BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G04750.1

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487253 jgi|Araly1|487253|fgenesh2_kg.6__387__AT5G04750.1          597    3e-170


> Ahg487253 jgi|Araly1|487253|fgenesh2_kg.6__387__AT5G04750.1
Length=563

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 492/568 (87%), Gaps = 34/568 (6%)
 Strand=Plus/Plus

Query  38   ATCTCACTGATT--AGC-AAGATGTCGTCGGCTCGTTCTGCGATCACAAAGCTAAAGCTG  94
            ||||||||||||  ||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct  22   ATCTCACTGATTAGAGCAAAGATGTCGTTGGCTCGTTCTGCGATCACAAAGCTAAGGCTG  81

Query  95   GCTCGATCCTT-TGGGGAGAGGCAGATTGGTGCATCGCGTTCGGTGGTATCGACTCGAGG  153
            ||||||||| | |||| |||  |||||||| |||||||||||||||| ||||||||||||
Sbjct  82   GCTCGATCCCTGTGGG-AGACTCAGATTGGAGCATCGCGTTCGGTGGAATCGACTCGAGG  140

Query  154  ACCGGCGATTCGGTACTTCAGTGACGATAAAGGTCGTGTGCTCAGCGAAGAGGAACGCGC  213
            | ||||||||||||  ||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct  141  ATCGGCGATTCGGTGTTTCAGCGACGACAAAGGTCGTGTGCTCAGCGAAGAGGAACACGC  200

Query  214  GAAAGAGAGCATGTATATCCAGAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACT  273
            ||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct  201  GAAAGAGAGCATGTACATCAAGAAAATGGAGAAGGAGATACTGGAGAAGAAGAAGAAACT  260

Query  274  CGAGCAAGATAAGCTAGATGGTGAGAAAGGAAGTGCCAACAAGAAACCTGA-GACAAACA  332
             ||| || |||||| ||||  |||||||||||||||| ||||||||||||| | ||| ||
Sbjct  261  AGAGAAACATAAGCCAGATAATGAGAAAGGAAGTGCCGACAAGAAACCTGATG-CAAGCA  319

Query  333  AGCCATGAGTTTATCACTCACAGTATACAGAATCCGGTCATAAGGCAAGCAGTAGTGAAA  392
            |||||||||||   || ||||  | |||||| || |||||||||||||||||| ||||||
Sbjct  320  AGCCATGAGTT---CA-TCAC--T-TACAGA-TCGGGTCATAAGGCAAGCAGTTGTGAAA  371

Query  393  AACAATAATGCCTTT-GACCTATGTTC-TCTCTTGGTATGAGAGATCTTGTACTTGTACA  450
            || |||||||||||| ||||| ||| | |||||||||||||||  | |||||||| | | 
Sbjct  372  AATAATAATGCCTTTTGACCTTTGTCCCTCTCTTGGTATGAGAT-T-TTGTACTT-T-CT  427

Query  451  GAGATCTTTAACCTTCTGAtgtgtgtgtttgtgtgttgtAAGAAATCAAGTTTAAAATAA  510
            ||  | | |    || || ||||| |||   | |||   |||||||||||||||||||||
Sbjct  428  GA--TGTGTG---TT-TG-TGTGT-TGTAACT-TGT---AAGAAATCAAGTTTAAAATAA  475

Query  511  TCGAGAAAAACAA-CCATATGCATTGATTCAAAATACCAAAATGGTTACCAAACATATTT  569
            |||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  476  TCGAGAGAAACCCTCCATATGCATTGATTCAAAATACCAAAATGGTTACCAAACATATTT  535

Query  570  GTGTTTACAAAAAGCTTCCCTATACATT  597
            ||||||||||||||||| ||||||||||
Sbjct  536  GTGTTTACAAAAAGCTTTCCTATACATT  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21901308086


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5