BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04640.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487246 jgi|Araly1|487246|fgenesh2_kg.6__380__AT5G04640.1 372 3e-102
> Ahg487246 jgi|Araly1|487246|fgenesh2_kg.6__380__AT5G04640.1
Length=870
Score = 372 bits (201), Expect = 3e-102
Identities = 291/331 (88%), Gaps = 20/331 (6%)
Strand=Plus/Plus
Query 637 GTTCACAAAAATATGGATGAGGACAATATCCACGTGTCTGATATGGACGACAAGGATACG 696
|||| || |||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 550 GTTCTCATAAATTTGGATGAGGACAATATCCACTTGTCTGATTTGGACGAC---GAT--- 603
Query 697 ATGCTAATGATTTCTGACAAGAACAATGTTTTACCTGAAAACTTGGA-TGAATTCGATCA 755
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 604 ATGCTAATGATTTCTGACAACAACAATGTTTTACCTGAAAACTT-GAGTGAATTCGATCA 662
Query 756 AGAGCTAGATCTTGATCAGCTAC-TTGATTTTGAGACAAACTATGAAAGCCTTTTGAAGA 814
||||||||||||||||||||| | ||||||||||||| || | |||||| ||||||||||
Sbjct 663 AGAGCTAGATCTTGATCAGCT-CATTGATTTTGAGACGAATTGTGAAAGTCTTTTGAAGA 721
Query 815 GTTGTGAGATGGAGGATTATGCCTCGATGGTGACTACAAAGCAAAATCTGTGCTC-AAAT 873
||| |||||| |||||||||| ||||||||||||||||||||||| || |||| || |
Sbjct 722 GTTTTGAGAT---GGATTATGCCACGATGGTGACTACAAAGCAAAATTTGAGCTCTAATT 778
Query 874 CCTGAAGCTGTTGAAGATGGAGGA-T--TAATGATTCAAAAAGATTT-ACCGGAGGATAA 929
|| |||||||| |||||||||||| | ||||||||||||||||||| | || ||||||
Sbjct 779 CC-GAAGCTGTGGAAGATGGAGGATTAATAATGATTCAAAAAGATTTGAATGG-GGATAA 836
Query 930 TCTCTGCTTTTCTGATTATTTCAGTGACTTA 960
||||||||||||||||||||||| ||| |||
Sbjct 837 TCTCTGCTTTTCTGATTATTTCAATGAGTTA 867
Score = 329 bits (178), Expect = 2e-89
Identities = 286/335 (85%), Gaps = 19/335 (6%)
Strand=Plus/Plus
Query 143 TAGCCACTCCGGTCTCTTCCAAATCAAACGTTTCTTTCTACACCTTTGGCCATTCCTCTG 202
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 5 TAGCCACTCCGGTTTCTTCCAACTCCAACGTTTCTTTCTACACCTTTGGCCATTCCTCTG 64
Query 203 TTGATAACGTTGTAGCCGCTTTCCTCACGAATCAGC-G--TCCTCGGGAAGGTCTAGGGT 259
| ||||||||||| || ||||||||| ||||||||| | ||||||||| ||||||||||
Sbjct 65 TCGATAACGTTGTTGCTGCTTTCCTCGCGAATCAGCAGCGTCCTCGGGAGGGTCTAGGGT 124
Query 260 TAGACTATTGGTGGGAAGATGAGAGGCTTTCAAAATCAGAGGA-CCTGGAGGAACTGAGA 318
||| | ||||||||||||||||| |||| ||||||||||||| || |||||||||||||
Sbjct 125 TAGGGTTTTGGTGGGAAGATGAGAAGCTTGCAAAATCAGAGGATCC-GGAGGAACTGAGA 183
Query 319 GACGCAATGGACTCGATGTCGAAGATGTTGAAAGATCTGAAGGATTTGCAGAATCAA--C 376
||||| |||||||| ||||| ||||||||||||||||||||||| |||| | |||| |
Sbjct 184 GACGCGATGGACTCAATGTCAAAGATGTTGAAAGATCTGAAGGAGTTGC-GTTTCAATGC 242
Query 377 ---G-AGATT-GT-GAG---GAG-G-ACGTGAAGAAGAAGGGTGTTTTACACGGAACTCA 425
| | | | | ||| | | | ||||||||||||||||||||||||||| ||||||
Sbjct 243 CTTGGAAAATAGACGAGATTGTGTGGACGTGAAGAAGAAGGGTGTTTTACACGCAACTCA 302
Query 426 TCAAAAGCAAACCTTTAATCCTGAATCATGTTCTG 460
|||| |||||||| ||| |||| |||| | |||||
Sbjct 303 TCAAGAGCAAACCCTTAGTCCTCAATCGTTTTCTG 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5