BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04710.1
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487250 jgi|Araly1|487250|fgenesh2_kg.6__384__AT5G04710.1 2844 0.0
> Ahg487250 jgi|Araly1|487250|fgenesh2_kg.6__384__AT5G04710.1
Length=1853
Score = 2844 bits (1540), Expect = 0.0
Identities = 1771/1877 (94%), Gaps = 37/1877 (2%)
Strand=Plus/Plus
Query 120 ATGGCGGCCATAGCTCGTCTTCCACTAActcattctcttccctccatcttcaatccttca 179
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGGCCATAGCTCGTCTTCCACTAACTCATTCTCTTCCCTCCAAATTCAATCCTTCA 60
Query 180 tccttcctctctcagtctctctcttttcctacttatctccatcgctctccctttcgctcc 239
| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATTCCTCTCTCAATCTATTTCTTTTCCTACTTATCTCCATCGCTCTCCCTTTCGCTCC 120
Query 240 ttctcctcc-gt-ctctccAATCCTCTGCACCTCCCAT-CGCGATTCGAGATCGCCGGGG 296
|||| |||| | |||| | ||||| | |||| | | | ||||||||||||| ||||
Sbjct 121 TTCT-CTCCAATCCTCTGC--TCCTC--CTCCTCTC-TGGGTGATTCGAGATCGCTGGGG 174
Query 297 AGTGATTCTAATGCGTCGATTGTTGGGGATCTTCTGGATTATCTTAATGAATCCTGGACA 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 175 AGTGATTCTAATGCGTCGATTGTCGGGGATCTTCTGGATTATCTTAATGAATCCTGGACA 234
Query 357 CAGTTTCACGCCACTGCTGAGGCGAAGAGACAGCTTTTGGCTGCTGGGTTTGATCTCCTC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGTTTCACGCCACTGCTGAGGCGAAGAGACAGCTTTTGGCTGCTGGGTTTGATCTCCTC 294
Query 417 AGTGAAAACGAAGACTGGAATCTGAAACCTGGTGGCCGTTACTTCTTTACACGAAACATG 476
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 295 AGTGAAAACGAGGACTGGAAGCTGAAACCTGGTGGCCGTTACTTCTTTACACGAAACATG 354
Query 477 TCCTGTTTGGTTGCTTTTGCTGTCGGAGAAAAGTATGTGCCTGGTAATGGTTTTCATGCC 536
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 355 TCCTGTTTGGTTGCTTTTGCTGTCGGCGAAAAGTATGTTCCTGGTAATGGTTTTCATGCC 414
Query 537 ATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAACCGAAGTCTGCTTCATCCAAG 596
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 415 ATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAGCCCAAGTCTGCTTCATCTAAG 474
Query 597 TCTGGCTATCTCATGGTGAATGTTCAGACTTATGGAGGTGGTTTGTGGCACACATGGTTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCTGGCTATCTCATGGTGAATGTTCAGACTTATGGAGGTGGTTTGTGGCACACATGGTTT 534
Query 657 GATCGAGACTTAAGTGTTGCGGGGCGAGCAATTGTGAGAGCCAGTGATGGCTCGTTTGTT 716
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GATCGAGACTTGAGTGTTGCGGGGCGAGCAATTGTGAGAGCCAGTGATGGCTCGTTTGTT 594
Query 717 CATAGGCTTGTCAAAGTGAAAAGGCCATTACTAAGGGTACCCACTTTGGCCATTCATCTT 776
|| | ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 595 CACAAGCTCGTCAAAGTGAAGAGGCCATTACTAAGAGTACCCACTTTGGCCATTCATCTT 654
Query 777 GATCGCACAGTGAACAGTGATGGATTTAAACCAAATTTGGAGACCCAACTTGTTCCGCTA 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 GATCGCACAGTGAACAGTGATGGATTTAAACCGAATTTGGAGACCCAACTTGTTCCGCTA 714
Query 837 CTGGCAACAAAATCAGATGAATCCTCAGCAGAGTCCAAGGACAAAAATGTATCCTCCAAA 896
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTGGCAACGAAATCAGATGAATCCTCAGCAGAGTCCAAGGACAAAAATGTATCCTCCAAA 774
Query 897 GATGCTCATCATCCATTACTCATGCAGATTTTGTCAGATGACCTGGACTGTAAGGTCGAG 956
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GATGCCCATCATCCATTACTCATGCAGATTTTGTCAGATGACCTGGACTGTAAGGTCGAG 834
Query 957 GATATAGTGAGTCTTGAGTTAAATATCTGTGACACCCAACCTAGCTGCCTTGGAGGAGCA 1016
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 GATATAGTGAGTCTTGAGTTAAATATCTGTGACACCCAACCTAGCTGCCTAGGAGGAGCA 894
Query 1017 AATAATGAATTCATATTCTCTGGAAGACTTGATAATCTTGCATCAAGTTTCTGTGCTTTG 1076
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 AACAATGAATTCATATTCTCTGGAAGACTAGATAATCTTGCATCAAGTTTCTGTGCTTTG 954
Query 1077 AGAGCTCTCATTGATTCATGTGAATCATCAGAAAATCTGTCGACTGAACATGATATCCGG 1136
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 955 AGAGCTCTCATTGATTCATGTGAATCATCGGAAAGCCTGTCGACTGAACATGATATCCGG 1014
Query 1137 ATGATAGCTTTATTTGACAACGAGGAGGTTGGTTCAGATTCATGTCAAGGTGCTGGGGCG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 ATGATAGCTTTATTTGACAACGAGGAGGTTGGTTCAGATTCATGTCAAGGTGCAGGGGCG 1074
Query 1197 CCCACTATGTTTCAAGCAATGAGACGGATTGTGAGTTCCCTAGGAAATAAGCAGGTCACT 1256
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1075 CCCACTATGTTTCAAGCAATGAGACGGATTGTAAGTTCCCTAGGCAATAAGCAGGTCACT 1134
Query 1257 GAGTGTACATTTGACCGTGCTATCCGGAAATCGTTTCTTGTGTCTGCAGACATGGCTCAT 1316
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1135 GAATGTACATTTGACCGTGCTATCCGGAAATCTTTTCTTGTGTCTGCAGACATGGCTCAT 1194
Query 1317 GGAGTCCACCCCAACTTTGCAGACAAGCATGAAGAGAACCACCGTCCCCAACTACACAAG 1376
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1195 GGAGTGCACCCCAACTTTGCAGACAAGCATGAAGAGAACCACCGTCCTCAACTACGCAAG 1254
Query 1377 GGTCTTGTAATCAAACATAACGCAAATCAACGCTATGCAACCAGTGGAATCACTTCTTTT 1436
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1255 GGTCTGGTTATCAAACATAACGCAAACCAACGCTATGCAACCAGTGGAATCACTTCTTTT 1314
Query 1437 CTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGGAGTTTGTGGTGAGAAAC 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGGAGTTTGTGGTGAGAAAT 1374
Query 1497 GATATGGGATGTGGTTCAACAATAGGACCTATATTGGCTTCAGGAGTAGGGATCCGAACC 1556
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1375 GATATGGGATGTGGCTCAACAATAGGACCTATATTGGCTTCAGGAGTGGGGATCCGAACT 1434
Query 1557 GTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGTGTGAGAGAGATTTGTGGAACAGAC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGTGTGAGAGAGATTTGTGGAACAGAC 1494
Query 1617 GATATAGACATCGCGTACAGACATTTCAAGGCGTTTTATCGATCTTTCTCAAGCGTAGAC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GATATAGACATCGCGTACAGACATTTCAAGGCGTTTTATCGATCTTTCTCAAGCGTAGAC 1554
Query 1677 AAGAAGCTCGTTGTGGATGATTAACTCCCC-GGATATTC-TCTCTAGGCAACAAAGATCT 1734
|||||||||||||||||||||||||||||| ||||||| |||| || | |||||||||
Sbjct 1555 AAGAAGCTCGTTGTGGATGATTAACTCCCCTGGATATTAATCTCGAG-CT-CAAAGATCT 1612
Query 1735 TAAGACATGGTGAGAAATGTTAAGCTAGTTGCTTCTGTTCGTGGATGGTCCTCAGTCTCA 1794
|||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 1613 TAAGACATGGTGAGAA-TGTTCAGCTAGTTACTTCTGTTCGTGGCTGGTCCTCAGTCTCA 1671
Query 1795 CAACAAGAACAGAACCTAAAATT-GATTTTCTTGTTTAGGAAATTATAGAAACCAAATTG 1853
||||||||||||||||||||||| |||| |||||||||||||| || | |
Sbjct 1672 CAACAAGAACAGAACCTAAAATTTGATTCTCTTGTTTAGGAAA--AT----------T-G 1718
Query 1854 GAATGTAATCTTCTAGGTTAAGGTTCCGGTTTGTAACACTGCATATTGTTTTACCTTGAC 1913
|||| |||||||| |||||||||||||||||||||| || || ||||||| | | |||||
Sbjct 1719 GAATATAATCTTCAAGGTTAAGGTTCCGGTTTGTAATACCGCCTATTGTTAT-C-TTGAC 1776
Query 1914 AAATAAGCTTCTTTCTAATTTGTCGAATATTTATATTTTT-CA------GAAGAACCTTT 1966
||||||| |||||| ||||||||||||| ||||||||||| || |||||||||||
Sbjct 1777 AAATAAGATTCTTTTTAATTTGTCGAATTTTTATATTTTTTCATATACAGAAGAACCTTT 1836
Query 1967 AATTTTCTTTCCAACAG 1983
|||||| ||||||||||
Sbjct 1837 AATTTTATTTCCAACAG 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74542609465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5