCGAAGTTACAGGCGTAGAG 846
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 774 GGTGGTGGATTGCTTAGTTTCTTGAGGCTACAGTTAGGGTTTGAAGTTACAGGCGTAGAG 833
Query 847 ATAGATCCTGAAGTCTTGAGGATTGCAAGGCAATACTTCGGGTTAGAGGAAAGCTTAGCT 906
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 834 ATAGATCCTGAAGTCTTGAGGATTGCGAGACAATACTTCGGGTTGGAGGAAAGCTTAGCT 893
Query 907 CGTGTTCACGTTGAAGATGGTATTGAGTTCTTAAAGAGACTTTCTAAAAGCTGTGATGAT 966
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 894 CGTGTTCACGTTGAAGATGGTATTGAGTTCTTAAAGAGACTCTCTACTAGCTGTGATGAT 953
Query 967 GATGCCA-GATTTGATGTCTTGATGGTTGATCTGGACTCTACTGATCCAATTCACGGCAT 1025
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 954 GATGCCAAG-TTTGATGTCTTGATGGTTGATCTCGACTCTACTGATCCGATTCACGGCAT 1012
Query 1026 GACTGCTCCTCCGGTTGAGTTTGTGGCTAAAGATGTGT-TGCTAGCTGCAAGAACTGTTC 1084
|||||||||||| ||||||||||||||||||||||| | ||| ||||||||||| ||||
Sbjct 1013 GACTGCTCCTCCTGTTGAGTTTGTGGCTAAAGATGT-TCTGCAAGCTGCAAGAAAAGTTC 1071
Query 1085 TTGTTCCTTCTGGGGTTTTCATTATCAATGTCATTCCTCCGAACAAGACATTTTACCAAG 1144
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 1072 TTGTTCCTTCTGGGGTTTTCATCATCAATGTCATTCCTCCAAACAAGACATTCTACCATG 1131
Query 1145 AGCTTCAAGACCAGTTTAGACATGTCTTTGCCGAGTTGTATGAGATCGATGTAGGAAATG 1204
| ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1132 AACTTCAAGACCAATTTAGACATGTCTTTGATGAGTTGCATGAGATCGATGTAGGAAATG 1191
Query 1205 GTGAGAATTTTGTTCTCATCGCAACCGTTGCACCTAGA-A-AG-A-GCG--GTTTCAACA 1258
||||||| ||||||||||| || || ||| | |||||| | || | | | |||||||||
Sbjct 1192 GTGAGAACTTTGTTCTCATTGCGACAGTTACTCCTAGAGATAGCAAGAGCAGTTTCAACA 1251
Query 1259 GAGAGAATCTAACACCCGCTGTCTCGGGAAAGTATCTTGATGCTATACAGAAAATCTGAA 1318
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1252 GAGAGAATCTAACACCCGCTGTCTCGGAAAAATATCTTGATGCTATACAGAAAATCTGAA 1311
Query 1319 TCATTGA 1325
|||||||
Sbjct 1312 TCATTGA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5