BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04630.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939863 jgi|Araly1|939863|scaffold_600407.1 2146 0.0
Ahg487247 jgi|Araly1|487247|fgenesh2_kg.6__381__AT5G04660.1 915 0.0
> Ahg939863 jgi|Araly1|939863|scaffold_600407.1
Length=1561
Score = 2146 bits (1162), Expect = 0.0
Identities = 1413/1534 (92%), Gaps = 17/1534 (1%)
Strand=Plus/Plus
Query 1 ATGTTAGACATCTCCAATTA-TGTCTTCTTCTTCTTCACCCTTGTCACAATTCTCCTATC 59
||||||||||||||||| || ||| || ||||||||||| |||||||| |||||||||||
Sbjct 21 ATGTTAGACATCTCCAA-TAGTGTTTTATTCTTCTTCACTCTTGTCACGATTCTCCTATC 79
Query 60 ATGTTTGGTTTACATACTCACGCGCCACAGTCACAATCCAAAGTGCGCGAACCTCCCTCC 119
| | | ||||| ||||||||| ||||||||| | ||| ||| ||||||||||||
Sbjct 80 A----T-G--TACAT--TCACGCGCCTGAGTCACAATTCGAAGCGCGTGAACCTCCCTCC 130
Query 120 AGGCCCAAAAGGTTGGCCGGTAGTTGGGAATCTGTTACAGTTCGCGCGCTCCGGTAAACA 179
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 131 AGGCCCACCGGGTTGGCCGGTGGTTGGGAATCTGTTACAGTTCGCGCGCTCCGGGAAACA 190
Query 180 GTTTTTCGAATATGTCGATGAGATGAGAAACATCTACGGCCCAATTTTCACACTTAA-GA 238
|||||||||||| ||||| ||||||||||| || ||||||||||||||||| |||| ||
Sbjct 191 GTTTTTCGAATACGTCGACGAGATGAGAAAGATGTACGGCCCAATTTTCAC-GTTAAGGA 249
Query 239 TGGGAATTCGAACGATGATCATCATCTCCGACGCTAATCTCGCACACCAAGCCTTGATCG 298
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 250 TGGGAATCCGAACAATGATCATCATCTCCGACGCAAATCTCGCACACCAAGCCTTGATCG 309
Query 299 AACGTGGAGCCCAATTCGCAACCCGACCCGCCGAAACTCCGACCCGGAAAATCTTCAGTT 358
| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 310 AGCGTGGAGCCCAATTCGCAACCCGACCCGTCGAAACACCGACCCGGAAAATCTTCAGTT 369
Query 359 CTAGCGATATCACCGTTCATTCCGCTATGTACGGTCCCGTGTGGCGATCACTGAGACGGA 418
|||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 370 CTAGCGATATCACCGTCCATTCCGCGATGTACGGTCCCGTGTGGCGAACCCTGAGACGGA 429
Query 419 ACATGGTTCAAAACATGCTCTGCTCTAACCGGTTAAAGGAATTTGGTTCAATTAGAAAAT 478
|||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||
Sbjct 430 ACATGGTTCAAAACATGCTCAGCTCTAGCCGGTTAAAGGAATTTGGTTTAATCAGAAAAT 489
Query 479 CCGCCATTGATAAGCTCGTGGAGAAGATCAAATCTGAAGCTAAGGAAAACGACGGGCTCG 538
|||||||||| ||||||||||||||||||||||| |||||||| ||| |||| || ||||
Sbjct 490 CCGCCATTGAAAAGCTCGTGGAGAAGATCAAATCGGAAGCTAAAGAACACGAAGGACTCG 549
Query 539 TCTGGGTTCTAAGAAACGCTAGATTCGCTGCTTTTTGTATCTTGTTAGATATGTGTTTCG 598
| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 550 TTTGGGTTTTGAGAAACGCTAGATTCGCTGCTTTTTGTATCTTGTTAGATATGTGTTTTG 609
Query 599 GAGTTAAAATGGAAGAAGAATCGATTGAGAAGATGGATCAGATGATGACGGAGATTTTAA 658
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GAATCGAAATGGAAGAAGAATCGATTGAGAAGATGGATCAGATGATGACGGAGATTTTAA 669
Query 659 CCGCCGTTGATCCACGAATTCACGACTATCTTCCGATTCTAACTCCGTTTTACTTCAAGG 718
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 670 TCGCCGTTGATCCACGAATTCACGACTACCTTCCGATTCTAACTCCGTTTTACTTCAACG 729
Query 719 AGAGGAAAAATTCTCTGGAACTTCGCCGGAAACTTGTCCAATTCGTCGTTGGATTCATCG 778
|||| ||||| |||||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 730 AGAGAAAAAAAGCTCTGGAACTTCGCCGGAAACTTGTCGAATTCGTTGTCGGATTCATCG 789
Query 779 AGAAACGACGATTAGCGATTCGAAATCTCGGCTCCGATAAAACGGCGTCGTCTTTCGCGT 838
|||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 790 AGAAGCGACGATCGGCGGTTCGAAATCCCGGCTCCGATAAAACGGCGACGTCTTTCGCGT 849
Query 839 ATCTTGATACTTTATTCGATCTCAGAGTTGATGGTCGTGAAACGTCACCGTCAGATGAAG 898
|||||||||||||||||||||||||||| ||||| ||||||||| | ||||| |||||||
Sbjct 850 ATCTTGATACTTTATTCGATCTCAGAGTCGATGGCCGTGAAACGACGCCGTCTGATGAAG 909
Query 899 ATCTCGTGACGCTGTGTTCAGAGTTTCTCAACGCCGGTACGGATACGACGGGGACGGCGA 958
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATCTCGTGACTCTGTGCTCGGAGTTTCTCAACGCCGGTACGGATACGACGGGGACGGCGA 969
Query 959 TAGAGTGGGGAATCGCGGAGCTGATATCGAATCCGA-AGATTCAATCTCGGCTGTACGAT 1017
| || |||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 970 TTGAATGGGGAATCGCGGAGCTGATTTCGAATCC-AGAGATTCAATCTCGGCTGTACGAT 1028
Query 1018 GAGATTAAATCAACGGTGGGAGATGATCGAACGGTTGAGGAGAAAGATTTGAATAAAATG 1077
||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct 1029 GAGATTAAATCAACGGTGGGAGATGATCGTACGGTAGAGGAGAAAGATGTGGATAAAATG 1088
Query 1078 GTCTTTTTACAAGCTTTTGTTAAGGAGCTTCTCCGGAGACATCCACCGACGTATTTCACG 1137
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1089 GTCTTCTTACAAGCTTTTGTTAAGGAGCTTCTCCGGAGACATCCGCCGACGTATTTCACG 1148
Query 1138 TTAACTCACGGCGTTACGGAGCCGACTAATCTCGCGGGTTACGATATTCCCGTCGGGGCT 1197
|||||||||||||||||||||||||| |||||| | ||||||||||||| || || |||
Sbjct 1149 TTAACTCACGGCGTTACGGAGCCGACGAATCTCTCCGGTTACGATATTCTGGTTGGAGCT 1208
Query 1198 AATGTTGAGTTTTATCTTCCCGGTATAAGTGAAGACCCGAAGATATGGTCTAAACCGGAG 1257
|||||||||||||||||||| ||||| || || ||||||||||| ||||||||||||||
Sbjct 1209 AATGTTGAGTTTTATCTTCCGGGTATTAGCGAGGACCCGAAGATCTGGTCTAAACCGGAA 1268
Query 1258 AAATTTGATCCGGACCGGTTTATAACAGGTGGAGAAGACGCCGATTTAACCGGAGTCGCC 1317
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AAATTCGACCCGAACCGGTTTATAACAGGTGGAGAAGACGCCGATTTAACCGGAGTCGCC 1328
Query 1318 GGAGTTAAAATGATGCCGTTCGGAATTGGCCGTCGGATTTGTCCGGGGCTTGGAATGGCG 1377
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1329 GGGGTTAAGATGATGCCGTTCGGAATTGGCCGTCGGATTTGCCCGGGGCTTGGAATGGCA 1388
Query 1378 GTCGTACACGTGGAGCTAATGCT-GTCGAGGATGGTTCAAGAGTTTGAGTGGAGCTCGTA 1436
|| |||||||||||||||||||| | ||||||||||||||||||| ||||||| | ||||
Sbjct 1389 GTGGTACACGTGGAGCTAATGCTAG-CGAGGATGGTTCAAGAGTTCGAGTGGACCACGTA 1447
Query 1437 CCCGCCGGAGAGCCAAGTGGATTTCACCGGCAAATTGGTGTTCGCGGTGGTGATGAAGAA 1496
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 CCCGCCGGGGAGCCAAGTGGATTTCACCGGCAAATTGGTGTTCGCGGTGGTGATGAAGAA 1507
Query 1497 TCCGTTGAGAGCGAGGGTTAAAGCTAGGGTTTAA 1530
||||||||||||||||||||||||||||||||||
Sbjct 1508 TCCGTTGAGAGCGAGGGTTAAAGCTAGGGTTTAA 1541
> Ahg487247 jgi|Araly1|487247|fgenesh2_kg.6__381__AT5G04660.1
Length=1642
Score = 915 bits (495), Expect = 0.0
Identities = 1158/1467 (79%), Gaps = 90/1467 (6%)
Strand=Plus/Plus
Query 109 AACCTCCCTCCAGGCCCAAAAGGTTGGCCGGTAGTTGGGAATC-TGTTACAGTTCGCGCG 167
||||| |||||||| || |||||||||||| | |||| | | || |||||||||||
Sbjct 136 AACCTTCCTCCAGGTCCGCCAGGTTGGCCGGT-GGCCGGAAACTTATTCCAGTTCGCGCG 194
Query 168 CTCCGGTAAACAGTTTTTCGAATATGTC-GATGAGAT-GAGAAACATC-TACGGCCCAAT 224
||||||||| | |||||||||||| | | || ||| | ||||| | | |||||||||||
Sbjct 195 CTCCGGTAAGCCGTTTTTCGAATACG-CAGAGGAGCTCAAGAAA-A-CGTACGGCCCAAT 251
Query 225 TTTCACACTTAAG-ATGGGAATTCGAACGATGATCATCATCTCCGACGCTAA-TCTCG-C 281
|||||||| | || ||||| | ||| |||||||||||| |||||||||| || ||| | |
Sbjct 252 TTTCACAC-TGAGAATGGGGACTCGCACGATGATCATCCTCTCCGACGC-AAGTCTAGTC 309
Query 282 ACACCAAGCCTTGATCGAACGTGGAGCCCAATTCGCAACCCGACCCGCCGA-AACTCCGA 340
||| |||| |||||| |||| || || | ||||| | || |||||||| || |||||
Sbjct 310 -CACGAAGCTTTGATCCAACGCGGTGCTCTGTTCGCTTCACGTCCCGCCGAGAA-TCCGA 367
Query 341 CCCGGAA-AATCTTCAGTTCTAGCGATA-TCACCGTTC-ATTCCGCTATGTACGGTCCCG 397
||| ||| ||||||||| | || | | | |||||| || | |||||| |||||||| |
Sbjct 368 CCC-GAACAATCTTCAGCTGTAAC-AAATTCACCG-TCAACGCCGCTAAATACGGTCCAG 424
Query 398 TGTGGCGATCACTGAGACGGAACATGGTTCAAAACATGCTCT-GCTCTAAC-CGGTTAAA 455
||||||||||||||||| | |||||||||||||||||||| | |||| ||| || | ||
Sbjct 425 TGTGGCGATCACTGAGAAGAAACATGGTTCAAAACATGCT-TAGCTC-AACACGCCTCAA 482
Query 456 GGAATTTGGTTCAATTAGAAAATCCGCCATTGATAAGCTCGTGGAGAAGATCAAATCTGA 515
||| ||||| ||| | ||| |||| ||||| ||||| ||| | |||| ||||||||| ||
Sbjct 483 GGAGTTTGGATCACTGAGACAATCGGCCATGGATAAACTCATCGAGAGGATCAAATCGGA 542
Query 516 AGCTAAG-GAAAACGACGGGCTCGTCTGGGTTC-TAAGAAACGCTAGATTCGCTGCTTTT 573
|||| || || |||||||| || ||||||||| ||| |||||| ||||||||||| |||
Sbjct 543 AGCT-AGAGACAACGACGGACTAATCTGGGTTCTTAA-AAACGCAAGATTCGCTGCGTTT 600
Query 574 TGTA-TCTTGTTAGATATGTGTTTCGGAGTTAAAATGGAAGAAGAATCGATTGAGAAGAT 632
|||| || | ||||| |||||||||||| | | ||||| |||||||| || ||||||||
Sbjct 601 TGTATTC-TATTAGAAATGTGTTTCGGAATCGAGATGGATGAAGAATCAATCGAGAAGAT 659
Query 633 GGATCAGATGATGACGGAGA-T-T-TTAACCG-CCGTTGATCCACGAATTC-ACGACTAT 687
||| | || ||| | | | | | || | | ||||||||||||||| | |||| |||
Sbjct 660 GGA-C-GA-GATTTTGAAAACTGTGTTGA-TGACCGTTGATCCACGAA-CCGACGATTAT 714
Query 688 CTTCCGATTCTAACTCCGTT-TTACTTCAAGGAGAGGAAA-AATTCTCTGGAACTTCGCC 745
||||||||||| ||||||| || || ||| ||||||||| | |||| ||| ||||||
Sbjct 715 CTTCCGATTCTCGCTCCGTTCTT-CTCCAAAGAGAGGAAACGA-GCTCTCGAAGTTCGCC 772
Query 746 G-GAAACTTGTCCAATT-CGTCGTTGGA-TTCATCGAGAA-ACGAC-GATTAGCGATTCG 800
| | ||| || | ||| |||||| ||| || ||||| || ||||| || ||||||||
Sbjct 773 GTG-AACAAGT-CGATTACGTCGTCGGAGTT-ATCGA-AAGACGACGGA-GAGCGATTC- 826
Query 801 A-AATCTC-GGCTCCGATAAAACGGCGTCGTCTTTCGCGTATCTT-GATAC-TTTATTCG 856
| |||| | || || ||||||||||||||||||||| | || ||| ||||| || ||||
Sbjct 827 AGAATC-CAGGATCTGATAAAACGGCGTCGTCTTTCTCCTA-CTTAGATACACTT-TTCG 883
Query 857 ATC-TCAGAGTTGATGGTCGTGAAACGTCACCGTC-AGATGAAGATCTCGTGACGCTGTG 914
| | | | | | || |||||| ||||| | ||||| | | ||||| |||||||| || ||
Sbjct 884 A-CTTAAAAATCGAAGGTCGTAAAACGACGCCGTCTA-ACGAAGAGCTCGTGACTCTCTG 941
Query 915 TTCAGAGTTTCTCAACGCCGGTACGGATACGACGGGGACGGCGATAGAGTGGGGAATCGC 974
|| ||||||||||||| |||||||||||||||||||||||||| |||||||| || ||
Sbjct 942 CTCTGAGTTTCTCAACGGTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGATAGC 1001
Query 975 GGAGCTGATAT-CGAATCC-GAAGATTCAATCTCGGCTGTACGATGAGATTAAATCAACG 1032
||||||| | |||| || | |||||||||||||||| |||||||||||| ||||||||
Sbjct 1002 TCAGCTGAT-TGCGAAGCCTG-AGATTCAATCTCGGCTCTACGATGAGATTGAATCAACG 1059
Query 1033 GTGGGAGATGATCGAACGGTTGAGGAGAAAGATTTGAATAAAATGGTCTTTTTACAAGCT 1092
||||||| || ||| | |||| | ||||||||| || |||||||||||||||||||||||
Sbjct 1060 GTGGGAGGTGGTCGTAGGGTTAATGAGAAAGATGTGGATAAAATGGTCTTTTTACAAGCT 1119
Query 1093 TTTGTTAAGGAGCTTCTCCGGAGACATCCACCGACGTATTTCACGT-TAACTCACGGCGT 1151
|||||||| ||||||||||||| |||||| ||||| ||||| | | | || |||| |||
Sbjct 1120 TTTGTTAAAGAGCTTCTCCGGAAACATCCGCCGACTTATTTTTC-TCTGACGCACGCCGT 1178
Query 1152 TACGGAGCCGACTAATCTCGCGGGTTACGATATTCCCGTCGGGGCTAATGTTGAGTTTTA 1211
|| |||| |||| | || || ||||| |||||||||| ||| | ||| || ||| ||||
Sbjct 1179 TATGGAGACGACGACGCTTGCCGGTTATGATATTCCCGCCGGCGTTAACGTCGAGATTTA 1238
Query 1212 TCTTCCCGGTATAAGTGAAGACCCGAAGA-TATGGTCTAAACCGGAGAAA-TTTGATCCG 1269
||| || |||||||| || || |||| || | ||| ||| ||| | ||| |||||||||
Sbjct 1239 TCTGCCGGGTATAAGCGAGGATCCGA-GAATTTGGAATAACCCGAA-AAAGTTTGATCCG 1296
Query 1270 GACCGGTTTATAACAGGTGGAG-AAGACGCCGATTTAACCGG-AGTCGCCGGAGTTAAAA 1327
||||||||| | ||| || |||| || || ||||||| | | | ||||| || |
Sbjct 1297 GACCGGTTTTTGTTGGGTA-AGGAAGATGCTGACATAACCGGGATTAGT-GGAGTGAAGA 1354
Query 1328 TGATGCCGTTCGGAATTGGCCGTCGGATTTGTCCGGGGCTTGGAATGGCGGTCGTACACG 1387
|||| ||||| || | |||||| |||| ||||| ||||||| |||||| ||||||||
Sbjct 1355 TGATTCCGTTTGGTGTGGGCCGTAGGATCTGTCCAGGGCTTGCAATGGCAACCGTACACG 1414
Query 1388 TGGAGCTAATGCT-GTCGAGGATGGTTCAAGAGTTTGAGTGGAGCT-CGTACCCGCCGGA 1445
|| | | ||||| | || |||||||||| ||||| |||||| | | | || |||||||
Sbjct 1415 TGCATTTGATGCTTG-CGCGGATGGTTCAGGAGTTCGAGTGGTG-TGCTTATCCGCCGG- 1471
Query 1446 GA-GCCA-AGTGGATTTCACCGGCAAATTGGTGTTCGCGGTGGTGATGAAGAATCCGTTG 1503
|| | | | || ||||| |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1472 GAAGTGAGATTG-ATTTCGCCGGTAAATTGGAGTTTACGGTGGTGATGAAGAATCCGTTG 1530
Query 1504 AGAGCGAGGGTTAAAGCTAGGGTTTAA 1530
||||| | ||| ||| | ||| |||||
Sbjct 1531 AGAGCTATGGTCAAACCAAGGATTTAA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5