BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04740.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487252 jgi|Araly1|487252|fgenesh2_kg.6__386__AT5G04740.1 1845 0.0
> Ahg487252 jgi|Araly1|487252|fgenesh2_kg.6__386__AT5G04740.1
Length=1153
Score = 1845 bits (999), Expect = 0.0
Identities = 1106/1156 (96%), Gaps = 13/1156 (1%)
Strand=Plus/Plus
Query 12 GCCATTTTATAGATTA-AGGTGTTCTCTCTGACTTCGGAGGAGAAAGAAAG-a-aaaaaa 68
||||||||||||| || ||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 1 GCCATTTTATAGA-TATCGGTGTTCTCTCTGACTTCGAAGGAGAAAGAAAGAAGAAAAAA 59
Query 69 aTATTCTTGTTTCAAACTTCAATGGCGTTCTCGAGTTCCATCTTCTCTGTTACTCAGTTT 128
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 60 ATAATCTTGTTTCAAACTTCGATGGCGTTCTCGAGTTCTATCTTCTCTGTTACTCAGTTT 119
Query 129 TCTTCTTCG-TTAGCTTCGCGTCCTTCTTCTGCAATCAGTAGGCAGACTCGTTTTCCCGC 187
||||||||| ||| | ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TCTTCTTCGATTA-CCTCGCGACCTTCTTCTGCGATCAGTAGGCAGACTCGTTTTCCCGC 178
Query 188 TCAAATTGCTTCTCCAGATCTATCGCCTGCTTTGTTCGATGATCGCCGGAAGTTCGTCGG 247
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 179 TCAAATTACTTCTCCAGATCTATCGCCTGCTTTGTTCGATGATCGCCGTAAGTTCTTCGG 238
Query 248 AGGTGTAATGTCTCTCTTGACGAAGAGTATTAAAAACCGTGTATATGCTTCGATTAACAG 307
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 AGGTGTAATGTCTCTCTTGACGAAGAGTATAAAAAACCGTGTATATGCTTCGATTAACAG 298
Query 308 CATTGATTCGGCCGCTACTCCATCGTATCCGAAATCGGAAGACGATGACGACGTTGTTCC 367
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 299 CATTGATTCGGCCGCTACTCCATCTTATCCGAAATCGGAAGACGATGACGATGTTGTTCC 358
Query 368 AATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAG 418
Query 428 TTTTGGAAATCGTCTTGGGGCTCTTATTGACACAATGCGGGCGCTGAAAGATTTGGGATT 487
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 419 TTTTGGAAATCGTCTTGGGGCTCTCATTGACACAATGAGGGCGCTGAAAGATTTGGGATT 478
Query 488 GGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTAT 547
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 GGATGTAATAAAAGGAACTGTCTCAACTGAAGGAGATATTAAGCAGACCAAATTTTCTAT 538
Query 548 AACGAAACGAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT 607
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 AACAAAACGAGACACTGGTCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGTTT 598
Query 608 AACAATCATCAACAATCTCTTGAAATACCATCCGGAATGCAGTGAGCAACTTGCAATGGG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AACAATCATCAACAATCTCTTGAAATACCATCCGGAATGCAGTGAGCAACTTGCAATGGG 658
Query 668 TGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGATTGATGTCGATATCGCAACTCATAT 727
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 TGAGACTTTTGGAATAAAGGCTCCAGAAAAGAAGATTGATGTCGATATCGCAACTCATAT 718
Query 728 ACATGTGAAAGAAGATGGACCAAAGAGGAGCCTGCTTGTCATAGAGACAGCGGACAGGCC 787
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAATGTGAAAGAAGATGGACCAAAGAGGAGCCTGCTTGTCATAGAGACAGCGGACAGGCC 778
Query 788 AGGTCTTGTCGTAGAGATGATCAAAGTGATGGCTGATGTCAACATAGACGTGGAATCCGC 847
||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 779 AGGTCTTGTCGTAGAGATGATCAAAGTGATGGCTGATATCAACGTAGACGTGGAGTCTGC 838
Query 848 AGAGATAGATACAGAGGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCA 907
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 AGAGATAGACACAGAGGGACTGGTTGCGAAAGATAAGTTTCACGTAAGCTACCAAGGGCA 898
Query 908 AGCTCTAAACAGATCTTTGTCACAGGTTTTGGTGAACTGTCTGCGTTACTTCCTGAGAAG 967
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGCACTAAACAGATCTTTGTCACAGGTTTTGGTGAACTGTCTGCGTTACTTCCTGAGAAG 958
Query 968 GCCTGAAACTGACATTGACAGCTACTAAATGAGCTTTTGTTTGCTCTAAAACAAAACTGC 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCCTGAAACTGACATTGACAGCTACTAAATGAGCTTTTGTTTGCTCTAAAACAAAACTGG 1018
Query 1028 TCTTTATCCTTTAAAGCAA--TCAT--ATCTGTGCTTGCGAAACTTTCA-GACTTCTGTA 1082
| ||||||||||||||||| |||| ||||||||| ||||||||||| | |||||||
Sbjct 1019 TTTTTATCCTTTAAAGCAAAATCATGTATCTGTGCTA-CGAAACTTTCAAGTCTTCTGTT 1077
Query 1083 TGGAAGATTATGTGG-AAATTCGTGATACTATAATTGAACCACTGTGGCTAAAAAATAAA 1141
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TAGAAGATTATGTGGGAAATTCGTGATACTATAATTGAACCACTGTGGCTAAAAAATAAA 1137
Query 1142 TGGGTTCTTGACACTT 1157
||||||||||||||||
Sbjct 1138 TGGGTTCTTGACACTT 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5