BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04700.1 Length=2010 Score E Sequences producing significant alignments: (Bits) Value Ahg325107 jgi|Araly1|325107|fgenesh1_pm.C_scaffold_6000327 3314 0.0 Ahg892386 jgi|Araly1|892386|Al_scaffold_0006_382 1594 0.0 Ahg892382 jgi|Araly1|892382|Al_scaffold_0006_378 1245 0.0 > Ahg325107 jgi|Araly1|325107|fgenesh1_pm.C_scaffold_6000327 Length=2010 Score = 3314 bits (1794), Expect = 0.0 Identities = 1942/2014 (96%), Gaps = 8/2014 (0%) Strand=Plus/Plus Query 1 ATGGCAATGAGTTCTAATTACTTA-GACGCAACTTTGAAGGAAACATTTCGGAGGAGCCC 59 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAATGAGTTCTAATTACTTATG-CGCAACTTTGAAGGAAACATTTCGGAGGAGCCC 59 Query 60 TTTCAAATTCGCTAATACAAAGGTTCCTCATGCTGGTCTAGGCGACAGTGTCTCTCCTAT 119 |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 60 TTTCAAATTCGCTAATACAAAGGTTCCTCATGCTGGCCTAGGCGACAGTATTTCTCCTAT 119 Query 120 AAAAGAAGTTCCTGAAGAAGAAGAAGTTCCAAATGACCCCGTCAATATCCAGATTCCATT 179 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 120 AAAAGAAGTTCCTGAAGAAGAAGAAGTTCCAAATGATCCCGTCAATATCCAGATTCCGTT 179 Query 180 CATCGAATCAGCTCTTTCCACATCTCGGCTTCGCGGAAAGAATACGAACGTATATTATGA 239 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 180 CATCGAATCAGCTCTTTCCGCATCTCGGCTCCGCGGAAAGAATACGAACGTATATTATGA 239 Query 240 GTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTGTAGAAATCGTGAAGGACTTCTT 299 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 240 GTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTTTAGAAGTCGTGAAGGACTTCTT 299 Query 300 GAATCATCATCCGGACTCAGTGGACGAATGGATAAACCTTTACGAGACGCCATTGTTAAA 359 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 300 GAACCATCATCCGGACTCAGTGGACGAATGGATAAACCTTTATGAGACGCCATTGTTAAA 359 Query 360 GGCTTGTGCGTGTGGGAAACCCGAGATTGTTAAAGAGCTTCTACGTCGTATGACACCTGA 419 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GGCTTGCGCGTGTGGGAAACCCGAGATTGTTAAAGAGCTTCTACGTCGTATGACACCTGA 419 Query 420 ACAAATGCTTCCCAAGATGAGCCAAAACGCTTCATACCACACGCCTCTCACTGTTGTTGC 479 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 ACAAATGCTTCCCAAGATGAGCCAAAACGCTTCCTACCACACGCCTCTCACTGTTGTTGC 479 Query 480 GGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAGTCGCCAAGAACCCTAAGCTGCTAGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAGTCGCCAAGAACCCTAAGCTGCTAGA 539 Query 540 GATTCCTGGAATCAATGGACAAATTCCGGTTGTGGTTGCGGTTGAGAATACACAGATGGA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GATTCCTGGAATCAATGGACAAATTCCGGTTGTGGTTGCGGTTGAGAATACACAGATGGA 599 Query 600 GATGGCTCGCTATCTTTACACCAGAACTCCGGTTCAAGTGTTACTTGACCAAGATGGGTA 659 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 600 GATGGCTCGCTATCTTTACTCCAGAACTCCGGTTCAAGTGTTACTTGACCAAGATGGGTA 659 Query 660 TCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAATGCTTGACATCGCGTTGGA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAATGCTTGACATCGCGTTGGA 719 Query 720 TCTGTTCAACATGAGCAGACGCTTAGCCGTCACAAAACACTCGCAAATCGAGTCGATACC 779 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 720 TCTGTTCAACATGAGCAGACGCTTAGCCGTCACAAAACACTTGCAAATCGAGTCGATTCC 779 Query 780 CATCATTGTCTTGGCTTCAAAGCCAGATCTTTTTCCTGGTGGCTGCTATCTTGGACCATT 839 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 780 CATCATTGTCTTGGCTTCAAAGCCAGATCTTTTTCCTGGTGGCTGCTATCACGGACCATT 839 Query 840 GACACGTTTCATCTACTCTTGGATACAAGTAAAGCTGCCAACTCTTCCACAGCCTTCTCG 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GACACGTTTCATCTACTCTTGGATACAAGTAAAGCTGCCAACTCTTCCACAGCCTTCTCG 899 Query 900 TTCAAACAGAGATCAGCAGAATACTCTGATGAGGAAACTGCTCAAAGGCCTCTCCAAATG 959 || |||||||||||| ||||||||||||||| ||| |||| | ||||||||||||||||| Sbjct 900 TTTAAACAGAGATCATCAGAATACTCTGATGGGGAGACTGTTGAAAGGCCTCTCCAAATG 959 Query 960 GACTGGAATAGATGAAGTGTACCGACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCT 1019 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GACCGGAATAGATGAAGTGTACCGACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCT 1019 Query 1020 ACTG-GGAATATCAGAAGAAACATTGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGG 1078 || | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1020 AC-GAGGAATATCAGAAGAAACACTGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGG 1078 Query 1079 ATGAGGCTTTACTCTTTGCAGTGAGATATGGGAATGTGGATTTCTTGGTGGAAATGATCA 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1079 ATGAGGCTTTACTCTTTGCAGTGAGATATGGGAATGTGGATTTCTTGGTGGAGATGATCA 1138 Query 1139 -GAAACAACTCCGAGCTTCTATGGTCCACGAGAACAAGCTCGAGCAGTACTCTGTTTCTC 1197 ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1139 AGAA-CAACTCTGAGCTTCTATGGTCCACGAGAACAAGCTCAAGCAGTACTCTGTTTCTC 1197 Query 1198 TTGGCCGTCGAGTTCAGACAAGAGAAGGTGTTTAGTCTCCTATACGGTCTGGACGACAGA 1257 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1198 TTGGCGGTCGAGTTCAGACAAGAGAAGGTGTTTAGTCTCCTCTACGGTCTGGACGACAGG 1257 Query 1258 AAGTACTTGTTGCTCGCAGACAAGGACTGTGATGGAAATGGTGTGCTTCATCTCGCTGGC 1317 ||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||| Sbjct 1258 AAGTACTTGTTACTCGCCGACAAGGACTGTGACGGCAATGGTGTGCTTCATCTCGCCGGC 1317 Query 1318 TTTCCGTCTCCTCCTTCCAAGCTCTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGC 1377 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 TTTCCTTCTCCTCCTTCCAAGCTCTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGG 1377 Query 1378 GAGTTACAATGGTTCAAGGAAGTGGAGAGAATCGCACCGGAGATCGAGAAGGAGAGAGTA 1437 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1378 GAGTTACAATGGTTCAAGGAAGTGGAGAGAATCGCACCGGAGATTGAGAAGGAAAGAGTA 1437 Query 1438 AACACAGAAGAGCAAACACCGATCGAGATATTCACAAAGGAGCACCAAGGACTGCGACAA 1497 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1438 AACACAGAAGAGCAAACACCGATCGAGATATTCACAAAGGAACACCAAGGACTGCGACAA 1497 Query 1498 GAAGCAGAGAAATGGATGAAAGACACGGCTATGTCATGCAGCTTAGTCGCGGCACTCATC 1557 ||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1498 GAAGCCGAGAAATGGATGAAAGACACGGCCATGTCATGCAGCTTAGTCGCAGCTCTCATT 1557 Query 1558 GTCACGGTCACCTTTGCGGCGGTCTTCACTGTCCCTGGTGGCACAGACGACAATTCAAAA 1617 || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1558 GTTACGGTCACCTTTGCGGCGGTCTTCACCGTCCCTGGTGGCACTGACGACAATTCAAAA 1617 Query 1618 GGTAAACCCTTTCACCTACG-TGATCGGCGATTCATCATATTCATCGTCTCAGATTTGAT 1676 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1618 GGTAAACCCTTTCACCTA-GATGATCGGCGATTCATCATATTCATCGTCTCAGATTTGAT 1676 Query 1677 CTCCTGCTTCGCCTCTTGCACCTCCGTCCTCATCTTCCTCGGGATACTAACCGCAAGATA 1736 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1677 CTCTTGCTTCGCCTCTTGCACCTCCGTCCTCATCTTCCTCGGGATTCTAACCGCAAGATA 1736 Query 1737 CTCCTTCGACGATTTCTTGGTCTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACT 1796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1737 CTCCTTCGACGATTTCTTGGTCTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACT 1796 Query 1797 GTTCGTTTCAATAGCGGCGATGCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGG 1856 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1797 GTTCGTTTCAATTGCGGCGATGCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGG 1856 Query 1857 TAAAGAAGGGAAATGGATTGTTGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTT 1916 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 TAAAGAAGGGAAATGGATCGTTGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTT 1916 Query 1917 GTTTGTTCTGCTTCAGTATCCTCTCCTCAAGGAAATGATCTTCTCCACTTATGGAAAAGG 1976 ||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct 1917 GTTTGTTCTACTTCAGTATCCTCTCCTCAAGGAAATGATCTTTTCAACTTACGGCAAAGG 1976 Query 1977 GATCTTTGACAGAAACATGAAATGTTGGGCCTAA 2010 ||||| ||||||| |||||||||||||| ||| Sbjct 1977 AATCTTCAACAGAAATATGAAATGTTGGGCTTAA 2010 > Ahg892386 jgi|Araly1|892386|Al_scaffold_0006_382 Length=1950 Score = 1594 bits (863), Expect = 0.0 Identities = 1505/1808 (83%), Gaps = 71/1808 (4%) Strand=Plus/Plus Query 229 GTATATTATGAGTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTGTAGA-AATCGT 287 ||||| ||||| ||||| ||||||||| |||||||||||||||| |||||| || || Sbjct 175 GTATACTATGATTATATGCAATTAAGTAAAGGAATAAGCCAAGGGAATGTAGAGGAT-GT 233 Query 288 GAAGGACTTCTTGAATCATCA-TCC-GGACTCAGTGGACGAATGGATAAACCTTTACGAG 345 ||| || |||||||| | | ||| || | ||||||||||||||||||||| ||||||| Sbjct 234 GAAAGATTTCTTGAA-CCGAAGTCCAGG-CGCAGTGGACGAATGGATAAACCCTTACGAG 291 Query 346 ACGCCATTGTT-AAAGGCTTGTGCGTGTGGGAA-ACCCGAGATTGTTAAAGAGCTTCTAC 403 || ||| |||| ||| ||||| || | | |||| ||||||||||||||||| |||||| | Sbjct 292 ACACCACTGTTGAAA-GCTTGCGCATAT-GGAAGACCCGAGATTGTTAAAGTGCTTCTTC 349 Query 404 GTCGTATGACACCTGAACAAATGCTTCCCAAGATGAGCCAAAACGCTTCATACCACACGC 463 |||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||| | Sbjct 350 GTCGCATGAAACCTGAACAAATGCTTCCCAAGATGAGCCATAACACTTCATACCACACAC 409 Query 464 CTCTCACTGTTGTTGCGGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAG-TCGCCAAG 522 ||||||||||||| || || | ||||||||||||||||| || ||| | | | |||| Sbjct 410 CTCTCACTGTTGTAGCAGTCACCGGAAACATGGAGATTGCCAAATACTT-GCTTGGCAAG 468 Query 523 AACCCTAAGCTGCTAGAGATTCCTGGAATCAATGGACAAATTCCGGTTGTGGTTGCGGTT 582 ||| | ||||||| |||| || || || |||||||| |||| | |||||||| || Sbjct 469 AACTTTGGGCTGCTAAAGATGCCGGGCATGAATGGACAGCTTCCAGCCGTGGTTGCAATT 528 Query 583 GAGAATACACAGATGGAGATGGCTCGCTATC-TTTACACCAGAACTCCG-GTTCAAGTGT 640 ||||| || | ||||||||||| || | |||||| | |||| | |||| ||| Sbjct 529 GAGAACGGGCATAAAGAGATGGCTCGGTA-CTTTTACATGAAAACTATGCGTTC-TCTGT 586 Query 641 TACTTGACCAAGATGGGTATCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAA 700 ||||||| | |||||||| |||||| | |||||| || |||| ||||||| ||| |||| Sbjct 587 TACTTGATGAGGATGGGTACCACGGTACCTTGCTCATTATCAACGCCATCTACTACAAAA 646 Query 701 TGCTTGACATCGCGTTG-G--ATC--TGTTCAACATGAGCA-G--ACGCTTAGCCGTCAC 752 || | ||||| |||||| | || || ||| | || || | || ||| |||||||| Sbjct 647 TGATCGACATTGCGTTGTGTTTTCTTTGCGCAA-A-GA-CACGCTAC-CTT-GCCGTCAC 701 Query 753 AAAACACTCGCAAATCGAGTCGA-TACCCATCATTGTCTTGGCTTCAAAGCCAGATCTTT 811 |||||||| ||| || ||||||| | |||||||| || || |||||||| || || |||| Sbjct 702 AAAACACTTGCAGATAGAGTCGACT-CCCATCATCGTTTTAGCTTCAAAACCGGACCTTT 760 Query 812 TTCCTGGTGGCTGCTATCTTGGACCATT-GACACG-TTTCATCTACTCTTGGATACAAGT 869 |||| | |||||| ||| |||||||| || ||| || || ||| ||| |||||||| Sbjct 761 TTCCCAGCGGCTGCCGTCTCGGACCATTGGA-ACGCATT-ATATACGATTGTATACAAGT 818 Query 870 AAAGCTGCCA-ACTCTTCCACAGCCTT-CTCGT-T-C-AAACAGAGATCAGCAGAA-TAC 923 |||||| || || | | ||| || | | | | ||| | ||||||||| || ||| Sbjct 819 AAAGCT-TCAGGCTAAT-C-CAG-GTTGGTTTTATCCGAAA-AAAGATCAGCA-AACTAC 872 Query 924 TCTGATGAGGAAACTGCTCAAAG-GCCTCTCCAAATGGACTGGAATAGATGAAGTGTACC 982 ||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||| Sbjct 873 CCTGATGAGGAAGCTGCT-TAAGTGTCTCTCCAAATGGACTGGAATAGATGAAGTGTACC 931 Query 983 GACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCTACTGGGAATATCAGAAGAAACAT 1042 ||| ||||| |||||||||||||||||||||||| || ||| |||||||||||||||| Sbjct 932 AACTGAAGGTTATGCATCTACAAGCCAAGAAGCTTTTATTGGTAATATCAGAAGAAACAC 991 Query 1043 TGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGGATGAGGCTTTACTCTTTGCAGTGA 1102 |||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 992 GGGCCATGGGATTAAAGGAACGTTCCGAGACAGTGGGTGAGGCCTTACTCTTTGCAGTGA 1051 Query 1103 GATATGGGAATGTGGATTTCTTGGTGGAAATGATCA-GAAACAACTCCGAGCTTCTATGG 1161 | |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 1052 GGTATGGGAATGTGGATTTCTTGGTGGAGATGATCAAGAA-CAACTCCGAGCTTCTATGG 1110 Query 1162 TCCACGAGAACAAGCTCGAGCAGTACTCTGTTTCTCTTGGCCGTCGAGTTCAGACAAGAG 1221 ||||||| ||| |||| ||| || |||||||||||||||||||||||||| |||||||| Sbjct 1111 TCCACGAAAACGAGCTTGAGTAGAACTCTGTTTCTCTTGGCCGTCGAGTTGAGACAAGAA 1170 Query 1222 AAGGTGTTTAGTCTCCTATACGGTCTGGACGACAGAAAGTACTTGTTGCTCGCAGACAAG 1281 || ||||||||||| || |||||||||||||| || |||||||||||||| || || ||| Sbjct 1171 AAAGTGTTTAGTCTACTCTACGGTCTGGACGATAGGAAGTACTTGTTGCTTGCGGA-AAG 1229 Query 1282 G-ACTGTGATGGAAATGGTGTGCTTCATCTCGCTGGCTTTCCGTCTCCTCCTTCCAAGCT 1340 | |||||||||| |||||| ||||||||||||| |||| || |||||||||| |||||| Sbjct 1230 GGACTGTGATGGCAATGGTATGCTTCATCTCGCCGGCTATCTTTCTCCTCCTTGCAAGCT 1289 Query 1341 CTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGCGAGTTACAATGGTTCAAGGAAGT 1400 ||||| || ||||||| ||||| || ||||||| ||||||||||||||||||||||| Sbjct 1290 CTCTACCGTTACTGGCGCAGCTTTGAAGATGCAACGTGAGTTACAATGGTTCAAGGAAGT 1349 Query 1401 GGAGAGAATCGCACCGGAGATCGAGAAGGAGAGAGTAAACACA-GAAGAGCAAACACCGA 1459 ||||| ||| | ||| ||||| |||||| |||||||||||||| | || |||||||| | Sbjct 1350 GGAGAAAATTGTACCAGAGATGGAGAAGCAGAGAGTAAACACAAGTGGA-CAAACACCAA 1408 Query 1460 TCGAGATATTCACAAAGGAGCACCAAGGACTGCGACAAGAAGCAGAGAAATGGATGAAAG 1519 |||||||||||||||||||||||||| | |||| |||||||| |||||||| |||||| Sbjct 1409 TCGAGATATTCACAAAGGAGCACCAAACATTGCGGCAAGAAGCTGAGAAATGTATGAAAT 1468 Query 1520 ACACGGCTATGTCATGCAGCTTAGTCGCGGCACTCATCGTCACGGTCACCTTTGCGGCGG 1579 ||||||| ||||| ||||||||||||||| | ||||| ||||||||||||| ||||| | Sbjct 1469 ACACGGCGATGTCGTGCAGCTTAGTCGCGACTCTCATATTCACGGTCACCTTCGCGGCCG 1528 Query 1580 TCTTCACTGTCCCTGGTGGCACAGACGACAATTCAAAAGGTAAACCCTTTCACCTACGTG 1639 ||||||| ||||| || | | |||| ||| | || ||||||||||||||||||| Sbjct 1529 TCTTCACCGTCCC------CA-A--CTACAACTCACACGGCAAACCCTTTCACCTACGTG 1579 Query 1640 ATCG-GCGATTCATCATATTCATCGTCTCAGATTTGATCTCCTGCTTCGCCTCTTGCACC 1698 |||| || |||| || |||| ||||||| ||| |||||||||||||||| |||||||| Sbjct 1580 ATCGTGCT-TTCACCACATTCGTCGTCTCCGATCTGATCTCCTGCTTCGCAGCTTGCACC 1638 Query 1699 TCCGTCCTCATCTTCCTCGGGATACTA-ACCGCAAGATACTCCTTCGACGATTTCTTGGT 1757 ||||||||||| ||||||||||||| | |||||||| ||||||||||| ||||||||| | Sbjct 1639 TCCGTCCTCATTTTCCTCGGGATAC-ACACCGCAAGGTACTCCTTCGATGATTTCTTGTT 1697 Query 1758 CTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACTGTTCGTTTCAATAGCGGCGAT 1817 || || ||| |||||||||| |||||||| || ||||||||||||||||| | ||| || Sbjct 1698 CTCGCTACCGGCAAAGATGATCGCCGGACTCTCCATACTGTTCGTTTCAATCGGGGCAAT 1757 Query 1818 GCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGGTAAAGAAGGGAAATGGATTGT 1877 |||||| || ||||||||||| |||||||||||||||| |||||| | |||||||| || Sbjct 1758 GCTTATTGCCTTCTCGTCGGCCCTATTCACGATGATGGATAAAGA-G--AAATGGATCGT 1814 Query 1878 TGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTTGTTTGTTCTGCTTCAGTATCC 1937 |||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| Sbjct 1815 TGCTCCGACGATCCTTCTCGCTTGTTTACCGGCGCTGCTGTTTGTTCTGCTTCAGTATCC 1874 Query 1938 TCTCCTCAAGGAAATGATCTTCTCCACTTATGGAAAAGGGATCTTTGACAGAAACATGAA 1997 ||||||||| ||||||||||| || ||||| || ||||| ||||| | |||||||||||| Sbjct 1875 TCTCCTCAAAGAAATGATCTTTTCGACTTACGGCAAAGGAATCTTCGGCAGAAACATGAA 1934 Query 1998 ATGTTGGG 2005 |||||||| Sbjct 1935 ATGTTGGG 1942 > Ahg892382 jgi|Araly1|892382|Al_scaffold_0006_378 Length=1980 Score = 1245 bits (674), Expect = 0.0 Identities = 1074/1263 (85%), Gaps = 43/1263 (3%) Strand=Plus/Plus Query 741 CTTAGCCGTCACAAAACACTCGCAAATCGAGTCGA-TACCCATCATTGTCTTGGCTTCAA 799 ||| |||||||||||||||| ||| || ||||||| | |||||||| || || ||||||| Sbjct 739 CTT-GCCGTCACAAAACACTTGCAGATAGAGTCGACT-CCCATCATCGTTTTAGCTTCAA 796 Query 800 AGCCAGATCTTTTTCCTGGTGGCTGCTATCTTGGACCATT-GACACG-TTTCATCTACTC 857 | || || |||||||| | |||||| ||| |||||||| || ||| || || ||| Sbjct 797 AACCGGACCTTTTTCCCAGCGGCTGCCGTCTCGGACCATTGGA-ACGCATT-ATATACGA 854 Query 858 TTGGATACAAGTAAAGCTGCCA-ACTCTTCCACAGCCTT-CTCGT-T-C-AAACAGAGAT 912 ||| |||||||||||||| || || | | ||| || | | | | ||| | |||| Sbjct 855 TTGTATACAAGTAAAGCT-TCAGGCTAAT-C-CAG-GTTGGTTTTATCCGAAA-AAAGAT 909 Query 913 CAGCAGAA-TACTCTGATGAGGAAACTGCTCAAAG-GCCTCTCCAAATGGACTGGAATAG 970 ||||| || ||| ||||||||||| ||||| ||| | |||||||||||||||||||||| Sbjct 910 CAGCA-AACTACCCTGATGAGGAAGCTGCT-TAAGTGTCTCTCCAAATGGACTGGAATAG 967 Query 971 ATGAAGTGTACCGACTTAAGGTCATGCATCTACAAGCCAAGAAGCTTCTACTGGGAATAT 1030 |||||||||||| ||| ||||| |||||||||||||||||||||||| || ||| ||||| Sbjct 968 ATGAAGTGTACCAACTGAAGGTTATGCATCTACAAGCCAAGAAGCTTTTATTGGTAATAT 1027 Query 1031 CAGAAGAAACATTGGCCTTGGGCTTGAAGGAACGTTCCGAGACAGTGGATGAGGCTTTAC 1090 ||||||||||| |||| |||| || |||||||||||||||||||||| |||||| |||| Sbjct 1028 CAGAAGAAACACGGGCCATGGGATTAAAGGAACGTTCCGAGACAGTGGGTGAGGCCTTAC 1087 Query 1091 TCTTTGCAGTGAGATATGGGAATGTGGATTTCTTGGTGGAAATGATCA-GAAACAACTCC 1149 |||||||||| || |||||||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 1088 TCTTTGCAGTAAGGTATGGGAATGTGGATTTCTTGGTGGAGATGATCAAGAA-CAACTCC 1146 Query 1150 GAGCTTCTATGGTCCACGAGAACAAGCTCGAGCAGTACTCTGTTTCTCTTGGCCGTCGAG 1209 ||||||||||||||||||| ||| |||| ||| || |||||||||||||||||||||||| Sbjct 1147 GAGCTTCTATGGTCCACGAAAACGAGCTTGAGTAGAACTCTGTTTCTCTTGGCCGTCGAG 1206 Query 1210 TTCAGACAAGAGAAGGTGTTTAGTCTCCTATACGGTCTGGACGACAGAAAGTACTTGTTG 1269 || |||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct 1207 TTGAGACAAGAAAAAGTGTTTAGTCTACTCTACGGTCTGGACGATAGGAAGTACTTGTTG 1266 Query 1270 CTCGCAGACAAGG-ACTGTGATGGAAATGGTGTGCTTCATCTCGCTGGCTTTCCGTCTCC 1328 || | || |||| |||||||||| |||||| ||||||||||||| |||| || ||||| Sbjct 1267 CTTGTGGA-AAGGGACTGTGATGGCAATGGTATGCTTCATCTCGCCGGCTATCTTTCTCC 1325 Query 1329 TCCTTCCAAGCTCTCTAGTGTCGTTGGCGCACCTTTGCAGTTGCAACGCGAGTTACAATG 1388 ||||| ||||||||||| || ||||||| ||||| || ||||||| ||||||||||| Sbjct 1326 TCCTTGCAAGCTCTCTACCGTTACTGGCGCAGCTTTGAAGATGCAACGTGAGTTACAATG 1385 Query 1389 GTTCAAGGAAGTGGAGAGAATCGCACCGGAGATCGAGAAGGAGAGAGTAAACACA-GAAG 1447 ||||||||||||||||| ||| | ||| |||||||||||| |||||||||||||| | | Sbjct 1386 GTTCAAGGAAGTGGAGAAAATTGTACCAGAGATCGAGAAGCAGAGAGTAAACACAAGTGG 1445 Query 1448 AGCAAACACCGATCGAGATATTCACAAAGGAGCACCAAGGACTGCGACAAGAAGCAGAGA 1507 | |||||||| ||||||||||||||||||||||||||| | |||| |||||||| |||| Sbjct 1446 A-CAAACACCAATCGAGATATTCACAAAGGAGCACCAAACATTGCGGCAAGAAGCTGAGA 1504 Query 1508 AATGGATGAAAGACACGGCTATGTCATGCAGCTTAGTCGCGGCACTCATCGTCACGGTCA 1567 |||| |||||| ||||||| ||||| ||||||||||||||| | ||||| ||||||||| Sbjct 1505 AATGTATGAAATACACGGCGATGTCGTGCAGCTTAGTCGCGACTCTCATATTCACGGTCA 1564 Query 1568 CCTTTGCGGCGGTCTTCACTGTCCCTGGTGGCACAGACGACAATTCAAAAGGTAAACCCT 1627 |||| ||||| |||||||| ||||| || | | |||| ||| | || ||||||| Sbjct 1565 CCTTCGCGGCCGTCTTCACCGTCCC------CA-A--CTACAACTCACACGGCAAACCCT 1615 Query 1628 TTCACCTACGTGATCG-GCGATTCATCATATTCATCGTCTCAGATTTGATCTCCTGCTTC 1686 |||||||||||||||| || |||| || |||| ||||||| ||| |||||||||||||| Sbjct 1616 TTCACCTACGTGATCGTGCT-TTCACCACATTCGTCGTCTCCGATCTGATCTCCTGCTTC 1674 Query 1687 GCCTCTTGCACCTCCGTCCTCATCTTCCTCGGGATACTA-ACCGCAAGATACTCCTTCGA 1745 || ||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| Sbjct 1675 GCAGCTTGCACCTCCGTCCTCATTTTCCTCGGGATAC-ACACCGCAAGGTACTCCTTCGA 1733 Query 1746 CGATTTCTTGGTCTTTCTGCCGACAAAGATGATTGCCGGACTTTCGATACTGTTCGTTTC 1805 ||||||||| ||| || ||| |||||||||| |||||||| || |||||||||||||| Sbjct 1734 TGATTTCTTGTTCTCGCTACCGGCAAAGATGATCGCCGGACTCTCCATACTGTTCGTTTC 1793 Query 1806 AATAGCGGCGATGCTTATAGCATTCTCGTCGGCGCTATTCACGATGATGGGTAAAGAAGG 1865 ||| | ||| |||||||| || ||||||||||| |||||||||||||||| |||||| | Sbjct 1794 AATCGGGGCAATGCTTATTGCCTTCTCGTCGGCCCTATTCACGATGATGGATAAAGA-G- 1851 Query 1866 GAAATGGATTGTTGCTCCGACGATCCTTTTTGCTTGTTTACCGGCGCTGTTGTTTGTTCT 1925 |||||||| |||||||||||||||||| | |||||||||||||||||| |||||||||| Sbjct 1852 -AAATGGATCGTTGCTCCGACGATCCTTCTCGCTTGTTTACCGGCGCTGCTGTTTGTTCT 1910 Query 1926 GCTTCAGTATCCTCTCCTCAAGGAAATGATCTTCTCCACTTATGGAAAAGGGATCTTTGA 1985 ||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||| || Sbjct 1911 GCTTCAGTATCCTCTCCTCAAAGAAATGATCTTTTCGACTTACGGTAAAGGAATCTTCGA 1970 Query 1986 CAG 1988 ||| Sbjct 1971 CAG 1973 Score = 366 bits (198), Expect = 3e-100 Identities = 396/492 (80%), Gaps = 12/492 (2%) Strand=Plus/Plus Query 229 GTATATTATGAGTATATACAATTAAGTCAAGGAATAAGCCAAGGTCGTGTAGAAATCGTG 288 ||||| ||||| ||||| ||||||||| |||||||||||||||| |||||||| | ||| Sbjct 175 GTATACTATGATTATATGCAATTAAGTAAAGGAATAAGCCAAGGGAGTGTAGAAGTTGTG 234 Query 289 AAGGACT-TCTTGAATCATCATCCGGACTCAGTGGACGAATGGATAAACCTTTACGAGAC 347 || || | ||||||| | || |||| | | ||||||||||||||||||| ||| ||||| Sbjct 235 AAAGA-TGTCTTGAACCGTCGGCCGGGCGCTGTGGACGAATGGATAAACCCTTATGAGAC 293 Query 348 GCCATTGTTAAAGGCTTGTGCGTGTGGGAAACCCGAGATTGTTAAAGAGCTTCTACGTCG 407 |||||||| |||||||| || ||||| |||||||||||||||||||||||||| ||||| Sbjct 294 ACCATTGTTGAAGGCTTGCGCATGTGGAAAACCCGAGATTGTTAAAGAGCTTCTTCGTCG 353 Query 408 TATGACACCTGAACAAATGCTTCCCAAGATGAGCCAAAACGCTTCATACCACACGCCTCT 467 |||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||| Sbjct 354 CATGAAACCTGAACAAATGCTTCCCAAGATGAGCCGTCACACTTCATACCACACACCTCT 413 Query 468 CACTGTTGTTGCGGTTAGTGGAAACATGGAGATTGCTGAAGCCTTAG-TCGCCAAGAACC 526 ||||||||| || || | |||||||||||||| || || ||| | | | ||||||| Sbjct 414 CACTGTTGTCGCAGTCACCGGAAACATGGAGATCGCCAAATACTT-GCTTGACAAGAACT 472 Query 527 CTAAGCTGCTAGAGATTCCTGGA-ATCAATGGACAAATTCCGGTTGTGGTTGCGGTTGAG 585 | ||||||| |||| || | | || |||||||| |||||| |||||||| ||||| Sbjct 473 TTGGGCTGCTAAAGATGCCAG-ACATAAATGGACAGCTTCCGGCCGTGGTTGCAATTGAG 531 Query 586 AATACACAGATGGAGATGGCTCGCTATCTTT-ACAC-CAGAACTCCG-GTTCAAGTGTTA 642 || || | ||||||||| | || |||| || || |||| | || | ||||| Sbjct 532 AACGGGCATAAAGAGATGGCTTGGTA-CTTTTACGTGCA-AACTATGCGTCCTC-TGTTA 588 Query 643 CTTGACCAAGATGGGTATCACGGTTCTTTGCTCTTTCTCAATGCCATCTTCTATAAAATG 702 ||||| ||||||||||| |||||| | |||||| || |||| ||||||| ||| |||||| Sbjct 589 CTTGATCAAGATGGGTACCACGGTACCTTGCTCATTATCAACGCCATCTACTACAAAATG 648 Query 703 CTTGACATCGCG 714 ||||||| ||| Sbjct 649 ATTGACATTGCG 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75571046080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5