BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04730.1
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939874 jgi|Araly1|939874|scaffold_600418.1 1471 0.0
> Ahg939874 jgi|Araly1|939874|scaffold_600418.1
Length=1874
Score = 1471 bits (796), Expect = 0.0
Identities = 970/1053 (92%), Gaps = 16/1053 (2%)
Strand=Plus/Plus
Query 854 ATCAAGCAAACATATGATCTaaaaaaaaGACATTCTCAAGCTCAAAAGTTGCTAAAACAA 913
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 810 ATCATGCAAACATATGATCTAAAAGAAAGACATTCTCAAGCTCAAAACTTGCTAAAAAAA 869
Query 914 ATGTGCACATCACTACGAGATATCATGGCCAAGAACGAGATCAGGTGGAAAGAAACAGTC 973
||||||||| ||||| || ||||| |||| || | || || |||||||| | |||
Sbjct 870 ATGTGCACAGAACTACCAG---GCATGGTCAAGGAC-A-AT-AGTTGGAAAGAGATGGTC 923
Query 974 TATGAAGCACTACTTGAAGCGGCGAAGAGTGGGAACAGGGATTTTTTCATCGAGATTATC 1033
|||| ||||||||||||||||| ||||| |||||||| ||| |||||||| ||||| |||
Sbjct 924 TATGGAGCACTACTTGAAGCGGTGAAGAATGGGAACAAGGAATTTTTCATTGAGATAATC 983
Query 1034 AAATGTAACTCTCAACTTCTTTGGATCTTGAACCCT-ACCTCTGGCCGAAACCTCTTTCA 1092
||||||||| |||||||||||||||||| ||| || | |||||||||||||||||||||
Sbjct 984 AAATGTAACCCTCAACTTCTTTGGATCTCGAAAGCTGA-CTCTGGCCGAAACCTCTTTCA 1042
Query 1093 GCTGGCCGTTGAATTCAAGAAAGAGAAGATCTTTAATCTCATACATGGTTTAGATGATAG 1152
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1043 GCTGGCCGTTGAATTCAAGAAAGATAAGATCTTTAACCTCATACATGGTTTAGATGATAG 1102
Query 1153 AAAGGTCACGCTTCTTAGATCTTACGACAA-AGGAAACAATAACATTCTCCATATCGCCG 1211
|||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 1103 AAAGGTCACGCTGCTTAGATCTTACGACAATA-AAAACAACAACATTCTCCATATCGCCG 1161
Query 1212 GTCGTCTCTCTACTCCCGACCAACTTTCTAAGATTTCTGGAGCTGCTCTCAAGATGCAAA 1271
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CTCATCTCTCTACTCCCGACCAACTTTCTAAGATTTCTGGAGCTGCTCTCAAGATGCAAA 1221
Query 1272 GAGAGTCTCAATGGTTTAAGGAAGTAGAGAGCTTGGTATCAGAACGTGAAGTAGTGCaaa 1331
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1222 GAGAGACTCAATGGTTTAAGGAAGTAAAAAGCTTGGTATCAGAACGTGAAGTAGTGCAAA 1281
Query 1332 aaaaCAAGGACAACAAGACCCCGCGACAAATATTCGAACATTATCACG-AACATCTACGA 1390
||||||| | || |||||||||||||||||||||||| ||| ||||| ||| | |||||
Sbjct 1282 AAAACAACAAGAAGAAGACCCCGCGACAAATATTCGAAGATTCTCACGAAAC-TTTACGA 1340
Query 1391 AAAGAAGGAGAAGAATGGATGAAATACACTGCCACTGCTTGTAGCTTCGTGGCGGCTCTC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1341 AAAGAAGGAGAAGAATGGATGAAATACACTGCCACTGCTTGTAGCTTCGTGGCAGCTCTC 1400
Query 1451 ATTGCAACTGTCACTTTTCAAGCCATATTCACTGTTCCTGGAGGTATTGATGGAACTTCG 1510
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1401 ATTGCAACTGTCACTTTTCAAGCCATATTCACTGTTCCTGGAGGTACTGATCAAACTTCG 1460
Query 1511 GGTTCACCTCTTATTCTTAATGACTTACATTTCA-GAGCGTTCATTTTCACAGACACTCT 1569
||| ||||| | ||||| ||||||||||||||| | | |||||| |||||| |||||||
Sbjct 1461 GGTGCACCTATCCTTCTTCATGACTTACATTTCACG-GGGTTCATCTTCACAAACACTCT 1519
Query 1570 CGCCTTCTTCGCCTCCTGCATCTCTGTGCTCATATTCCTCAGCATTCTGACCTCAAGATA 1629
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1520 CGCCTTCTTCGCCTCCTGCATCTCTGTGCTCATATTCCTCAACATTCTGACCTCAAGGTA 1579
Query 1630 CTCTTTTGATGACTTCATTGTATCACTTCCTAGAAAGATGATATTGGGTCAATCCATTCT 1689
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1580 CTCTTTTGATGACTTCATTGTATCACTTCCTAGAAAGATGATATTGGGTCAATCAATTCT 1639
Query 1690 GTTTATCTCTATTGCCTCAATGCTTGTTGCATTTATCACGTCGCTTTCCGCGTCAATGCG 1749
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1640 GTTTATCTCTATTGCCTCAATGCTTGTTTCATTTATCACGTCCCTTTCCGCGTCAATGCG 1699
Query 1750 TCACAAGCCAGCGCTTGTA-TACCCACTGAAGCCACTCGCCAGCTTCCCATCGCTTCTCT 1808
|||| |||| |||||||| | |||||| |||||||||||||||||||| ||| ||||||
Sbjct 1700 GCACAGGCCAACGCTTGTAGT-CCCACTCAAGCCACTCGCCAGCTTCCCTTCGATTCTCT 1758
Query 1809 TCTTGATGTTGCAATATCCTCTTCTCAAGGAGATGATTTCTTCCACCTATGGCAAACGAC 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 TCTTGATGTTGCAATATCCTCTTCTCAAGGAGATGATTTCTTCCACCTATGGCAAACGAC 1818
Query 1869 TTTTCTACCGCGATACAAAGAACTGGCTACCAT 1901
| |||||||||||||||||||| ||||||||||
Sbjct 1819 TCTTCTACCGCGATACAAAGAATTGGCTACCAT 1851
Score = 549 bits (297), Expect = 3e-155
Identities = 602/740 (81%), Gaps = 57/740 (8%)
Strand=Plus/Plus
Query 71 GTGCCAGGTTCTTCGGACGAAATG-CAAGTTTTAGGTGAAATTTGTGAAAATTTATCACT 129
|||||||||||||| | | | || | || ||||||||||||||||||| |||||||| |
Sbjct 87 GTGCCAGGTTCTTCACAAGGAGTGTC-AGATTTAGGTGAAATTTGTGAATATTTATCATT 145
Query 130 ATCACAGCAA-ATTAGCGACGATGATTTGGAGCGCGTGAAAAG-AAACTTCTTGAACCTG 187
|||||| || |||||||||||||||||||| | ||| |||| ||| |||| |||||||
Sbjct 146 ATCACA-AAACATTAGCGACGATGATTTGGAACACGT-TAAAGTAAAGTTCTCGAACCTG 203
Query 188 CAGACAGAGACAATTACTGCCTTGATGGACGCATTTGAGATAACATGGCAAAAAACATGT 247
|||| ||| |||| |||||||| ||| ||| ||||||||| | ||| |||||| |||||
Sbjct 204 CAGAGAGACACAACTACTGCCTGGATCGACCCATTTGAGACACCATTGCAAAACGCATGT 263
Query 248 AGTCGACGTCAATT-G--GAGATCGTCAAGAAGCTACTATTGGACGAAATGACGAGTCGT 304
||||| ||||| || | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 264 AGTCGCCGTCAGTTGGCCGAGATCGTCAAGAAGCTACTATTGCACGAAATGACGAGTCGT 323
Query 305 GGCCAAATGGAAAACGATGCTTATTGTCAAAGTTTAGCGCTCGATATTGCTGCCGGGAAT 364
|||||||||| ||| || ||||||||||||||||||||||||||||||||| |||| |
Sbjct 324 GGCCAAATGGCAAATGACATTTATTGTCAAAGTTTAGCGCTCGATATTGCTGCTGGGAGT 383
Query 365 GGCAATTTGACGAGGGTAAAGCAACTGTGTGAACCCCATCTCAACCAGCCGCTTGCTCGT 424
|||||||||| || ||| | | | |||||||||| | ||| |||||||| ||||||||
Sbjct 384 GGCAATTTGAAGATGGTTAGGGACCTGTGTGAACTCTATCCCAACCAGCTGCTTGCTCA- 442
Query 425 A-ATAATTCAGTT-CGCTATGGGCTAGCTATACCGGTTGTGCGGGCATCTAATGCAGGGC 482
| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 443 AGATAATTCAGTTTC-CTATGGGCTAGCAATACCGGTTGTGCGGGCATCTAATGCAGGCC 501
Query 483 ATAAAAAGGTCACTGACTACCTTTATTACAATCATTATAAGAGA-ACCCTTCCTCTTGTT 541
|| ||||||||||| | ||||||||| ||| || || ||| | | |||| || | ||
Sbjct 502 ATGGAAAGGTCACTGGCAACCTTTATTTCAA-CA--ATCAGA-ATATACTTCTTCCTATT 557
Query 542 TTGGAGAATGATAATGATGTATATTGGGCTACATGTCTCCTTCTCGATGCCATATTTTAT 601
||| || || | || | | |||||||||||| ||||||||||| |||||||||||||||
Sbjct 558 TTGAAGGAT-A-AACAAGG-ATATTGGGCTACCTGTCTCCTTCTGGATGCCATATTTTAT 614
Query 602 GGATTTCT---T-G-----A----C----A----TTGCGTTGGACATCATCA-AGCATTT 639
|||||||| | | | | | |||||||||||||||||| | || |
Sbjct 615 GGATTTCTAGCTTGGTTTCATGGGCTGTTAGACATTGCGTTGGACATCATCATAA-ATGT 673
Query 640 ACCGTCTGTGGCCGTGACTAAACACGCAAGGCAAAGATTACCT--ATTTATAAGTTCATA 697
|||||||||||||||||||||||||||||| ||||||| | || | ||| | |||| ||
Sbjct 674 ACCGTCTGTGGCCGTGACTAAACACGCAAGTCAAAGATCAACTCCACTTA-A-GTTCTTA 731
Query 698 GCTGTGAAACCTGACCTGTTTCGTAGCCACT-G-CA-A-T----T-TTGGATTCTGGCGA 748
||| ||||||||||| |||||| |||||||| | | | | | ||||||| ||||||
Sbjct 732 GCTTTGAAACCTGACTTGTTTCATAGCCACTCGGCCCACTCCAATCTTGGATTTTGGCGA 791
Query 749 CACCTCATCTACTCGTGTAT 768
| | |||||||||| |||||
Sbjct 792 CGCTTCATCTACTCTTGTAT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71495389865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5