BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04720.1
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487251 jgi|Araly1|487251|fgenesh2_kg.6__385__AT5G04720.1 3707 0.0
Ahg473526 jgi|Araly1|473526|fgenesh2_kg.1__3480__AT1G33560.1 1009 0.0
> Ahg487251 jgi|Araly1|487251|fgenesh2_kg.6__385__AT5G04720.1
Length=2605
Score = 3707 bits (2007), Expect = 0.0
Identities = 2328/2484 (94%), Gaps = 17/2484 (1%)
Strand=Plus/Plus
Query 11 CTCTCTTTTTCTCATCGGCCTTTGCCATGGCAGATATAATCGGCGGCGAAGTTGTGACGG 70
|||||| ||||||||||| | || ||||||||||||| ||||||||||||||||||||||
Sbjct 1 CTCTCTCTTTCTCATCGG-CGTTCCCATGGCAGATATCATCGGCGGCGAAGTTGTGACGG 59
Query 71 AGCTCGTGAGGCAGCTCTATGCGGTTTCTCAAAAAACCCTCAGATGCAGAGGCATCGCCA 130
||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 60 AGCTCGTAAAGCAGCTCTATGCGGTATCTCAAAAAGCCCTCAGATGCAGAGGCATCGCCA 119
Query 131 AAAATCTCGCCACCATGATCGATGGTCTTCAACCAACGATCAAGGAGATCCAATACAGCG 190
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct 120 AAAATCTCGCCACCATGATCGAGGGTCTTCAACCTACGATCAAGGAGATTCAATATAGCG 179
Query 191 GCGTCGAGCTCA-CACCTCATCGCCAGGCTCAGTTGCGTATGTTCTCGGAAACCTTAGAC 249
|||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 180 GCGTCGAGCTCAGC-CCTCATCGCCAGGCTCAATTGCGTATGTTCTCAGAAACCTTAGAC 238
Query 250 AAGTGTAGGAAGCTCACCGAGAAAGTTCTTAAATCCAGCCGTTGGAACATGGTTAGACAG 309
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 239 AAGTGTAGGAAGCTCACCGAGAAAGTTCTCAAATCCAGCCGTTGGAACATGGTTCGACAG 298
Query 310 CTAC-TCCATGTTAGGAAAATGGAGAATCTTCAGAGTAAAGTGTCTAGCTTTCTCAACGG 368
| | ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||
Sbjct 299 GT-CATCCATGTTAGGAAAATGGAGAGTCTCCAGAGTAAAGTCTCTAGCTTTCTTAACGG 357
Query 369 TCAATTGTTAGTCCATGTTCTCGCTGATGTTCATCATGTTCGAGCCGATTC-TGAATTCC 427
|||||||||||||||||||| |||||||||||||||||||||| |||| | || ||
Sbjct 358 CCAATTGTTAGTCCATGTTCTTGCTGATGTTCATCATGTTCGAGTCGATACGGGAGTT-- 415
Query 428 GG-TTCGATCGGATTGATAGGAAGGTTGATAGTTTGAATGAGAAGCTTGGTTCTATGAAA 486
|| ||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||
Sbjct 416 GGATTCGATCGGATTGATAGGAAGGTTGATTGCTTGAATGAGATGTTTGGTTCTATGAAA 475
Query 487 CTCAGGGGAAGTGAATCGTTGCGTGAGGCGTTGAAGACGGCCGAGGCTACCGTTGAGATG 546
|||||||||||||||| |||| ||||| ||||||| || ||||||||| | ||||||
Sbjct 476 ATCAGGGGAAGTGAATCCATGCGGGAGGCCTTGAAGATGGAGGAGGCTACCATGGAGATG 535
Query 547 GTGACAACCGATGGTGCTGATTTGGGGGTGGGA-TTGGATTTGGGAAAGAGGAAGGTGAA 605
|||| || |||| |||||||||||| | | | ||||||||||||||||| ||||||||
Sbjct 536 GTGATGACTGATGCTGCTGATTTGGGAG-GAAATTTGGATTTGGGAAAGAGCAAGGTGAA 594
Query 606 GGAGATGTTGTTTAAATCCATTGATGGGGAAAGACTTATTGGTATCTCTGGGATGAGTGG 665
|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||
Sbjct 595 GGAGATGTTGTTTAAATCCAATGATGATGAAAGACTTATCGGTATCTCAGGGATGAGTGG 654
Query 666 TTCAGGGAAAACCACTCTTGCCAAAGAGCTTGCCCGGGACGAGGAGGTTCGAGGCCACTT 725
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 655 TTCAGGGAAAACCACTCTTGCCAAAGAGCTTGCACGGGACGAAGAAGTTCGAGGCCACTT 714
Query 726 TGGGAACAAGGTTTTGTTTCTGACTGTGTCACAATCTCCCAATCTTGAGGAGCTTAGAGC 785
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGGAACAACGTTTTGTTTCTGACTGTGTCACAATCTCCCAATCTTGAGGAGCTTAGAGC 774
Query 786 CCATATATGGGGATTTCTTACTAGTTATGAGGCTGGGGTTGGTGCTACTCTTCCAGAATC 845
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 775 CCATATATGGGGATATCTTACTAGTTATGAGGCTGGGGCTGGTGCCACTCTTCCGGAATC 834
Query 846 GAGGAAGCTAGTGATCCTTGATGATGTTTGGACAAGGGAATCTCTGGACCAGCTGATGTT 905
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 835 TAGGAAGCTAGTGATCCTTGATGATGTTTGGACAAGGGAATCTCTGGACCAGCTCATGTT 894
Query 906 CGAAAATATTCCTGGAACCACAACTCTTGTGGTCTCACGGTCTAAACTCGCAGATTCTAG 965
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CGATAATATTCCTGGAACCACAACTCTTGTGGTCTCACGGTCTAAACTCGCAGATTCTAG 954
Query 966 AGTCACTTATGATGTAGAGTTACTCAATGAACATGAAGCAACGGCCCTGTTCTGTCTCTC 1025
|| |||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 955 AGCCACTTATGATGTAGAGTTACTCAATGAACACGAAGCAACGTCTCTGTTCTGTGTCTC 1014
Query 1026 TGTTTTCAATCAGAAATTAGTGCCTTCAGGGTTCAGCCAAAGTTTGGTCAAGCAGGTTGT 1085
|| |||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1015 TGCTTTCAACCAGAAATCAGTGCCTTCAGGATTCAGTAAAAGTTTGGTCAAGCAGGTTGT 1074
Query 1086 TGGGGAGTGTAAAGGTCTACCTTTGTCTCTGAAAGTCATTGGTGCTTCATTGAAAGAACG 1145
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1075 TGGGGAGTGTAAAGGTCTACCTTTGGCTCTGAAAGTCATCGGTGCTTCATTGAAAGAACG 1134
Query 1146 ACCTGAAAAATATTGGGAAGGTGCAGTGGAGAGGCTATCAAGAGGTGAACCTGCTGATGA 1205
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1135 ACCTGAAAAATATTGGGAAGGTGCAGTAGAGAGGTTATCAAGAGGTGAACCTGCTGATGA 1194
Query 1206 AACTCATGAGAGTAGAGTGTTTGCTCAAATCGAAGCAACTCTAGAAAATCTTGACCCTAA 1265
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AACGCATGAGAGTAGAGTTTTTGCTCAAATCGAAGCAACTCTAGAAAATCTTGACCCTAA 1254
Query 1266 AACCAGAGATTGTTTCTTGGTTCTCGGTGCTTTCCCTGAAGATAAGAAGATCCCTCTTGA 1325
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1255 AACCAGAGAGTGTTTCTTGGTTCTGGGTGCTTTCCCTGAAGACAAGAAGATCCCTCTTGA 1314
Query 1326 TGTTCTCATCAACGTGTTGGTTGAGTTGCATGATCTCGAGGATGCAACTGCTTTTGCTGT 1385
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1315 TGTTCTCATCAACGTGTTAGTCGAGTTGCATGATCTCGAGGACGCAACTGCTTTTGCTGT 1374
Query 1386 TATTGTTGATTTAGCAAACAGGAATCTCCTTACTCTTGTGAAAGATCCAAGGTTTGGACA 1445
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1375 TATTGTTGATTTAGCAAACAGGAATCTCCTTACTCTCGTGAAAGATCCAAGGTTTGGCCA 1434
Query 1446 TATGTACACTAGCTACTATGATATATTTGTCACGCAGCATGATGTTCTAAGAGATGTAGC 1505
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1435 TATGTACACTAGCTACTATGATATATTTGTGACGCAGCATGATGTTCTAAGAGATGTAGC 1494
Query 1506 ACTTCGTCTTAGCAATCATGGGAAAGTAAATAACAGAGAGCGGTTATTGATGCCAAAAAG 1565
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1495 ACTTCGTCTTAGCAATCTTGGGAAAGTAAATAACAGAGAGCGATTATTGATGCCAAAAAG 1554
Query 1566 AGAGTCAATGCTTCCGAGAGAATGGGAGAGGAACAATGATGAGCCATACAAAGCCAGAGT 1625
||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1555 AGAGTCAATACTTCCAAGAGAATGGGAGAGAAACAATGATGAGGCATACAAAGCCAGAGT 1614
Query 1626 AGTTTCCATTCACACAGGAGAAATGACTCAGATGGATTGGTTTGACATGGAACTCCCTAA 1685
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1615 AGTTTCCATTCACACAGGAGAAATGACTGAGATGGATTGGTTTGACATGGAACTCCCTAA 1674
Query 1686 GGCTGAAGTTTTGATACTACACTTCTCTTCTGACAAGTATGTATTGCCTCCTTTCATTGC 1745
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1675 GGCTGAAGTTTTGATACTACACTTTTCTTCTGAAAAGTATGTGTTGCCTCCTTTCATTGC 1734
Query 1746 TAAGATGGGCAAGCTTACAGCGCTCGTGATCATCAACAATGGTATGTCTCCTGCGCGTCT 1805
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1735 TAAGATGGGCAAGCTTAGGGCGCTCGTGATCATCAACAATGGTATGTCTCCAGCGCGTCT 1794
Query 1806 ACATGACTTCTCCATCTTTACCAATTTGGCCAAACTCAAGAGTCTCTGGCTTCAGAGGGT 1865
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1795 ACATGACTTCTCCATCTTTACCAATTTGGCCAAACTCAAGAGTCTCTGGCTTGAGAGGGT 1854
Query 1866 TCATGTCCCTGAACTCTCTAGCAGTACAGTGCCCTTGCAAAACCTCCACAAGCTGTCTCT 1925
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1855 TCATGTCCCTGAACTCTCTAGCAGTACAGTGCCATTGCAAAACCTCCACAAGCTGTCTCT 1914
Query 1926 CATATTCTGCAAGATCAACACTAGTCTTGATCAGACAGA-GCTAGACATTGCCCAAATCT 1984
||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1915 CATCTTCTGCAAGATCAACACTAGTCTTGATCAGACAGAAG-TAGACATTGCCCAAATCT 1973
Query 1985 TCCCAAAATTGTCTGATCTTACAATAGATCATTGTGATGATCTTCTGGAACTACCTTCGA 2044
||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 1974 TCCCAAAATTGTCTGATCTCACAATAGATCATTGCGATGATCTTGTGGAACTACCTTCGA 2033
Query 2045 CCATCTGTGGAATCACCTCTCTCAATTCCATCAGCATAACAAATTGTCCCCGCATCAAGG 2104
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2034 CCATCTGTGGTATCACCTCTCTCAACTCCATCAGCATAACAAATTGTCCCCGCATCAAAG 2093
Query 2105 AATTGCCTAAGAATCTGAGTAAGCTAAAAGCCCTTCAGCTTCTGAGGCTATACGCTTGCC 2164
||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2094 AATTGCCTAAGTATCTCAGTAAGCTAAAATTCCTTCAGCTTCTGAGGCTATACGCTTGCC 2153
Query 2165 ATGAGCTG-AATTCTCTGCCTGTGGAAATCTGTGAACTGCCAAGACTAAAGTATGTTGAC 2223
||||||| ||| ||||||| || ||| ||||||| ||||||||| ||||||| |||||
Sbjct 2154 CTGAGCTGCAAT-CTCTGCCAGTAGAACTCTGTGAGCTGCCAAGATTAAAGTACCTTGAC 2212
Query 2224 ATTTCTCAATGTGTCAGCCTGAGTTCTCTTCCGGAAAAGATAGGAAAGGTAAAGACACTT 2283
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2213 ATCTCTCAATGTGTCAGCCTGAGTTCTCTTCCGGAAAAGATAGGAAAGGTTAAGACACTT 2272
Query 2284 GAGAAAATCGACACGAGGGAATGCAGCTTATCGAGCATACCAAACTCTGTGGTTTTATTG 2343
||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||| ||||
Sbjct 2273 GAGAAAATCGACATGAGGGAATGCAGCTTATCAAGCATACCAAGCTCTGCGGTTTCATTG 2332
Query 2344 ACTTCTCTACGCCATGTAATATGCGATAGAGAGGCTTTATGGATGTGGGAAAAGGTCCAG 2403
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2333 ACTTCTCTACGCCATGTAATATGCGATAGAGAGGCTTTGTGGATGTGGGAAAAGGTCGAG 2392
Query 2404 AAGGCGGTTGCAGGACTTCGTGTTGAAGCTGCGGAAAAATCTTTCAGCAG-GGATTGGCT 2462
||||| ||| |||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 2393 AAGGCCGTTACAGGACTTCGCGTTGAAGCTGCGGAAAAATCTTTCAGC-GTGGATTGGCT 2451
Query 2463 CGACGATTAGGTTCGTGATTCTCT 2486
|||||| ||||||| |||||||||
Sbjct 2452 CGACGAGTAGGTTCTTGATTCTCT 2475
> Ahg473526 jgi|Araly1|473526|fgenesh2_kg.1__3480__AT1G33560.1
Length=2824
Score = 1009 bits (546), Expect = 0.0
Identities = 1518/1969 (77%), Gaps = 139/1969 (7%)
Strand=Plus/Plus
Query 573 GGTGGGATTGGATTTGGGAAAGAGGAAGGTGAAGGAGATGTTGTTTAAATCCATTGATGG 632
||| |||||||||||||| ||||| ||||||||||||||| ||||||| | || | ||
Sbjct 810 GGTAGGATTGGATTTGGGGAAGAGAAAGGTGAAGGAGATGATGTTTAAGT---TT-ACGG 865
Query 633 GGAAAGACTT-ATTGGTATCTCTGGGATGAGTGGTTCAGGGAAAACCACTCTTGCCAA-A 690
| | | || |||| |||||||| ||||| |||||||||||||||||||||| ||| |
Sbjct 866 ATACATATTTGTTTGGGATCTCTGGAATGAGCGGTTCAGGGAAAACCACTCTTG-CAATA 924
Query 691 GAGCTTGCCCGGGACGAGGAGGTTCGAGGCCACTTTGGGAACAAGGTTTTGTTTCTGACT 750
|||||| | | ||||| || |||||||||| |||| |||||||||||||||||||| |
Sbjct 925 GAGCTTTCAAGAGACGATGATGTTCGAGGCCTCTTTAAGAACAAGGTTTTGTTTCTGATT 984
Query 751 GTGTCACAATCTCCCAATCTTGAGGAGCTTAGAG-CCCATATATGGGGATTTCTTACTAG 809
||||||| ||||| ||| ||||| | | | ||| |||| | | ||||| | ||
Sbjct 985 GTGTCACGGTCTCCGAATTTTGAGAATC-TGGAGTTTTGTATACGAGAATTTC-T--TA- 1039
Query 810 TTATGAGGCTGGGGTTGGTGCTACTCTTCCAGAATCGAGGAAGCTAGTGATCCTTGATGA 869
|||| ||| | | | | | | || | ||||||||||||||||||||||
Sbjct 1040 --ATGA---TGGAG-T--T-C-A-------ACAA-C--GGAAGCTAGTGATCCTTGATGA 1079
Query 870 TGTTTGGACAAGGGAATCTCT-GGACCAGCTGATGTTCGAAAATATTCCTGGAACCACAA 928
|||||||||||||||||| || |||| ||||| ||| | ||||| | | ||||| |||||
Sbjct 1080 TGTTTGGACAAGGGAATC-CTTGGACAAGCTGTTGT-CTAAAAT-T-CGTGGAAGCACAA 1135
Query 929 CTCTT-GTGGTCTCACGGTCTAAACTCGCAGATTCTAGAGTCACTTATGATGTAGAGTTA 987
|| || || ||||||||||| || || |||||| ||||| ||| || |||| || |||
Sbjct 1136 CT-TTAGTAGTCTCACGGTCCAAGCTTGCAGATCCTAGAACCACCTACAATGTGGAATTA 1194
Query 988 CTCAATGAACATGAAGCAACGGCCCTGTTCTGTCTCTCTGTTTTCAATCAGAAATTAGTG 1047
| || ||| ||||||||| | |||| || ||||||| || |||| |||| || | |
Sbjct 1195 TTAAAGGAAGATGAAGCAATGTCCCTCTTGTGTCTCTATGCTTTCGATCATAAGTCCCCG 1254
Query 1048 CCTTCAGGGTTCAGCCAAAGTTTGGTCAAGCAGGTTGTTGGGGAGTGTAAAGGTCTACCT 1107
||||| |||||| ||| ||||| ||||||||||||| |||||||||||| |||||
Sbjct 1255 CCTTCTCCATTCAGCAAAAAATTGGTGAAGCAGGTTGTTGATGAGTGTAAAGGTTTACCT 1314
Query 1108 TTGTCTCTGAAAGT-CATTGGTGCTTCATTGAAAGAACGA-CCTGAAAAATATTGGGAAG 1165
|| ||| ||||||| | | |||||||| || ||| ||| | ||||||| |||||||||||
Sbjct 1315 TTATCTTTGAAAGTTC-TCGGTGCTTCTTTAAAA-AACAAACCTGAAAGATATTGGGAAG 1372
Query 1166 GTGCAGTGGAGAGGCTATCAAGAGGTGAACCTGCTGATGAAACTCATGAGAGTAGAGTGT 1225
| | |||| ||||| ||| |||||| ||| ||||||||||||||||||||| |||||||
Sbjct 1373 GCGTAGTGAAGAGGTTATTAAGAGGAGAAGCTGCTGATGAAACTCATGAGAACAGAGTGT 1432
Query 1226 TTGCTCAAATCGAAGCAACTCTAGAAAATCTTGACCCTAAAACCAGAGATTGTTTCTTGG 1285
||||||| || |||| || ||||||||| || || | |||| |||||| ||||||||||
Sbjct 1433 TTGCTCATATGGAAGAAAGTCTAGAAAACCTCGAGTCGAAAATCAGAGAGTGTTTCTTGG 1492
Query 1286 TTCTCGGTGCTTTCCCTGAAGATAAGAAGATCCCTCTTGATGTTCTCATCAACGTGTTGG 1345
| | |||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||
Sbjct 1493 ATATGGGTGCTTTCCCTGAAGGCAAGAAGATCCCTCTTTATGTTCTCACCAACGTGTGGG 1552
Query 1346 TTGAGTTGCATGATCTCGAGGATGCA-ACTGC-TTTTGCTGTTATTGTT-GATTTAGCAA 1402
||||| ||||||| | || || | | ||||| |||| || || || || | ||||||
Sbjct 1553 TTGAGAGGCATGATATTGACGAAG-AGACTGCGTTTTCCT-TTGTTCTTCG-TTTAGCTG 1609
Query 1403 ACAGGAATCTCCTTACTCTTGTGAAAGATCCAAGGTTTGGAC-ATATGTACACTAGCTAC 1461
||| ||||||||| ||| | |||||| ||||||||||||| | || || ||| | |||||
Sbjct 1610 ACAAGAATCTCCTGACTATAGTGAAAAATCCAAGGTTTGG-CGATGTGCACATTGGCTAC 1668
Query 1462 TATGATATATTTGTCACGCAGCATGATGTTCTAAGAGATGTAGCACTTCGTCT-TAGCAA 1520
|||||| ||||||| ||||| || |||||||| ||||| |||| |||| | | | |||
Sbjct 1669 TATGATGTATTTGTGACGCAACACGATGTTCTCAGAGACCTAGCCCTTCATATGTC-CAA 1727
Query 1521 TCATG-GGAAAGTAAATAACAGAGAGCGGTTATTGATGCCAAAAAGAGAGTCAATGCTTC 1579
|| || ||| ||||||| |||||||||||||| ||||| ||||||||| |||||||||
Sbjct 1728 TCGTGTGGAC-GTAAATAGGAGAGAGCGGTTATTAATGCCGAAAAGAGAGCCAATGCTTC 1786
Query 1580 CGAGAGAATGGGAGAGGAACAATGATGAGCCATACAAAGCCA-GAGTAGTTTCCATTCAC 1638
| ||||||||||| | ||| || |||||||||| | |||| || |||| ||| ||||
Sbjct 1787 CAAGAGAATGGGAAAAGAATAACGATGAGCCATTTGATGCCAAGA-TAGTCTCCCTTCAT 1845
Query 1639 ACAGG-A-GAA--ATG-A-CTC-AGATGGATT-GGT----T---TGACATGGA------- 1676
||||| | ||| || | || | ||| ||| || | ||| |||||
Sbjct 1846 ACAGGCAAGAATTATTTAACTTTAAATGAATTTGGGGAAATGGATGAAATGGATTGGTTT 1905
Query 1677 -AC-T---CC--C-TAAGGCTGAAGTTTTGATACT-ACACTTCTCTTCTGACAAGTATGT 1727
|| | || | |||||| |||||||| ||||| | ||||||||||||| || || ||
Sbjct 1906 GACATGGACCTTCCTAAGGCAGAAGTTTTAATACTGA-ACTTCTCTTCTGAAAACTACGT 1964
Query 1728 ATTGCCTCC-TTTCATTGCTAAGATGGGCA-AGCTTACAGCGCTCGTGATCATCAACAAT 1785
||||| || ||| |||| ||||||| | | | || | | ||||||||| |||||||||
Sbjct 1965 CTTGCCACCATTT-ATTGGTAAGATGAGTAGA-CTCAGGGTGCTCGTGATTATCAACAAT 2022
Query 1786 GGTATGTCTCCTGCGCGTCTACATGACTTCTCCATCTTTACCAATTTGGCCAAACTCAAG 1845
|| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 2023 GGAATGTCTCCTGCGCGTCTACATGGCTTCTCCATCTTTGCCAATTTGGCCAAACT-AAG 2081
Query 1846 A-GTCTCTGGCTTC-AGAGGGTTCATGTCCCTGAACTCT-CTAGCAGTAC-AGTGCC-CT 1900
| |||||||||| | ||||||| |||||||||||| | | | ||||| || | | || ||
Sbjct 2082 AAGTCTCTGGCT-CGAGAGGGTACATGTCCCTGAATT-TACCAGCAGCACCATT-CCACT 2138
Query 1901 TGCAAAACCTCCACAAGCTGTC-TCTCATATTCTGCAAGATCAACACTAGTCTT-GATCA 1958
| |||| || || ||| || | ||| || || || ||| |||||| ||| ||| |||||
Sbjct 2139 -GAAAAAACTGCAAAAGATG-CATCTGATCTTTTGTAAGGTCAACAATAG-CTTTGATCA 2195
Query 1959 GACAGAGC-TA-GACAT-TGCCCAAATCTTCCCAAAATTGTCTGATCTTACAATAGATCA 2015
||| | | | ||||| | | ||||| ||||||| ||||||||||| || || |||||
Sbjct 2196 GAC-GT-CATTCGACATCT-CACAAATATTCCCAAGCTTGTCTGATCTCACTATCGATCA 2252
Query 2016 TTGTGATGATCTTCTGGAACTAC-CTTCGACCATCTGTGGAATCACCTCTCTCAATTC-C 2073
|||||||||||| ||||| || || | | || || ||| | ||||||||||| || |
Sbjct 2253 CTGTGATGATCTTGTGGAATTAAACTCC-AT-ATTTG-GGA-TAACCTCTCTCAACTCTC 2308
Query 2074 ATCAGCATAACAAATTGTCCCCGCAT-CAAGGAATTGCCTAAGAATCTGAGTAAGCTAAA 2132
|||||||||| || ||||| | || | | || |||| |||||||||||||| ||| |
Sbjct 2309 -TCAGCATAACCAACTGTCCAAGAATTCTTG-AACTGCCCAAGAATCTGAGTAATCTACA 2366
Query 2133 AGCC-CTTCAGCTTCTGAGGCTATACGCTTGCCATGAGCTGA-ATTCTCTGCCTGTGGAA 2190
| | ||| | | ||| ||| |||| ||||||| ||||||| || | || || || |||
Sbjct 2367 -GTCTCTTGAACGTCTAAGGTTATATGCTTGCCCCGAGCTGATATCC-CTCCCGGTCGAA 2424
Query 2191 ATCTGTGAACTGCCAAGACTAAAGTATGTTGACATTTCTCAATGTGTCAGCCTGAGTTCT 2250
|| ||||| |||||| | |||||||| ||||| ||||| || ||||||||||||| || |
Sbjct 2425 ATTTGTGAGCTGCCATGTCTAAAGTACGTTGATATTTCACAGTGTGTCAGCCTGATTTAT 2484
Query 2251 CTTCCGGAAAAGATAGGAAAGGTAAAGACACTTGAGAAAATCGACACGAGGGAATGCAGC 2310
||||| |||||| | |||||| || || |||||||||||| |||| | | ||||||||
Sbjct 2485 CTTCCTGAAAAGTTTGGAAAGCTAGGGAAACTTGAGAAAATTGACATGCGAGAATGCAGT 2544
Query 2311 TTATCGAGCATACCAAACTCTGTGGTTTTATT-GACTTCTCTACGCCATGTAATATGCGA 2369
|||| | | |||||| ||||| | | | | | ||||||| ||||| | |||||
Sbjct 2545 TTATTGGGTTTACCAAGTTCTGTAGCTGCCCTCGTGT-CTCTACGTCATGTCGTTTGCGA 2603
Query 2370 TAGAG-AGGCTTTATGGATGTGGGAAAAGGTCCAGAAGGCGGTTGCAGGA-CTTCGTGTT 2427
| ||| || ||| | ||||||||||||||| | ||| ||| | ||| ||| | ||
Sbjct 2604 T-GAGGAGACTTCGTCTATGTGGGAAAAGGTCAAAAAGATTGTTCC-GGAACTTTGCATT 2661
Query 2428 GAAG-CTGCGGAAAAAT-CTTTCAGCAGG-GATTGGCTCGACGATTAGG 2473
|||| | || |||||| ||| || | | |||||||| ||||||||||
Sbjct 2662 GAAGTC-GCCAAAAAATGCTT-CACC-GTTGATTGGCTTGACGATTAGG 2707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101510502925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5