BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04640.1 Length=969 Score E Sequences producing significant alignments: (Bits) Value Ahg487246 jgi|Araly1|487246|fgenesh2_kg.6__380__AT5G04640.1 372 3e-102 > Ahg487246 jgi|Araly1|487246|fgenesh2_kg.6__380__AT5G04640.1 Length=870 Score = 372 bits (201), Expect = 3e-102 Identities = 291/331 (88%), Gaps = 20/331 (6%) Strand=Plus/Plus Query 637 GTTCACAAAAATATGGATGAGGACAATATCCACGTGTCTGATATGGACGACAAGGATACG 696 |||| || |||| |||||||||||||||||||| |||||||| |||||||| ||| Sbjct 550 GTTCTCATAAATTTGGATGAGGACAATATCCACTTGTCTGATTTGGACGAC---GAT--- 603 Query 697 ATGCTAATGATTTCTGACAAGAACAATGTTTTACCTGAAAACTTGGA-TGAATTCGATCA 755 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 604 ATGCTAATGATTTCTGACAACAACAATGTTTTACCTGAAAACTT-GAGTGAATTCGATCA 662 Query 756 AGAGCTAGATCTTGATCAGCTAC-TTGATTTTGAGACAAACTATGAAAGCCTTTTGAAGA 814 ||||||||||||||||||||| | ||||||||||||| || | |||||| |||||||||| Sbjct 663 AGAGCTAGATCTTGATCAGCT-CATTGATTTTGAGACGAATTGTGAAAGTCTTTTGAAGA 721 Query 815 GTTGTGAGATGGAGGATTATGCCTCGATGGTGACTACAAAGCAAAATCTGTGCTC-AAAT 873 ||| |||||| |||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 722 GTTTTGAGAT---GGATTATGCCACGATGGTGACTACAAAGCAAAATTTGAGCTCTAATT 778 Query 874 CCTGAAGCTGTTGAAGATGGAGGA-T--TAATGATTCAAAAAGATTT-ACCGGAGGATAA 929 || |||||||| |||||||||||| | ||||||||||||||||||| | || |||||| Sbjct 779 CC-GAAGCTGTGGAAGATGGAGGATTAATAATGATTCAAAAAGATTTGAATGG-GGATAA 836 Query 930 TCTCTGCTTTTCTGATTATTTCAGTGACTTA 960 ||||||||||||||||||||||| ||| ||| Sbjct 837 TCTCTGCTTTTCTGATTATTTCAATGAGTTA 867 Score = 329 bits (178), Expect = 2e-89 Identities = 286/335 (85%), Gaps = 19/335 (6%) Strand=Plus/Plus Query 143 TAGCCACTCCGGTCTCTTCCAAATCAAACGTTTCTTTCTACACCTTTGGCCATTCCTCTG 202 ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 5 TAGCCACTCCGGTTTCTTCCAACTCCAACGTTTCTTTCTACACCTTTGGCCATTCCTCTG 64 Query 203 TTGATAACGTTGTAGCCGCTTTCCTCACGAATCAGC-G--TCCTCGGGAAGGTCTAGGGT 259 | ||||||||||| || ||||||||| ||||||||| | ||||||||| |||||||||| Sbjct 65 TCGATAACGTTGTTGCTGCTTTCCTCGCGAATCAGCAGCGTCCTCGGGAGGGTCTAGGGT 124 Query 260 TAGACTATTGGTGGGAAGATGAGAGGCTTTCAAAATCAGAGGA-CCTGGAGGAACTGAGA 318 ||| | ||||||||||||||||| |||| ||||||||||||| || ||||||||||||| Sbjct 125 TAGGGTTTTGGTGGGAAGATGAGAAGCTTGCAAAATCAGAGGATCC-GGAGGAACTGAGA 183 Query 319 GACGCAATGGACTCGATGTCGAAGATGTTGAAAGATCTGAAGGATTTGCAGAATCAA--C 376 ||||| |||||||| ||||| ||||||||||||||||||||||| |||| | |||| | Sbjct 184 GACGCGATGGACTCAATGTCAAAGATGTTGAAAGATCTGAAGGAGTTGC-GTTTCAATGC 242 Query 377 ---G-AGATT-GT-GAG---GAG-G-ACGTGAAGAAGAAGGGTGTTTTACACGGAACTCA 425 | | | | | ||| | | | ||||||||||||||||||||||||||| |||||| Sbjct 243 CTTGGAAAATAGACGAGATTGTGTGGACGTGAAGAAGAAGGGTGTTTTACACGCAACTCA 302 Query 426 TCAAAAGCAAACCTTTAATCCTGAATCATGTTCTG 460 |||| |||||||| ||| |||| |||| | ||||| Sbjct 303 TCAAGAGCAAACCCTTAGTCCTCAATCGTTTTCTG 337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35988033648 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5