BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04660.1
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487247 jgi|Araly1|487247|fgenesh2_kg.6__381__AT5G04660.1 2495 0.0
Ahg478392 jgi|Araly1|478392|fgenesh2_kg.3__1093__AT3G10570.1 1160 0.0
Ahg939863 jgi|Araly1|939863|scaffold_600407.1 896 0.0
Ahg478391 jgi|Araly1|478391|fgenesh2_kg.3__1092__AT3G10560.1 769 0.0
> Ahg487247 jgi|Araly1|487247|fgenesh2_kg.6__381__AT5G04660.1
Length=1642
Score = 2495 bits (1351), Expect = 0.0
Identities = 1552/1649 (94%), Gaps = 13/1649 (1%)
Strand=Plus/Plus
Query 34 CAAGAAATAAACAGAGCTAAAATGTTTCCTCTAATCTCCTTTTCTCCAACTTCTCTTGAT 93
|||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 1 CAAGAAATAAACAGAGCTAAAATG--T-CTCTAATCTCCTTTTCTCCAACATCTCTTGAT 57
Query 94 TTCACCTTCTTCGCCATTATCATCTCAGGTTTCGTTTTCATCATCACTCGATGGAATTCC 153
||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 58 TTCACGTTCTTCGCCATTATCATCTCAGGTTTCGCTTTCATCCTCACTCGATGGAATTCA 117
Query 154 AATTCAAAGAAACGTTTAAACCTTCCTCCAGGTCCGCCAGGTTGGCCGGTGGTCGGAAAC 213
|| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 118 AAGTCTAAGAAACGTCTAAACCTTCCTCCAGGTCCGCCAGGTTGGCCGGTGGCCGGAAAC 177
Query 214 TTATTCCAGTTCGCGCGCTCAGGTAAACCGTTTTTCGAATACGCAGAGGATCTCAAGAAA 273
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 178 TTATTCCAGTTCGCGCGCTCCGGTAAGCCGTTTTTCGAATACGCAGAGGAGCTCAAGAAA 237
Query 274 ACGTATGGCCCGATTTTTACACTGAGAATGGGGACTCGAACAATGATCATCCTCTCCGAC 333
||||| ||||| ||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 238 ACGTACGGCCCAATTTTCACACTGAGAATGGGGACTCGCACGATGATCATCCTCTCCGAC 297
Query 334 GCAACTCTAGTCCACGAAGCTTTGATCCAACGCGGAGCTCTCTTCGCTTCACGACCCGCC 393
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 298 GCAAGTCTAGTCCACGAAGCTTTGATCCAACGCGGTGCTCTGTTCGCTTCACGTCCCGCC 357
Query 394 GAGAATCCGACCCGAACAATCTTCAGCTGCAACAAATTCACCGTCAACGCCGCTAAATAC 453
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 GAGAATCCGACCCGAACAATCTTCAGCTGTAACAAATTCACCGTCAACGCCGCTAAATAC 417
Query 454 GGTCCAGTGTGGCGATCTCTGAGAAGAAACATGGTTCAGAACATGCTTAGCTCAACACGT 513
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 GGTCCAGTGTGGCGATCACTGAGAAGAAACATGGTTCAAAACATGCTTAGCTCAACACGC 477
Query 514 CTCAAGGAATTCGGGA-AACTGAGACAATCCGCCATGGATAAACTCATCGAGAGGATCAA 572
|||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 CTCAAGGAGTT-TGGATCACTGAGACAATCGGCCATGGATAAACTCATCGAGAGGATCAA 536
Query 573 ATCGGAAGCTAGAGACAACGACGGGCTAATCTGGGTTCTTAAAAACGCAAGATTCGCTGC 632
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 ATCGGAAGCTAGAGACAACGACGGACTAATCTGGGTTCTTAAAAACGCAAGATTCGCTGC 596
Query 633 GTTTTGTATTCTCTTGGAAATGTGTTTCGGAATCGAGATGGATGAAGAGA-CAATCGAGA 691
|||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 597 GTTTTGTATTCTATTAGAAATGTGTTTCGGAATCGAGATGGATGAAGA-ATCAATCGAGA 655
Query 692 AGATGGATGAGATTTTGAAGACGGTGTTAATGACTGTTGATCCACGAATCGACGATTATC 751
||||||| ||||||||||| || ||||| ||||| ||||||||||||| |||||||||||
Sbjct 656 AGATGGACGAGATTTTGAAAACTGTGTTGATGACCGTTGATCCACGAACCGACGATTATC 715
Query 752 TTCCGATTCTTGCTCCGTTCTTCTCTAAAGAGAGGAAACGAGCTCTCGAAGTTCGCCGTG 811
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 TTCCGATTCTCGCTCCGTTCTTCTCCAAAGAGAGGAAACGAGCTCTCGAAGTTCGCCGTG 775
Query 812 AACAAGTCGATTACGTCGTCGGAGTTATCGAGAGACGACGGAGAGCGATTCAGAATCCAG 871
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 AACAAGTCGATTACGTCGTCGGAGTTATCGAAAGACGACGGAGAGCGATTCAGAATCCAG 835
Query 872 GATCTGATAAAACGGCGTCGTCTTTTTCATACTTAGATACACTCTTT-GATTTAAAAATC 930
||||||||||||||||||||||||| || |||||||||||||| ||| || |||||||||
Sbjct 836 GATCTGATAAAACGGCGTCGTCTTTCTCCTACTTAGATACACT-TTTCGACTTAAAAATC 894
Query 931 GAAGGTCGTAAAACGACGCCGTCTAACGAAGAGCTCGTGACGCTCTGCTCTGAGTTTCTT 990
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 895 GAAGGTCGTAAAACGACGCCGTCTAACGAAGAGCTCGTGACTCTCTGCTCTGAGTTTCTC 954
Query 991 AACGGTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGATAGCGCAGCTGATTGCG 1050
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 955 AACGGTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGATAGCTCAGCTGATTGCG 1014
Query 1051 AATCCTGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGGTGGGAGATGATCGT 1110
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1015 AAGCCTGAGATTCAATCTCGGCTCTACGATGAGATTGAATCAACGGTGGGAGGTGGTCGT 1074
Query 1111 AGGGTCGATGAGAAAGATGTGGACAAAATGGTCTTTTTACAAGCTTTTGTTAAGGAGCTT 1170
||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1075 AGGGTTAATGAGAAAGATGTGGATAAAATGGTCTTTTTACAAGCTTTTGTTAAAGAGCTT 1134
Query 1171 CTCCGGAAACATCCGCCGACTTATTTTTCTCTGACGCATGCCGTTATGGAGACGACGACG 1230
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1135 CTCCGGAAACATCCGCCGACTTATTTTTCTCTGACGCACGCCGTTATGGAGACGACGACG 1194
Query 1231 CTTGCTGGTTACGATATTCCCGCCGGCGTTAACGTCGAGGTTTATCTTCCGGGTATTAGT 1290
||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 1195 CTTGCCGGTTATGATATTCCCGCCGGCGTTAACGTCGAGATTTATCTGCCGGGTATAAGC 1254
Query 1291 GAGGATCCGAGAATTTGGAATAACCCGAAAAAGTTTGATCCGGACCGGTTTATGTTGGGT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1255 GAGGATCCGAGAATTTGGAATAACCCGAAAAAGTTTGATCCGGACCGGTTTTTGTTGGGT 1314
Query 1351 AAGGAAGATGCTGACATAACCGGGATTAGTGGAGTAAAAATGATTCCGTTTGGTGTGGGC 1410
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1315 AAGGAAGATGCTGACATAACCGGGATTAGTGGAGTGAAGATGATTCCGTTTGGTGTGGGC 1374
Query 1411 CGTAGGATCTGTCCAGGACTTGCAATGGCAACCATACACGTCCATTTGATGCTTGCGCGG 1470
||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1375 CGTAGGATCTGTCCAGGGCTTGCAATGGCAACCGTACACGTGCATTTGATGCTTGCGCGG 1434
Query 1471 ATGGTTCAGGAGTTCGAGTGGTGTGCTCATCCACCAGGAAGTGAGATTGATTTCGCCGGA 1530
||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 1435 ATGGTTCAGGAGTTCGAGTGGTGTGCTTATCCGCCGGGAAGTGAGATTGATTTCGCCGGT 1494
Query 1531 AAATTGGAGTTTACGGTGGTGATGAAGAATCCGTTGAGAGCTATGGTCAAACCAAGGATT 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AAATTGGAGTTTACGGTGGTGATGAAGAATCCGTTGAGAGCTATGGTCAAACCAAGGATT 1554
Query 1591 TAGTCTTTTATTGtttt-tttGTTAAGAATATTGAGATTATTGTAAGGTGTGTTTGCTTA 1649
|| |||| | | |||| |||||||||||||| | |||||||| ||||||||||||||
Sbjct 1555 TAATCTTA-AGTCTTTTATTTGTTAAGAATATCAACATTATTGTGTGGTGTGTTTGCTTA 1613
Query 1650 TAAACATTA--AAGTACCCAAATCTACAC 1676
||||| || ||||||||||| ||||||
Sbjct 1614 TAAACTTTTTTAAGTACCCAAAACTACAC 1642
> Ahg478392 jgi|Araly1|478392|fgenesh2_kg.3__1093__AT3G10570.1
Length=1684
Score = 1160 bits (628), Expect = 0.0
Identities = 1180/1441 (82%), Gaps = 59/1441 (4%)
Strand=Plus/Plus
Query 175 CTTCCTCCAGGTCCGCCAGGTTGGCCGGTGGTCGGAAACTTATTCCAGTTCGCGCGCTCA 234
||||| |||||||| || |||||||||||||| |||||| | ||||| |||||||||||
Sbjct 179 CTTCCACCAGGTCCTCCGGGTTGGCCGGTGGTTGGAAACCTCTTCCAATTCGCGCGCTCC 238
Query 235 GGTAAACCGTTTTTCGAATACGCAGAGGATCTCAA-GAAAACGTATGGCCCGATTTTTAC 293
|| || | ||||| ||| || | || ||| | || ||||| || || || | | |||
Sbjct 239 GGGAAGCAGTTTTACGAGTATGTTGATGATGT-AAGGAAAAAATACGGTCC--TATCTAC 295
Query 294 AC--TGAGAATGGGGACTCGAACAATGATCATCCTCTCCGACGCAACTCTAGTCCACGAA 351
|| |||| ||||| | |||||||||||||||| |||| || || |||| ||||||||
Sbjct 296 ACGTTGAGGATGGGAAGTCGAACAATGATCATCATCTCTGATTCAGCTCTCGTCCACGAC 355
Query 352 GCTT-TGATCCAACGCGGAGCTCTCTTCGCTTCACGACCCGCCGAGAATCCGACCCGAAC 410
| || |||| || || ||| | | ||||| | |||||| |||||||||| ||||||||
Sbjct 356 G-TTCTGATTCAGCGTGGACCAATGTTCGCAACCCGACCCACCGAGAATCCTACCCGAAC 414
Query 411 AATCTTCAGCTGCAACAAATTCACCGTCAACGCCGCTA-AATACGGTCCAGTGTGGCGAT 469
|||||||||| ||||| |||||||||||||| | | ||||| || ||||||||||
Sbjct 415 TATCTTCAGCTCCAACACTTTCACCGTCAACGCTTC-AGCGTACGGACCCGTGTGGCGAT 473
Query 470 CTCTGAG-AAGAAACATGGTTCAGAACATGCTT-AGCTC-AACAC-GTCTCAAG-GAATT 524
| ||||| ||| |||||||| ||||||||| || ||||| | | | || || || |||||
Sbjct 474 CCCTGAGAAAG-AACATGGTACAGAACATG-TTAAGCTCGATC-CGGT-TC-AGAGAATT 528
Query 525 CGGGAAACTGAGACAATCCGCCATGGATAAACTCATCGAGAGGATCAAATCGGAAGCTAG 584
|| | |||| |||||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 529 CGCGTCGTTGAGGCAATCCGCAATGGATAAACTCGTCGAGAGGATCAAATCAGAAGCTAA 588
Query 585 AGACAACGACGGGCTAATCTGGGTTCTTAA-AAACGCAAGATTCGCTGCGTTTTGTATTC 643
|||||||||||| || | ||||| | ||| |||||||||||||||||||||||||||||
Sbjct 589 AGACAACGACGGTCTTGTTTGGGTAC-TAAGAAACGCAAGATTCGCTGCGTTTTGTATTC 647
Query 644 TCTTGGAAATGTGTTTCGGAATCGAGATGGATGAAGAGA-CAATCGAGAAGATGGAT-GA 701
| || || |||||||| |||||||| ||||||||||| | | || ||| |||||| |
Sbjct 648 TTTTAGAGATGTGTTTTGGAATCGAAATGGATGAAGA-ATCGATTTTGAATATGGATCAA 706
Query 702 GATTTTGAAGACGGTGTTAATGACTGTTGATCCACGAATCGACGATTATCTTCCGATTCT 761
| | |||||| || || || || | ||||| || |||| |||||||| ||||| ||
Sbjct 707 G-TGATGAAGAAAGTTTTGATCACACTCAATCCAAGACTCGATGATTATCTCCCGATCCT 765
Query 762 TGCTCCGTTCTT-CTCTAAAGAGAG-GAAACGAGCTCTCGAAGTTCGCCGTGAACAAGTC 819
||||||||| || ||| || ||||| | || |||||||||| ||||| |||||||||||
Sbjct 766 TGCTCCGTT-TTACTCCAAGGAGAGAGCAA-GAGCTCTCGAGGTTCGTCGTGAACAAGTT 823
Query 820 GATTACGTCGTCGGAGTT-ATCGAGAGACGACGGAGAGCGATTCAGAATCC-AGGATCTG 877
|||| | |||| | || |||||||||||||||||||||||||||||||| ||| |||
Sbjct 824 GATTTCATCGT-TAAATTCATCGAGAGACGACGGAGAGCGATTCAGAATCCGGGGA-CTG 881
Query 878 ATAAAACGGCGTCGTCTTTTTCATA-CTTAGATACACTCTTTGA-TTTAAAAATCGAAGG 935
||||||| ||||||||||| || || ||| |||||||||||||| || |||| ||||||
Sbjct 882 ATAAAACAGCGTCGTCTTTCTCTTACCTT-GATACACTCTTTGACCTT-AAAACCGAAGG 939
Query 936 TCGTAAAACGACGCCGTCTAACGAAGAGCTCGTGACGCTCTGCTCTGAGTTTCTTAACGG 995
||||||||||||||||||||| |||||||| ||| |||| ||||| ||||||||||||||
Sbjct 940 TCGTAAAACGACGCCGTCTAATGAAGAGCTTGTGTCGCTTTGCTCGGAGTTTCTTAACGG 999
Query 996 TGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGATAGCGCAGCTGATTGCGAATCC 1055
||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||
Sbjct 1000 GGGTACGGATACGACGGGGACGGCGATCGAGTGGGGTATCGCGCAGCTGATCGTGAATCC 1059
Query 1056 TGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGGTGGGAGAT-GATCGTAGGG 1114
|||||||||||||||||||||||||||||||||||||||||| |||||| | | | |||
Sbjct 1060 TGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGGTCGGAGATCG-T-G-AGGT 1116
Query 1115 TCGATGAGAAAGATGTGGACAAAATGGTCTTTTTACAAGCTTTTGTTAAGGAGCTTCTCC 1174
| || |||||||||||||| |||||||||||||||||||| | ||||||||| || | |
Sbjct 1117 T-GAGGAGAAAGATGTGGATAAAATGGTCTTTTTACAAGCCGTCGTTAAGGAGATTTTAC 1175
Query 1175 GGAAACATCCGCCGACTTATTTTTC-TCTGACGCA-TGCCGTTATGGAGACGACGACGCT 1232
|||||||||| ||||| || ||| | | |||| || | |||| | |||| |||||||| |
Sbjct 1176 GGAAACATCCTCCGACGTACTTTACGT-TGACTCACT-CCGTGACGGAGCCGACGACGGT 1233
Query 1233 TG-CTGGTTACGATATTCCCGCCGGCGTT-AACGTCGAGGTTTATCTTCCGGGTATTAGT 1290
| | ||||||||| |||||| || | | ||||||||| |||||||||||||||| | |
Sbjct 1234 CGGC-GGTTACGATGTTCCCGTTGG-GATCAACGTCGAGTTTTATCTTCCGGGTATAAAT 1291
Query 1291 GAGGATCCGA-GAATTTGGAATAACCCGAA-AAAGTTTGATCCGGACCGGTTTATGTT-G 1347
|||||||||| | ||||| | | ||||| ||| ||| | || || |||||||| || |
Sbjct 1292 GAGGATCCGAAGC-TTTGGTCTGATCCGAAGAAA-TTTAACCCTGATCGGTTTAT-TTCG 1348
Query 1348 GGTAAGGAAGATGCTGACATAACCGG-GATTAGTGGAGTAAAAATGATTCCGTTTGGTGT 1406
|||||||| || || ||||||||||| | | | ||||| |||||||| ||||||||| |
Sbjct 1349 GGTAAGGAGGAAGCGGACATAACCGGCG-TAACCGGAGTTAAAATGATGCCGTTTGGTAT 1407
Query 1407 GGGCCGTAGGATCTGTCCAGGACTTGCAATGGCAACCATACACGTCCATTTGATGCTTGC 1466
|||||| |||||||||| || || || ||||| ||| ||||||| || |||||||| ||
Sbjct 1408 TGGCCGTCGGATCTGTCCGGGGCTAGCGATGGCGACCGTACACGTGCACTTGATGCTAGC 1467
Query 1467 GCGGATGGTTCAGGAGTTCGAGTGGTGTGCTCATCCACCAGGAAGTGAGATTGATTTCGC 1526
| ||||||||| |||| |||||| | ||| |||| | |||||||| |||||||||||
Sbjct 1468 GAAGATGGTTCAACAGTTTGAGTGGAGCGCTTATCCGGCGGGAAGTGAAATTGATTTCGC 1527
Query 1527 CGGAAAATTGGAGTTTACGGTGGTGATGAAGAATCCGTTGAGAGCTATGGTCAAACCAAG 1586
|| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 1528 GGGGAAATTGGAGTTTACGGTGGTAATGAAGAAACCGTTGAGAGCCATGGTTAAACCAAG 1587
Query 1587 G 1587
|
Sbjct 1588 G 1588
> Ahg939863 jgi|Araly1|939863|scaffold_600407.1
Length=1561
Score = 896 bits (485), Expect = 0.0
Identities = 1147/1459 (79%), Gaps = 76/1459 (5%)
Strand=Plus/Plus
Query 172 AACCTTCCTCCAGGTCCGCCAGGTTGGCCGGTGG-TCGGAAACTTATTCCAGTTCGCGCG 230
||||| |||||||| || || ||||||||||||| | |||| | | || |||||||||||
Sbjct 120 AACCTCCCTCCAGGCCCACCGGGTTGGCCGGTGGTTGGGAATC-TGTTACAGTTCGCGCG 178
Query 231 CTCAGGTAAACCGTTTTTCGAATACG-CAGAGGATCTCAAGAAA-ACGTATGGCCCGATT 288
||| || |||| |||||||||||||| | || || | ||||| | ||| ||||| |||
Sbjct 179 CTCCGGGAAACAGTTTTTCGAATACGTC-GACGAGAT-GAGAAAGATGTACGGCCCAATT 236
Query 289 TTTACACTGAGAATGGGGACT-CGAACAATGATCATCCTCTCCGACGCAACTCTAGTC-C 346
|| || | || || |||| | ||||||||||||||| |||||||||||| ||| | | |
Sbjct 237 TTCACGTTAAGGAT-GGGAATCCGAACAATGATCATCATCTCCGACGCAAATCTCG-CAC 294
Query 347 ACGAAGCTTTGATCCAACGCGGAGCTCTCTTCGCTTCACGACCCGCCGAGAA-TCCGACC 405
|| |||| |||||| | || ||||| | ||||| | ||||||| ||| || ||||||
Sbjct 295 ACCAAGCCTTGATCGAGCGTGGAGCCCAATTCGCAACCCGACCCGTCGA-AACACCGACC 353
Query 406 C-GAACAATCTTCAGCTGC-AACAAAT-TCACCGTCAACGCCGCTAAATACGGTCCAGTG 462
| ||| ||||||||| | | | | || |||||||| | |||| | |||||||| |||
Sbjct 354 CGGAA-AATCTTCAG-TTCTAGC-GATATCACCGTCCATTCCGCGATGTACGGTCCCGTG 410
Query 463 TGGCGATCTCTGAGAAGAAACATGGTTCAGAACATGCTTAGCTC-AACAC-GTCTCAAGG 520
|||||| | |||||| | ||||||||||| |||||||| ||||| | | | || | ||||
Sbjct 411 TGGCGAACCCTGAGACGGAACATGGTTCAAAACATGCTCAGCTCTAGC-CGGT-TAAAGG 468
Query 521 AATTCGG-GAAACTGAGACAATCCGCCATGGATAAA-CTCATCGAGAGGATCAAATCGGA 578
|||| || || | ||| |||||||||| || ||| ||| | |||| ||||||||||||
Sbjct 469 AATTTGGTTTAA-TCAGAAAATCCGCCATTGA-AAAGCTCGTGGAGAAGATCAAATCGGA 526
Query 579 AGCTAGAG-ACAACGACGGGCTAATCTGGGTTCTT-AAAAACGCAAGATTCGCTGCGTTT 636
||||| || || |||| || || | |||||| || | |||||| ||||||||||| |||
Sbjct 527 AGCTAAAGAAC-ACGAAGGACTCGTTTGGGTT-TTGAGAAACGCTAGATTCGCTGCTTTT 584
Query 637 TGTATTC-TCTTGGAAATGTGTTTCGGAATCGAGATGGATGAAGAGA-CAATCGAGAAGA 694
|||| || | || || |||||||| |||||||| ||||| ||||| | | || |||||||
Sbjct 585 TGTA-TCTTGTTAGATATGTGTTTTGGAATCGAAATGGAAGAAGA-ATCGATTGAGAAGA 642
Query 695 TGGATGAGATTTTGA-AGACGGTGTTAAT-GACTGTTGATCCACGAA-TCGACGATTATC 751
||||| |||| ||| || | | ||||| | | ||||||||||||| || |||| || |
Sbjct 643 TGGATCAGATGATGACGGA-GATTTTAATCG-CCGTTGATCCACGAATTC-ACGACTACC 699
Query 752 TTCCGATTCTTGCTCCGTTCTT-C-TCTAAAGAGAGGAAACGAGCTCTCGAAGTTCGCCG 809
|||||||||| ||||||| || | || || ||||| ||| |||||| ||| |||||||
Sbjct 700 TTCCGATTCTAACTCCGTT-TTACTTC-AACGAGAGAAAAAAAGCTCTGGAACTTCGCCG 757
Query 810 TG-AACAAGTCG-ATTACGTCGTCGGAGTT-ATCGAG-AGACGACGGA--GAGCGATTCA 863
| ||| |||| ||| ||| |||||| || |||||| || |||| || | ||| |||
Sbjct 758 -GAAACTTGTCGAATT-CGTTGTCGGA-TTCATCGAGAAG-CGAC-GATCG-GCGGTTC- 810
Query 864 G-AATCCAGGATCTGATAAAACGGCGTCGTCTTTTTCATA-CTTAGATACACTCTTTGAT 921
| ||||| || || |||||||||||| ||||||| | || ||| ||||| | || |||
Sbjct 811 GAAATCCCGGCTCCGATAAAACGGCGACGTCTTTCGCGTATCTT-GATACTTTATTCGAT 869
Query 922 TTAAAAATCGAAGGTCGTAAAACGACGCCGTCTAACGAAGAGCTCGTGACGCTCTGCTCT 981
| | | |||| || ||| |||||||||||||| | ||||| |||||||| || |||||
Sbjct 870 CTCAGAGTCGATGGCCGTGAAACGACGCCGTCTGATGAAGATCTCGTGACTCTGTGCTCG 929
Query 982 GAGTTTCTTAACGGTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGATAGCGCAG 1041
|||||||| |||| |||||||||||||||||||||||||| || ||||| || ||| ||
Sbjct 930 GAGTTTCTCAACGCCGGTACGGATACGACGGGGACGGCGATTGAATGGGGAATCGCGGAG 989
Query 1042 CTGATTGCGAATCCTGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGGTGGGA 1101
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 990 CTGATTTCGAATCCAGAGATTCAATCTCGGCTGTACGATGAGATTAAATCAACGGTGGGA 1049
Query 1102 GATGATCGTAGGGTCGATGAGAAAGATGTGGACAAAATGGTCTTTTTACAAGCTTTTGTT 1161
|||||||||| ||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1050 GATGATCGTACGGTAGAGGAGAAAGATGTGGATAAAATGGTCTTCTTACAAGCTTTTGTT 1109
Query 1162 AAGGAGCTTCTCCGGAAACATCCGCCGACTTATTTTTC-TCTGACGCATGCCGTTATGGA 1220
|||||||||||||||| |||||||||||| ||||| | | | || || | ||||| |||
Sbjct 1110 AAGGAGCTTCTCCGGAGACATCCGCCGACGTATTTCACGT-TAACTCACGGCGTTACGGA 1168
Query 1221 GACGACGACGCT-TGCTGGTTACGATATTCCCGCCGGCGTTAACGTCGAGGTTTATCTTC 1279
| |||||| || | | ||||||||||||| | || | ||| || ||| |||||||||
Sbjct 1169 GCCGACGAATCTCTCC-GGTTACGATATTCTGGTTGGAGCTAATGTTGAGTTTTATCTTC 1227
Query 1280 CGGGTATTAGTGAGGATCCGA-GAATTTGGAATAACCCG-AAAAAGTTTGATCCGGACCG 1337
|||||||||| ||||| |||| || | ||| ||| ||| ||||| || || ||| ||||
Sbjct 1228 CGGGTATTAGCGAGGACCCGAAGA-TCTGGTCTAAACCGGAAAAA-TTCGACCCGAACCG 1285
Query 1338 GTTTATGTTGGGTA-AGGAAGATGCTGACATAACCGGGATTAGT-GGAGTAAAAATGATT 1395
|||||| ||| || |||| || || ||||||| | | | || || || |||||
Sbjct 1286 GTTTATAACAGGTGGAG-AAGACGCCGATTTAACCGG-AGTCGCCGGGGTTAAGATGATG 1343
Query 1396 CCGTTTGGTGTGGGCCGTAGGATCTGTCCAGGACTTGCAATGGCAACCATACACGTCCAT 1455
||||| || | |||||| |||| || || || |||| ||||||| ||||||| |
Sbjct 1344 CCGTTCGGAATTGGCCGTCGGATTTGCCCGGGGCTTGGAATGGCAGTGGTACACGTGGAG 1403
Query 1456 TTGATGCTTGCGCGGATGGTTCAGGAGTTCGAGTGGTGTGC-TCATCCACCAGGAAGTGA 1514
| ||||| ||| |||||||||| |||||||||||| | | | || || || || |
Sbjct 1404 CTAATGCTAGCGAGGATGGTTCAAGAGTTCGAGTGGACCACGT-ACCCGCCGGGGAGCCA 1462
Query 1515 GATTG-ATTTCGCCGGAAAATTGGAGTTTACGGTGGTGATGAAGAATCCGTTGAGAGCTA 1573
| || ||||| |||| ||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 1463 -AGTGGATTTCACCGGCAAATTGGTGTTCGCGGTGGTGATGAAGAATCCGTTGAGAGCGA 1521
Query 1574 TGGTCAAACCAAGGATTTA 1592
||| ||| | ||| ||||
Sbjct 1522 GGGTTAAAGCTAGGGTTTA 1540
> Ahg478391 jgi|Araly1|478391|fgenesh2_kg.3__1092__AT3G10560.1
Length=1765
Score = 769 bits (416), Expect = 0.0
Identities = 1140/1476 (77%), Gaps = 103/1476 (7%)
Strand=Plus/Plus
Query 163 AAA-CGTTTAAACCTTCCTCCAGGTCCGCCAGGTTGGCCGGTGGTCGGAAACTTATTCCA 221
||| |||||||| || || ||||| || ||||| || |||||| ||||||||||||| ||
Sbjct 128 AAACCGTTTAAATCTCCCGCCAGGCCCACCAGGATGTCCGGTGATCGGAAACTTATTTCA 187
Query 222 GTTCGCGCGCTCAGGTAAACCGTTTTTCGAATACGCAGAGGATCTCAAG-AAA-A-CGTA 278
|||| | ||||| || |||| ||||||||| |||| ||||||||| | ||| | | ||
Sbjct 188 GTTCACTCGCTCCGGGAAACAGTTTTTCGAGTACGTTGAGGATCTC--GTAAAGATC-TA 244
Query 279 TGGCCCGATTTTTACACTGAGAATGGGGACTCGAACAATGATCATCCTCTCCGACGCAAC 338
|| |||||| |||| || || | || |||||||||||||||||| |||||||| | |
Sbjct 245 CGGTCCGATTCTTACTCTCAGGCTTGGTACTCGAACAATGATCATCATCTCCGACTCGAG 304
Query 339 TCTAGTCCACGAAGCTTTGATCCAACGCGGAGCTCTCTTCGCTTCACGACCCGCCGAGAA 398
||| | ||| ||||| || ||| |||| ||||| | ||||| | ||||||| || ||
Sbjct 305 TCTCGCCCATGAAGCGTTAATCGAACGTGGAGCCCAATTCGCGACCCGACCCGTTGA-AA 363
Query 399 -TCCGACCC-GAACAATCTTCAGCTGCA-ACAAATTCACCG-TCAACGCCGCTAAATACG 454
|||||||| ||| ||| ||||||| || ||| |||| | || | |||| | || |
Sbjct 364 CTCCGACCCGGAA-AATATTCAGCTCCAGTGAAA-TCACAGTTC-ATTCCGCCATGTATG 420
Query 455 GTCCAGTGTGGCGATC-TCTGAGAAGAAACATGGTTCAGAACATGCTTAGCTC-AACACG 512
| || |||||| | || | ||||| | |||||||||||||||||||||||||| || ||
Sbjct 421 GACCTGTGTGGAGGTCAT-TGAGACGGAACATGGTTCAGAACATGCTTAGCTCGAA-TCG 478
Query 513 TCTCAAGGAATTCGGGAAACTG--AGACAATCCGCCATGGATAAACTCATCGAGAGGATC 570
||||||| || || ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 479 GATCAAGGAGTT-TGG-TTCTGTTAGAAAATCCGCCATGGATAAACTCATCGAGAGGATC 536
Query 571 AAATCGGAAGCTAGAGACAACGACGGGCTAATCTGGGTTCTTAAAAAC-GCAAGATTCGC 629
|||| |||||||||| |||||| || || |||||||||| |||||| | | ||| |||
Sbjct 537 GAATCTGAAGCTAGAGGCAACGAAGGACTCGTCTGGGTTCTGAAAAACAGTA-GATACGC 595
Query 630 TGCGTTTTGTATTCTCTTGGAAATGTGTTTCGGAATCGAGATGGATGAAGAGA-CAATCG 688
|||||||||| || | || || |||||||| || | |||||||| || || | |||| |
Sbjct 596 TGCGTTTTGTGTTTTGTTAGATATGTGTTTTGGGGTTGAGATGGAAGAGGA-ATCAATTG 654
Query 689 AGAAGATGGATGAGATTT-TGAAGACGGTGTTAAT-GACTGTTGATCCACGAA-TCGACG 745
||||||||||| || || ||| | || | |||| | | |||||||| || || |||
Sbjct 655 AGAAGATGGATCAG-TTGATGACGGCGATATTAAACGCCA-TTGATCCAA-AACTCCACG 711
Query 746 ATTATCTTCCGATTCTTG-CTCCGTTCTTCTCTA-AA-GAGAG-GAAACGAGCTCTCGAA 801
|||| |||||||| ||| | ||||| | ||| || ||||| || || ||||| |||
Sbjct 712 ATTACCTTCCGAT-CTTAACGCCGTT-TAA-CTACAATGAGAGAGAT-CGCGCTCT-GAA 766
Query 802 G-TTCGCCGTGAACAAGTCGATTACGTCGTCGGAGTT-ATCGAGAGACGACGGAGAGCGA 859
| ||||||| |||| || |||| ||||||| | || ||||||| | ||||||| | ||
Sbjct 767 GCTTCGCCGAGAACTTGTAGATTTCGTCGTCAAA-TTCATCGAGAAAAGACGGAGGGTGA 825
Query 860 TTCAGAATCCAGGATCTGATAAAACGGCGTCGTCTTTTTCATA-CTTAGATACACTCTTT 918
||| | | ||| || || ||||||||||||| || || ||| ||||||||||||
Sbjct 826 TTC----T---G-ATC-GA-AA--CGGCGTCGTCTTTCTCGTATCTT-GATACACTCTTT 872
Query 919 GAT-TTAAAAATCG-A-A-GGTCGTAAAACGACGCCGTCTAACGAAGAGCTCGTGACGCT 974
||| ||| | ||| | | || || |||||||||||||| | ||||| || || |||||
Sbjct 873 GATCTTAGAG-TCGTAGAAGGAAGTGAAACGACGCCGTCTGATGAAGATCTTGTAACGCT 931
Query 975 CTGCTCTGAGTTTCTTAACGGTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGA- 1033
||| || |||||||| || | || ||||||||||||||| |||||||||||||||| |
Sbjct 932 CTGTTCGGAGTTTCTCAATGCCGGCACGGATACGACGGGGGCGGCGATCGAGTGGGG-AC 990
Query 1034 TAGC-GCAGCTGATTGCGAATCCTGAGATTCAATCTCGGCTCTACGATGAGATTAAATCA 1092
| || | || |||| |||||||| |||||||||||||| || |||||||||||||||| |
Sbjct 991 TCGCAG-AGTTGATAGCGAATCCCGAGATTCAATCTCGACTGTACGATGAGATTAAATTA 1049
Query 1093 ACGGTGGGAGATGATCGTAG-GGTCGATGAGAA-AGATGTGGACAAAATGGTCTTTTTAC 1150
||||| |||||| ||| | ||||||||| | ||||||||| ||||||||||||||||
Sbjct 1050 ACGGTTGGAGAT---CGT-GCGGTCGATGA-ACGAGATGTGGAAAAAATGGTCTTTTTAC 1104
Query 1151 AAGCTTTTGTTAAGGAGCTTCTCCGGAAACATCCGCCGACTTATTTTTC-TCTGACG-CA 1208
||||| | || |||||| |||||||| |||||| |||||||| ||| | | | | | ||
Sbjct 1105 AAGCTGTAGTCAAGGAGATTCTCCGGCGACATCCACCGACTTACTTTACAT-TAA-GTCA 1162
Query 1209 TGCCGTTATGGAGAC-GACGACGCT-TGCTGGTTACGATATTCCC-GCCGGCGTTAACGT 1265
| || | ||| || ||| || || | |||| || | || ||| | ||| || ||| |
Sbjct 1163 CGGTGTAACGGA-ACCGACTACTCTCT-CTGGCTATAACAT-CCCAGTCGGGGTCAACAT 1219
Query 1266 CGAGGTTTATCTTCCGGGTATTAGTGAGGATCCGA-GAATTTGGAATAACCCGAAAAAGT 1324
||| ||||||||||||| ||||| || || |||| || | ||| | ||||||||||
Sbjct 1220 TGAGTTTTATCTTCCGGGAATTAGCGAAGACCCGAAGA-TCTGGTCCGAGCCGAAAAAGT 1278
Query 1325 TTGATCCGGACCGGTT-T-ATGTTGGGTAAGGAAGATGCTGACATAACCGGGATTAG-TG 1381
|||| ||||||||||| | || ||| |||||| || || ||||| || | | | ||
Sbjct 1279 TTGACCCGGACCGGTTCTTATCA-GGGCG-GGAAGACGCCGATATAACAGG-AGTCGCTG 1335
Query 1382 GAGTAAAAATGATTCCGTTTGGTG-TGGGCCGTAGGATCTGTCCAGG-ACTTGCAATGGC 1439
|||| || ||||| || ||||||| ||| ||||||||||||||| || | | | ||||||
Sbjct 1336 GAGTGAAGATGATGCCTTTTGGTGCTGG-CCGTAGGATCTGTCCGGGGA-TGGGAATGGC 1393
Query 1440 AACCATACACGTCCATTTGATGCTTGCGCGGATGGTTCAGGAGTTCGAGTGGTGT-GC-T 1497
||| |||| || ||||||||| | || ||||||||||| ||||| ||||||| | || |
Sbjct 1394 AACGGTACATGTGCATTTGATGATAGCACGGATGGTTCAAGAGTTTGAGTGGT-TCGCCT 1452
Query 1498 CATCCACCAGGA-AGTGAGATTGATTTCGCCGGAAAATTGGAGTTTACGGTGGTGATGAA 1556
||||||| | | || ||| | ||||| || || | |||| |||| |||| ||||||||
Sbjct 1453 -ATCCACC-GCAGAGCGAGGTAGATTTTGCTGGGAGGTTGGTGTTTGCGGTTGTGATGAA 1510
Query 1557 GAATCCGTTGAGAGCTATGGTCAAACCAAGGATTTA 1592
||| ||||||||||| ||||| | ||| ||| ||||
Sbjct 1511 GAAGCCGTTGAGAGCCATGGTTAGACCTAGGGTTTA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62848904250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5