BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04620.2
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487244 jgi|Araly1|487244|fgenesh2_kg.6__378__AT5G04620.2 2534 0.0
> Ahg487244 jgi|Araly1|487244|fgenesh2_kg.6__378__AT5G04620.2
Length=1534
Score = 2534 bits (1372), Expect = 0.0
Identities = 1483/1537 (96%), Gaps = 5/1537 (0%)
Strand=Plus/Plus
Query 72 CACTTAGAATGGCGGATCATTCGTGGGATAAAACTGTGGAAGAAGCAGTGAATGTGCTTG 131
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CACTTACAATGGCGGATCATTCGTGGGATAAATGTGTGGAAGAAGCAGTGAATGTGCTTG 60
Query 132 AATCCAGGCAAATTCTTCGATCTTTGAGGCCCATTTGCATGTCTAGGCAAAACGAAGAAG 191
|||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 61 AATCCAGGCAAATTCTTCGATCTTTGAGACCCATTTGTATGTCTAGGCGAAACGAAGAAG 120
Query 192 AAATAGTGAAAAGCAGAGCCAATGGAGGAGACGGGTACGAGGTGTTCGACGGTTTGTGTC 251
|||||||||||| || || |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 121 AAATAGTGAAAATCATAGGCAATGGTGGAGACGAGTACGAGGTGTTCGACGGTTTGTGTC 180
Query 252 AATGGGATCGGACTTCAGTTGAGGTGTCTGTCTCGATTCCTACATTTCAGAAATGGCTTC 311
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 AATGGGATCGGACTTCCGTTGAGGTTTCTGTCTCGATTCCTACATTTCAGAAATGGCTTC 240
Query 312 ACGATGAACCCAGCAACGGAGAAGAGATTTTTAGTGGAGATGCATTAGCTGAGTGTAGAA 371
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 241 ACGATGAACCCAGCAACGGAGAAGAGATTTTTAGTGGAGATGCAATAGCTGAGAGTAGAA 300
Query 372 AAGGGAGATTCAAGAAGCTGCTTTTGTTCTCTGGGAATGATTATTTGGGTTTGAGCTCAC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGGAGATTCAAGAAGCTGCTTTTGTTCTCTGGGAATGATTATTTGGGTTTGAGCTCAC 360
Query 432 ATCCTACAATATCAAACGCTGCTGCAAACGCAGTCAAAGAATATGGTATGGGACCTAAGG 491
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 ATCCTACAATATCAAATGCTGCTGCAAACGCAGCCAAAGAATATGGTATGGGACCTAAGG 420
Query 492 GTTCTGCTTTAATATGTGGCTATACCACTTATCATCGTTTGCTTGAGTCTAGTTTGG-CG 550
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GTTCTGCGTTAATATGTGGCTATACCACTTATCATCGTTTGCTTGAGTCTAGTTTGGCCG 480
Query 551 CAACTGAAGAAAAAAGAGGATTGTCTTGTTTGTCCTACTGGGTTTGCTGCCAATATGGCT 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 -AACTGAAGAAAAAAGAGGATTGTCTTGTTTGTCCTACTGGGTTTGCTGCCAATATGGCT 539
Query 611 GCAATGGTTGCAATTGGAAGTGTTGCTTCTCTTTTGGCCGCTAGCGGGAAACCTCTGAAG 670
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 GCAATGGTTGCAATTGGAAGTGTTGCTTCTCTTTTGGCTGCTAGCGGGAAACCTCTGAAG 599
Query 671 AATGAAAAAGTTGCCATCTTTTCTGATGCGCTGAATCATGCATCAATTATTGATGGTGTC 730
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 AATGAAAAAGTGGCCATTTTTTCTGATGCACTGAATCATGCATCAATTATTGATGGTGTC 659
Query 731 CGTCTTGCTGAACGACAAGGAAATGTTGAAGTTTTTGTTTATCGACACTGTGACATGTAT 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGTCTTGCTGAACGACAAGGAAATGTTGAAGTTTTTGTTTATCGACACTGTGACATGTAT 719
Query 791 CACCTTAATTCGTTATTATCAAATTGCAAAATGAAGAGGAAGGTCGTGGTGACTGATAGC 850
|| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 CATCTTAATTCGTTACTATCAAGTTGCAAAATGAAGAGGAAGGTCGTGGTGACTGATAGC 779
Query 851 TTATTTAGTATGGACGGTGACTTTGCACCAATGGAAGAGCTCTCTCAGCTTCGGAAGAAG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTATTTAGTATGGACGGTGACTTTGCACCAATGGAAGAGCTCTCTCAGCTTCGGAAGAAG 839
Query 911 TATGGCTTCCTTCTAGTTATTGATGATGCTCATGGAACATTTGTCTGTGGAGAAAAC-GG 969
||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 840 TATGGCTTCCTACTAATTATTGATGATGCTCATGGAACATTTGTTTGTGGAG-AAACTGG 898
Query 970 TGGTGGCGTGGCTGAGGAATTTAACTGTGAAGCTGATGTAGATTTATGTGTGGGCACTTT 1029
|||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 899 TGGTGGTGTGGCCGAGGAATTTAACTGCGAAGCCGACGTAGATTTATGTGTGGGCACTTT 958
Query 1030 GAGTAAGGCAGCAGGGTGTCATGGCGGTTTCATAGCTTGCAGCAAAAAATGGAAGCAACT 1089
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 GAGTAAGGCAGCAGGGTGTCATGGCGGATTCATAGCTTGCAGCAAAAAATGGAAGCAACT 1018
Query 1090 GATACAGTCGAGAGGTCGTTCATTCATATTTTCAACAGCAATCCCTGTCCCAATGGCTGC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATACAGTCGAGAGGTCGTTCATTCATATTTTCAACAGCAATCCCTGTCCCAATGGCTGC 1078
Query 1150 AGCTGCTTATGCAGCAGTTGTAGTGGCGAGGAAGGAGATATGGAGAAGAAAGGCAATATG 1209
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 AGCTGCTTACGCAGCAGTTGTAGTGGCGAGGAAGGAGAGATGGAGAAGAAAGGCAATATG 1138
Query 1210 GGAGAGGGTAAAAGAGTTCAAGGAATTATCTGGAGTTGACATCTCAAGCCCCATTATCTC 1269
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGAGAGGGTAAAAGAGTTCAAGGCATTATCTGGAGTTGACATCTCAAGCCCCATTATCTC 1198
Query 1270 ACTTGTTGTAGGGAATCAAGAGAAAGCCCTCAAAGCGAGCCGGTATCTATTAAAATCAGG 1329
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 ACTTGTTGTAGGCAATCAAGAGAAAGCCCTCAAAGCGAGCCGGTATCTGTTAAAATCAGG 1258
Query 1330 CTTCCATGTAATGGCAATACGACCGCCCACAGTGCCACCCAATTCTTGCAGGCTAAGGGT 1389
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1259 CTTCCATGTAATGGCAATACGACCACCCACAGTGCCACCCAATTCTTGCAGGCTAAGGGT 1318
Query 1390 GACACTGAGTGCAGCACATACCACAGAAGATGTGAAGAAACTCATCACTGCGCTTTCTTC 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GACACTGAGTGCAGCACATACCACAGAAGATGTGAAGAAACTCATCACTGCGCTTTCTTC 1378
Query 1450 TTGTTTGGACTTTGACAACACAGCCACTCACATTCCTTCCTTTCTATTTCCCAAATTATA 1509
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1379 TTGTTTGGACTTTGACAACACCGCCACTCACATTCCTTCCTTTCTCTTTCCCAAATTATA 1438
Query 1510 AAACTTCTTTCTGTTGTCGCAATTATTCCAAAGCTCTAATTCTAAAATTGTTTCTGATAT 1569
|||| | ||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1439 AAACCT-TTTCTGTTGTCTCAATTATTCCAAAACTCTAATTCTTAAATTGTTTGTGATAT 1497
Query 1570 TGTCAGTGAAAGAATCACTTGAAGTACAGAGTTCATT 1606
||||||||||||||||||||||| || ||||||||||
Sbjct 1498 TGTCAGTGAAAGAATCACTTGAACTAGAGAGTTCATT 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5