BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04700.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325107 jgi|Araly1|325107|fgenesh1_pm.C_scaffold_6000327 3314 0.0
Ahg892386 jgi|Araly1|892386|Al_scaffold_0006_382 1594 0.0
Ahg892382 jgi|Araly1|892382|Al_scaffold_0006_378 1245 0.0
> Ahg325107 jgi|Araly1|325107|fgenesh1_pm.C_scaffold_6000327
Length=2010
Score = 3314 bits (1794), Expect = 0.0
Identities = 1942/2014 (96%), Gaps = 8/2014 (0%)
Strand=Plus/Plus
Query 1 ATGGCAATGAGTTCTAATTACTTA-GACGCAACTTTGAAGGAAACATTTCGGAGGAGCCC 59
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATGAGTTCTAATTACTTATG-CGCAACTTTGAAGGAAACATTTCGGAGGAGCCC 59
Query 60 TTTCAAATTCGCTAATACAAAGGTTCCTCATGCTGGTCTAGGCGACAGTGTCTCTCCTAT 119
|||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 60 TTTCAAATTCGCTAATACAAAGGTTCCTCATGCTGGCCTAGGCGACAGTATTTCTCCTAT 119
Query 120 AAAAGAAGTTCCTGAAGAAGAAGAAGTTCCAAATGACCCCGTCAATATCCAGATTCCATT 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 120 AAAAGAAGTTCCTGAAGAAGAAGAAGTTCCAAATGATCCCGTCAATATCCAGATTCCGTT 179
Query 180 CATCGAATCAGCTCTTTCCACATCTCGGCTTCGCGGAAAGAATACGAACGTATATTATGA 239
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CATCGAATCAGCTCTTTCCGCATCTCGGCTCCGCGGAAAGAATACGAACGTATATTATGA 239
Query 240 GTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTGTAGAAATCGTGAAGGACTTCTT 299
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 240 GTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTTTAGAAGTCGTGAAGGACTTCTT 299
Query 300 GAATCATCATCCGGACTCAGTGGACGAATGGATAAACCTTTACGAGACGCCATTGTTAAA 359
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GAACCATCATCCGGACTCAGTGGACGAATGGATAAACCTTTATGAGACGCCATTGTTAAA 359
Query 360 GGCTTGTGCGTGTGGGAAACCCGAGATTGTTAAAGAGCTTCTACGTCGTATGACACCTGA 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCTTGCGCGTGTGGGAAACCCGAGATTGTTAAAGAGCTTCTACGTCGTATGACACCTGA 419
Query 420 ACAAATGCTTCCCAAGATGAGCCAAAACGCTTCATACCACACGCCTCTCACTGTTGTTGC 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 ACAAATGCTTCCCAAGATGAGCCAAAACGCTTCCTACCACACGCCTCTCACTGTTGTTGC 479
Query 480 GGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAGTCGCCAAGAACCCTAAGCTGCTAGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAGTCGCCAAGAACCCTAAGCTGCTAGA 539
Query 540 GATTCCTGGAATCAATGGACAAATTCCGGTTGTGGTTGCGGTTGAGAATACACAGATGGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATTCCTGGAATCAATGGACAAATTCCGGTTGTGGTTGCGGTTGAGAATACACAGATGGA 599
Query 600 GATGGCTCGCTATCTTTACACCAGAACTCCGGTTCAAGTGTTACTTGACCAAGATGGGTA 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGGCTCGCTATCTTTACTCCAGAACTCCGGTTCAAGTGTTACTTGACCAAGATGGGTA 659
Query 660 TCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAATGCTTGACATCGCGTTGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAATGCTTGACATCGCGTTGGA 719
Query 720 TCTGTTCAACATGAGCAGACGCTTAGCCGTCACAAAACACTCGCAAATCGAGTCGATACC 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 720 TCTGTTCAACATGAGCAGACGCTTAGCCGTCACAAAACACTTGCAAATCGAGTCGATTCC 779
Query 780 CATCATTGTCTTGGCTTCAAAGCCAGATCTTTTTCCTGGTGGCTGCTATCTTGGACCATT 839
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CATCATTGTCTTGGCTTCAAAGCCAGATCTTTTTCCTGGTGGCTGCTATCACGGACCATT 839
Query 840 GACACGTTTCATCTACTCTTGGATACAAGTAAAGCTGCCAACTCTTCCACAGCCTTCTCG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GACACGTTTCATCTACTCTTGGATACAAGTAAAGCTGCCAACTCTTCCACAGCCTTCTCG 899
Query 900 TTCAAACAGAGATCAGCAGAATACTCTGATGAGGAAACTGCTCAAAGGCCTCTCCAAATG 959
|| |||||||||||| ||||||||||||||| ||| |||| | |||||||||||||||||
Sbjct 900 TTTAAACAGAGATCATCAGAATACTCTGATGGGGAGACTGTTGAAAGGCCTCTCCAAATG 959
Query 960 GACTGGAATAGATGAAGTGTACCGACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCT 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GACCGGAATAGATGAAGTGTACCGACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCT 1019
Query 1020 ACTG-GGAATATCAGAAGAAACATTGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGG 1078
|| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1020 AC-GAGGAATATCAGAAGAAACACTGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGG 1078
Query 1079 ATGAGGCTTTACTCTTTGCAGTGAGATATGGGAATGTGGATTTCTTGGTGGAAATGATCA 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 ATGAGGCTTTACTCTTTGCAGTGAGATATGGGAATGTGGATTTCTTGGTGGAGATGATCA 1138
Query 1139 -GAAACAACTCCGAGCTTCTATGGTCCACGAGAACAAGCTCGAGCAGTACTCTGTTTCTC 1197
||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 AGAA-CAACTCTGAGCTTCTATGGTCCACGAGAACAAGCTCAAGCAGTACTCTGTTTCTC 1197
Query 1198 TTGGCCGTCGAGTTCAGACAAGAGAAGGTGTTTAGTCTCCTATACGGTCTGGACGACAGA 1257
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 TTGGCGGTCGAGTTCAGACAAGAGAAGGTGTTTAGTCTCCTCTACGGTCTGGACGACAGG 1257
Query 1258 AAGTACTTGTTGCTCGCAGACAAGGACTGTGATGGAAATGGTGTGCTTCATCTCGCTGGC 1317
||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| |||
Sbjct 1258 AAGTACTTGTTACTCGCCGACAAGGACTGTGACGGCAATGGTGTGCTTCATCTCGCCGGC 1317
Query 1318 TTTCCGTCTCCTCCTTCCAAGCTCTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGC 1377
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTTCCTTCTCCTCCTTCCAAGCTCTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGG 1377
Query 1378 GAGTTACAATGGTTCAAGGAAGTGGAGAGAATCGCACCGGAGATCGAGAAGGAGAGAGTA 1437
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1378 GAGTTACAATGGTTCAAGGAAGTGGAGAGAATCGCACCGGAGATTGAGAAGGAAAGAGTA 1437
Query 1438 AACACAGAAGAGCAAACACCGATCGAGATATTCACAAAGGAGCACCAAGGACTGCGACAA 1497
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 AACACAGAAGAGCAAACACCGATCGAGATATTCACAAAGGAACACCAAGGACTGCGACAA 1497
Query 1498 GAAGCAGAGAAATGGATGAAAGACACGGCTATGTCATGCAGCTTAGTCGCGGCACTCATC 1557
||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1498 GAAGCCGAGAAATGGATGAAAGACACGGCCATGTCATGCAGCTTAGTCGCAGCTCTCATT 1557
Query 1558 GTCACGGTCACCTTTGCGGCGGTCTTCACTGTCCCTGGTGGCACAGACGACAATTCAAAA 1617
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1558 GTTACGGTCACCTTTGCGGCGGTCTTCACCGTCCCTGGTGGCACTGACGACAATTCAAAA 1617
Query 1618 GGTAAACCCTTTCACCTACG-TGATCGGCGATTCATCATATTCATCGTCTCAGATTTGAT 1676
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGTAAACCCTTTCACCTA-GATGATCGGCGATTCATCATATTCATCGTCTCAGATTTGAT 1676
Query 1677 CTCCTGCTTCGCCTCTTGCACCTCCGTCCTCATCTTCCTCGGGATACTAACCGCAAGATA 1736
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1677 CTCTTGCTTCGCCTCTTGCACCTCCGTCCTCATCTTCCTCGGGATTCTAACCGCAAGATA 1736
Query 1737 CTCCTTCGACGATTTCTTGGTCTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CTCCTTCGACGATTTCTTGGTCTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACT 1796
Query 1797 GTTCGTTTCAATAGCGGCGATGCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGG 1856
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 GTTCGTTTCAATTGCGGCGATGCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGG 1856
Query 1857 TAAAGAAGGGAAATGGATTGTTGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTT 1916
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TAAAGAAGGGAAATGGATCGTTGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTT 1916
Query 1917 GTTTGTTCTGCTTCAGTATCCTCTCCTCAAGGAAATGATCTTCTCCACTTATGGAAAAGG 1976
||||||||| |||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 1917 GTTTGTTCTACTTCAGTATCCTCTCCTCAAGGAAATGATCTTTTCAACTTACGGCAAAGG 1976
Query 1977 GATCTTTGACAGAAACATGAAATGTTGGGCCTAA 2010
||||| ||||||| |||||||||||||| |||
Sbjct 1977 AATCTTCAACAGAAATATGAAATGTTGGGCTTAA 2010
> Ahg892386 jgi|Araly1|892386|Al_scaffold_0006_382
Length=1950
Score = 1594 bits (863), Expect = 0.0
Identities = 1505/1808 (83%), Gaps = 71/1808 (4%)
Strand=Plus/Plus
Query 229 GTATATTATGAGTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTGTAGA-AATCGT 287
||||| ||||| ||||| ||||||||| |||||||||||||||| |||||| || ||
Sbjct 175 GTATACTATGATTATATGCAATTAAGTAAAGGAATAAGCCAAGGGAATGTAGAGGAT-GT 233
Query 288 GAAGGACTTCTTGAATCATCA-TCC-GGACTCAGTGGACGAATGGATAAACCTTTACGAG 345
||| || |||||||| | | ||| || | ||||||||||||||||||||| |||||||
Sbjct 234 GAAAGATTTCTTGAA-CCGAAGTCCAGG-CGCAGTGGACGAATGGATAAACCCTTACGAG 291
Query 346 ACGCCATTGTT-AAAGGCTTGTGCGTGTGGGAA-ACCCGAGATTGTTAAAGAGCTTCTAC 403
|| ||| |||| ||| ||||| || | | |||| ||||||||||||||||| |||||| |
Sbjct 292 ACACCACTGTTGAAA-GCTTGCGCATAT-GGAAGACCCGAGATTGTTAAAGTGCTTCTTC 349
Query 404 GTCGTATGACACCTGAACAAATGCTTCCCAAGATGAGCCAAAACGCTTCATACCACACGC 463
|||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 350 GTCGCATGAAACCTGAACAAATGCTTCCCAAGATGAGCCATAACACTTCATACCACACAC 409
Query 464 CTCTCACTGTTGTTGCGGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAG-TCGCCAAG 522
||||||||||||| || || | ||||||||||||||||| || ||| | | | ||||
Sbjct 410 CTCTCACTGTTGTAGCAGTCACCGGAAACATGGAGATTGCCAAATACTT-GCTTGGCAAG 468
Query 523 AACCCTAAGCTGCTAGAGATTCCTGGAATCAATGGACAAATTCCGGTTGTGGTTGCGGTT 582
||| | ||||||| |||| || || || |||||||| |||| | |||||||| ||
Sbjct 469 AACTTTGGGCTGCTAAAGATGCCGGGCATGAATGGACAGCTTCCAGCCGTGGTTGCAATT 528
Query 583 GAGAATACACAGATGGAGATGGCTCGCTATC-TTTACACCAGAACTCCG-GTTCAAGTGT 640
||||| || | ||||||||||| || | |||||| | |||| | |||| |||
Sbjct 529 GAGAACGGGCATAAAGAGATGGCTCGGTA-CTTTTACATGAAAACTATGCGTTC-TCTGT 586
Query 641 TACTTGACCAAGATGGGTATCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAA 700
||||||| | |||||||| |||||| | |||||| || |||| ||||||| ||| ||||
Sbjct 587 TACTTGATGAGGATGGGTACCACGGTACCTTGCTCATTATCAACGCCATCTACTACAAAA 646
Query 701 TGCTTGACATCGCGTTG-G--ATC--TGTTCAACATGAGCA-G--ACGCTTAGCCGTCAC 752
|| | ||||| |||||| | || || ||| | || || | || ||| ||||||||
Sbjct 647 TGATCGACATTGCGTTGTGTTTTCTTTGCGCAA-A-GA-CACGCTAC-CTT-GCCGTCAC 701
Query 753 AAAACACTCGCAAATCGAGTCGA-TACCCATCATTGTCTTGGCTTCAAAGCCAGATCTTT 811
|||||||| ||| || ||||||| | |||||||| || || |||||||| || || ||||
Sbjct 702 AAAACACTTGCAGATAGAGTCGACT-CCCATCATCGTTTTAGCTTCAAAACCGGACCTTT 760
Query 812 TTCCTGGTGGCTGCTATCTTGGACCATT-GACACG-TTTCATCTACTCTTGGATACAAGT 869
|||| | |||||| ||| |||||||| || ||| || || ||| ||| ||||||||
Sbjct 761 TTCCCAGCGGCTGCCGTCTCGGACCATTGGA-ACGCATT-ATATACGATTGTATACAAGT 818
Query 870 AAAGCTGCCA-ACTCTTCCACAGCCTT-CTCGT-T-C-AAACAGAGATCAGCAGAA-TAC 923
|||||| || || | | ||| || | | | | ||| | ||||||||| || |||
Sbjct 819 AAAGCT-TCAGGCTAAT-C-CAG-GTTGGTTTTATCCGAAA-AAAGATCAGCA-AACTAC 872
Query 924 TCTGATGAGGAAACTGCTCAAAG-GCCTCTCCAAATGGACTGGAATAGATGAAGTGTACC 982
||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 873 CCTGATGAGGAAGCTGCT-TAAGTGTCTCTCCAAATGGACTGGAATAGATGAAGTGTACC 931
Query 983 GACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCTACTGGGAATATCAGAAGAAACAT 1042
||| ||||| |||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 932 AACTGAAGGTTATGCATCTACAAGCCAAGAAGCTTTTATTGGTAATATCAGAAGAAACAC 991
Query 1043 TGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGGATGAGGCTTTACTCTTTGCAGTGA 1102
|||| |||| || |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 992 GGGCCATGGGATTAAAGGAACGTTCCGAGACAGTGGGTGAGGCCTTACTCTTTGCAGTGA 1051
Query 1103 GATATGGGAATGTGGATTTCTTGGTGGAAATGATCA-GAAACAACTCCGAGCTTCTATGG 1161
| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1052 GGTATGGGAATGTGGATTTCTTGGTGGAGATGATCAAGAA-CAACTCCGAGCTTCTATGG 1110
Query 1162 TCCACGAGAACAAGCTCGAGCAGTACTCTGTTTCTCTTGGCCGTCGAGTTCAGACAAGAG 1221
||||||| ||| |||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1111 TCCACGAAAACGAGCTTGAGTAGAACTCTGTTTCTCTTGGCCGTCGAGTTGAGACAAGAA 1170
Query 1222 AAGGTGTTTAGTCTCCTATACGGTCTGGACGACAGAAAGTACTTGTTGCTCGCAGACAAG 1281
|| ||||||||||| || |||||||||||||| || |||||||||||||| || || |||
Sbjct 1171 AAAGTGTTTAGTCTACTCTACGGTCTGGACGATAGGAAGTACTTGTTGCTTGCGGA-AAG 1229
Query 1282 G-ACTGTGATGGAAATGGTGTGCTTCATCTCGCTGGCTTTCCGTCTCCTCCTTCCAAGCT 1340
| |||||||||| |||||| ||||||||||||| |||| || |||||||||| ||||||
Sbjct 1230 GGACTGTGATGGCAATGGTATGCTTCATCTCGCCGGCTATCTTTCTCCTCCTTGCAAGCT 1289
Query 1341 CTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGCGAGTTACAATGGTTCAAGGAAGT 1400
||||| || ||||||| ||||| || ||||||| |||||||||||||||||||||||
Sbjct 1290 CTCTACCGTTACTGGCGCAGCTTTGAAGATGCAACGTGAGTTACAATGGTTCAAGGAAGT 1349
Query 1401 GGAGAGAATCGCACCGGAGATCGAGAAGGAGAGAGTAAACACA-GAAGAGCAAACACCGA 1459
||||| ||| | ||| ||||| |||||| |||||||||||||| | || |||||||| |
Sbjct 1350 GGAGAAAATTGTACCAGAGATGGAGAAGCAGAGAGTAAACACAAGTGGA-CAAACACCAA 1408
Query 1460 TCGAGATATTCACAAAGGAGCACCAAGGACTGCGACAAGAAGCAGAGAAATGGATGAAAG 1519
|||||||||||||||||||||||||| | |||| |||||||| |||||||| ||||||
Sbjct 1409 TCGAGATATTCACAAAGGAGCACCAAACATTGCGGCAAGAAGCTGAGAAATGTATGAAAT 1468
Query 1520 ACACGGCTATGTCATGCAGCTTAGTCGCGGCACTCATCGTCACGGTCACCTTTGCGGCGG 1579
||||||| ||||| ||||||||||||||| | ||||| ||||||||||||| ||||| |
Sbjct 1469 ACACGGCGATGTCGTGCAGCTTAGTCGCGACTCTCATATTCACGGTCACCTTCGCGGCCG 1528
Query 1580 TCTTCACTGTCCCTGGTGGCACAGACGACAATTCAAAAGGTAAACCCTTTCACCTACGTG 1639
||||||| ||||| || | | |||| ||| | || |||||||||||||||||||
Sbjct 1529 TCTTCACCGTCCC------CA-A--CTACAACTCACACGGCAAACCCTTTCACCTACGTG 1579
Query 1640 ATCG-GCGATTCATCATATTCATCGTCTCAGATTTGATCTCCTGCTTCGCCTCTTGCACC 1698
|||| || |||| || |||| ||||||| ||| |||||||||||||||| ||||||||
Sbjct 1580 ATCGTGCT-TTCACCACATTCGTCGTCTCCGATCTGATCTCCTGCTTCGCAGCTTGCACC 1638
Query 1699 TCCGTCCTCATCTTCCTCGGGATACTA-ACCGCAAGATACTCCTTCGACGATTTCTTGGT 1757
||||||||||| ||||||||||||| | |||||||| ||||||||||| ||||||||| |
Sbjct 1639 TCCGTCCTCATTTTCCTCGGGATAC-ACACCGCAAGGTACTCCTTCGATGATTTCTTGTT 1697
Query 1758 CTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACTGTTCGTTTCAATAGCGGCGAT 1817
|| || ||| |||||||||| |||||||| || ||||||||||||||||| | ||| ||
Sbjct 1698 CTCGCTACCGGCAAAGATGATCGCCGGACTCTCCATACTGTTCGTTTCAATCGGGGCAAT 1757
Query 1818 GCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGGTAAAGAAGGGAAATGGATTGT 1877
|||||| || ||||||||||| |||||||||||||||| |||||| | |||||||| ||
Sbjct 1758 GCTTATTGCCTTCTCGTCGGCCCTATTCACGATGATGGATAAAGA-G--AAATGGATCGT 1814
Query 1878 TGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTTGTTTGTTCTGCTTCAGTATCC 1937
|||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1815 TGCTCCGACGATCCTTCTCGCTTGTTTACCGGCGCTGCTGTTTGTTCTGCTTCAGTATCC 1874
Query 1938 TCTCCTCAAGGAAATGATCTTCTCCACTTATGGAAAAGGGATCTTTGACAGAAACATGAA 1997
||||||||| ||||||||||| || ||||| || ||||| ||||| | ||||||||||||
Sbjct 1875 TCTCCTCAAAGAAATGATCTTTTCGACTTACGGCAAAGGAATCTTCGGCAGAAACATGAA 1934
Query 1998 ATGTTGGG 2005
||||||||
Sbjct 1935 ATGTTGGG 1942
> Ahg892382 jgi|Araly1|892382|Al_scaffold_0006_378
Length=1980
Score = 1245 bits (674), Expect = 0.0
Identities = 1074/1263 (85%), Gaps = 43/1263 (3%)
Strand=Plus/Plus
Query 741 CTTAGCCGTCACAAAACACTCGCAAATCGAGTCGA-TACCCATCATTGTCTTGGCTTCAA 799
||| |||||||||||||||| ||| || ||||||| | |||||||| || || |||||||
Sbjct 739 CTT-GCCGTCACAAAACACTTGCAGATAGAGTCGACT-CCCATCATCGTTTTAGCTTCAA 796
Query 800 AGCCAGATCTTTTTCCTGGTGGCTGCTATCTTGGACCATT-GACACG-TTTCATCTACTC 857
| || || |||||||| | |||||| ||| |||||||| || ||| || || |||
Sbjct 797 AACCGGACCTTTTTCCCAGCGGCTGCCGTCTCGGACCATTGGA-ACGCATT-ATATACGA 854
Query 858 TTGGATACAAGTAAAGCTGCCA-ACTCTTCCACAGCCTT-CTCGT-T-C-AAACAGAGAT 912
||| |||||||||||||| || || | | ||| || | | | | ||| | ||||
Sbjct 855 TTGTATACAAGTAAAGCT-TCAGGCTAAT-C-CAG-GTTGGTTTTATCCGAAA-AAAGAT 909
Query 913 CAGCAGAA-TACTCTGATGAGGAAACTGCTCAAAG-GCCTCTCCAAATGGACTGGAATAG 970
||||| || ||| ||||||||||| ||||| ||| | ||||||||||||||||||||||
Sbjct 910 CAGCA-AACTACCCTGATGAGGAAGCTGCT-TAAGTGTCTCTCCAAATGGACTGGAATAG 967
Query 971 ATGAAGTGTACCGACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCTACTGGGAATAT 1030
|||||||||||| ||| ||||| |||||||||||||||||||||||| || ||| |||||
Sbjct 968 ATGAAGTGTACCAACTGAAGGTTATGCATCTACAAGCCAAGAAGCTTTTATTGGTAATAT 1027
Query 1031 CAGAAGAAACATTGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGGATGAGGCTTTAC 1090
||||||||||| |||| |||| || |||||||||||||||||||||| |||||| ||||
Sbjct 1028 CAGAAGAAACACGGGCCATGGGATTAAAGGAACGTTCCGAGACAGTGGGTGAGGCCTTAC 1087
Query 1091 TCTTTGCAGTGAGATATGGGAATGTGGATTTCTTGGTGGAAATGATCA-GAAACAACTCC 1149
|||||||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1088 TCTTTGCAGTAAGGTATGGGAATGTGGATTTCTTGGTGGAGATGATCAAGAA-CAACTCC 1146
Query 1150 GAGCTTCTATGGTCCACGAGAACAAGCTCGAGCAGTACTCTGTTTCTCTTGGCCGTCGAG 1209
||||||||||||||||||| ||| |||| ||| || ||||||||||||||||||||||||
Sbjct 1147 GAGCTTCTATGGTCCACGAAAACGAGCTTGAGTAGAACTCTGTTTCTCTTGGCCGTCGAG 1206
Query 1210 TTCAGACAAGAGAAGGTGTTTAGTCTCCTATACGGTCTGGACGACAGAAAGTACTTGTTG 1269
|| |||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct 1207 TTGAGACAAGAAAAAGTGTTTAGTCTACTCTACGGTCTGGACGATAGGAAGTACTTGTTG 1266
Query 1270 CTCGCAGACAAGG-ACTGTGATGGAAATGGTGTGCTTCATCTCGCTGGCTTTCCGTCTCC 1328
|| | || |||| |||||||||| |||||| ||||||||||||| |||| || |||||
Sbjct 1267 CTTGTGGA-AAGGGACTGTGATGGCAATGGTATGCTTCATCTCGCCGGCTATCTTTCTCC 1325
Query 1329 TCCTTCCAAGCTCTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGCGAGTTACAATG 1388
||||| ||||||||||| || ||||||| ||||| || ||||||| |||||||||||
Sbjct 1326 TCCTTGCAAGCTCTCTACCGTTACTGGCGCAGCTTTGAAGATGCAACGTGAGTTACAATG 1385
Query 1389 GTTCAAGGAAGTGGAGAGAATCGCACCGGAGATCGAGAAGGAGAGAGTAAACACA-GAAG 1447
||||||||||||||||| ||| | ||| |||||||||||| |||||||||||||| | |
Sbjct 1386 GTTCAAGGAAGTGGAGAAAATTGTACCAGAGATCGAGAAGCAGAGAGTAAACACAAGTGG 1445
Query 1448 AGCAAACACCGATCGAGATATTCACAAAGGAGCACCAAGGACTGCGACAAGAAGCAGAGA 1507
| |||||||| ||||||||||||||||||||||||||| | |||| |||||||| ||||
Sbjct 1446 A-CAAACACCAATCGAGATATTCACAAAGGAGCACCAAACATTGCGGCAAGAAGCTGAGA 1504
Query 1508 AATGGATGAAAGACACGGCTATGTCATGCAGCTTAGTCGCGGCACTCATCGTCACGGTCA 1567
|||| |||||| ||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct 1505 AATGTATGAAATACACGGCGATGTCGTGCAGCTTAGTCGCGACTCTCATATTCACGGTCA 1564
Query 1568 CCTTTGCGGCGGTCTTCACTGTCCCTGGTGGCACAGACGACAATTCAAAAGGTAAACCCT 1627
|||| ||||| |||||||| ||||| || | | |||| ||| | || |||||||
Sbjct 1565 CCTTCGCGGCCGTCTTCACCGTCCC------CA-A--CTACAACTCACACGGCAAACCCT 1615
Query 1628 TTCACCTACGTGATCG-GCGATTCATCATATTCATCGTCTCAGATTTGATCTCCTGCTTC 1686
|||||||||||||||| || |||| || |||| ||||||| ||| ||||||||||||||
Sbjct 1616 TTCACCTACGTGATCGTGCT-TTCACCACATTCGTCGTCTCCGATCTGATCTCCTGCTTC 1674
Query 1687 GCCTCTTGCACCTCCGTCCTCATCTTCCTCGGGATACTA-ACCGCAAGATACTCCTTCGA 1745
|| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||
Sbjct 1675 GCAGCTTGCACCTCCGTCCTCATTTTCCTCGGGATAC-ACACCGCAAGGTACTCCTTCGA 1733
Query 1746 CGATTTCTTGGTCTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACTGTTCGTTTC 1805
||||||||| ||| || ||| |||||||||| |||||||| || ||||||||||||||
Sbjct 1734 TGATTTCTTGTTCTCGCTACCGGCAAAGATGATCGCCGGACTCTCCATACTGTTCGTTTC 1793
Query 1806 AATAGCGGCGATGCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGGTAAAGAAGG 1865
||| | ||| |||||||| || ||||||||||| |||||||||||||||| |||||| |
Sbjct 1794 AATCGGGGCAATGCTTATTGCCTTCTCGTCGGCCCTATTCACGATGATGGATAAAGA-G- 1851
Query 1866 GAAATGGATTGTTGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTTGTTTGTTCT 1925
|||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1852 -AAATGGATCGTTGCTCCGACGATCCTTCTCGCTTGTTTACCGGCGCTGCTGTTTGTTCT 1910
Query 1926 GCTTCAGTATCCTCTCCTCAAGGAAATGATCTTCTCCACTTATGGAAAAGGGATCTTTGA 1985
||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||| ||
Sbjct 1911 GCTTCAGTATCCTCTCCTCAAAGAAATGATCTTTTCGACTTACGGTAAAGGAATCTTCGA 1970
Query 1986 CAG 1988
|||
Sbjct 1971 CAG 1973
Score = 366 bits (198), Expect = 3e-100
Identities = 396/492 (80%), Gaps = 12/492 (2%)
Strand=Plus/Plus
Query 229 GTATATTATGAGTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTGTAGAAATCGTG 288
||||| ||||| ||||| ||||||||| |||||||||||||||| |||||||| | |||
Sbjct 175 GTATACTATGATTATATGCAATTAAGTAAAGGAATAAGCCAAGGGAGTGTAGAAGTTGTG 234
Query 289 AAGGACT-TCTTGAATCATCATCCGGACTCAGTGGACGAATGGATAAACCTTTACGAGAC 347
|| || | ||||||| | || |||| | | ||||||||||||||||||| ||| |||||
Sbjct 235 AAAGA-TGTCTTGAACCGTCGGCCGGGCGCTGTGGACGAATGGATAAACCCTTATGAGAC 293
Query 348 GCCATTGTTAAAGGCTTGTGCGTGTGGGAAACCCGAGATTGTTAAAGAGCTTCTACGTCG 407
|||||||| |||||||| || ||||| |||||||||||||||||||||||||| |||||
Sbjct 294 ACCATTGTTGAAGGCTTGCGCATGTGGAAAACCCGAGATTGTTAAAGAGCTTCTTCGTCG 353
Query 408 TATGACACCTGAACAAATGCTTCCCAAGATGAGCCAAAACGCTTCATACCACACGCCTCT 467
|||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 354 CATGAAACCTGAACAAATGCTTCCCAAGATGAGCCGTCACACTTCATACCACACACCTCT 413
Query 468 CACTGTTGTTGCGGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAG-TCGCCAAGAACC 526
||||||||| || || | |||||||||||||| || || ||| | | | |||||||
Sbjct 414 CACTGTTGTCGCAGTCACCGGAAACATGGAGATCGCCAAATACTT-GCTTGACAAGAACT 472
Query 527 CTAAGCTGCTAGAGATTCCTGGA-ATCAATGGACAAATTCCGGTTGTGGTTGCGGTTGAG 585
| ||||||| |||| || | | || |||||||| |||||| |||||||| |||||
Sbjct 473 TTGGGCTGCTAAAGATGCCAG-ACATAAATGGACAGCTTCCGGCCGTGGTTGCAATTGAG 531
Query 586 AATACACAGATGGAGATGGCTCGCTATCTTT-ACAC-CAGAACTCCG-GTTCAAGTGTTA 642
|| || | ||||||||| | || |||| || || |||| | || | |||||
Sbjct 532 AACGGGCATAAAGAGATGGCTTGGTA-CTTTTACGTGCA-AACTATGCGTCCTC-TGTTA 588
Query 643 CTTGACCAAGATGGGTATCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAATG 702
||||| ||||||||||| |||||| | |||||| || |||| ||||||| ||| ||||||
Sbjct 589 CTTGATCAAGATGGGTACCACGGTACCTTGCTCATTATCAACGCCATCTACTACAAAATG 648
Query 703 CTTGACATCGCG 714
||||||| |||
Sbjct 649 ATTGACATTGCG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5