BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04760.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939877 jgi|Araly1|939877|scaffold_600421.1 941 0.0
Ahg487253 jgi|Araly1|487253|fgenesh2_kg.6__387__AT5G04750.1 137 1e-31
> Ahg939877 jgi|Araly1|939877|scaffold_600421.1
Length=682
Score = 941 bits (509), Expect = 0.0
Identities = 612/660 (93%), Gaps = 14/660 (2%)
Strand=Plus/Plus
Query 255 GATTATGGCGTCAAGTCAGTGGACGAGGTCGGAGGATAAGATGTTTGAGCAAGCTTTGGT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GATTATGGCGTCAAGTCAGTGGACGAGGTCGGAGGATAAGATGTTTGAGCAAGCTTTGGT 76
Query 315 TCTTTTTCCTGAAGGATCTCCTAATCGGTGGGAGAGAATCGCTGATCAGCTTCATAAATC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCTTTTTCCTGAAGGATCTCCTAATCGGTGGGAGAGAATCGCTGATCAGCTTCATAAATC 136
Query 375 TGCTGGTGAAGTTAGGGAGCATTACGAGGTC-TTGGTTCATGATGTTTTCGAGATTGATT 433
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 137 TGCTGGTGAAGTTAGGGAGCATTACGAGG-CGTTGGTTCATGATGTTTTCGAGATTGATT 195
Query 434 CTGGTCGAGTTGATGTCCCTGATTACATGGATGACTCGGCGGCTGCGGCGGCGGGTTGGG 493
||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 196 CTGGTCGAGTTGATGTCCCCGATTACATGGATGA--------CT-CGGCGGCGGGTTGGG 246
Query 494 ATTCCGCTGGTCAGATCTCTTTTGGGTCTAAACATGGCGAGAGTGAACGCAAAAGAGGAA 553
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 247 ATTCGGCTGGTCAGATCTCGTTTGGGTCTAAACATGGTGAGAGTGAACGCAAAAGAGGAA 306
Query 554 CTCCTTGGACAGAGAACGAACACAAATTGTTTCTGATCGGATTAAAGAGATATGGTAAGG 613
|||||||||| |||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 307 CTCCTTGGACGGAGAACGAACACAAATTGTTTCTGATTGGGTTGAAGAGATATGGTAAAG 366
Query 614 GAGATTGGAGGAGTATCTCGAGAAACGTTGTGGTGACGAGGACACCGACGCAAGTCGCGA 673
|||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| |
Sbjct 367 GAGATTGGAGGAGTATCTCGAGGAACGTGGTTGTGACGAGGACGCCGACGCAGGTCGCTA 426
Query 674 GTCACGCTCAGAAGTATTTTCTGAGACAGAACTCGGTGAAGAAGGAGAGGAAAAGGTCGA 733
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GTCACGCACAGAAGTATTTTCTGAGACAGAACTCGGTGAAGAAGGAGAGGAAAAGGTCGA 486
Query 734 GCATCCATGATATAACTACGGTTGATGCTACTTTGGCTATGCCTGGGTCTAACATGGACT 793
||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 487 GCATCCATGATATCACTACGGTTGATACTACTTTAGCTATGCCTGGGTCTACCATGGACT 546
Query 794 GGACTGGCCAACACGGGAGTCCTGTTCAGGCGCCGCAGCAGCAACAGATTATGTCTGAGT 853
||||||| || || | ||||||||||||||| | | |||||||||||||||||||||||
Sbjct 547 GGACTGGACAGCATGAGAGTCCTGTTCAGGCACAACCGCAGCAACAGATTATGTCTGAGT 606
Query 854 TCGGTCAGCAATTGA--A-TCCTGGTCATTTCGAGGATTTTGGGTTTCGGATGTGATGAA 910
| |||||||| |||| | |||||||||||| |||||||| || |||||||||||| |||
Sbjct 607 TTGGTCAGCAGTTGACTACTCCTGGTCATTTTGAGGATTTCGGTTTTCGGATGTGAAGAA 666
> Ahg487253 jgi|Araly1|487253|fgenesh2_kg.6__387__AT5G04750.1
Length=563
Score = 137 bits (74), Expect = 1e-31
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 1040 AATGTATAGGGAAGCTTTTTGTAAACACAAATATGTTTGGTAACCATTTTGGTATTTTGA 1099
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AATGTATAGGAAAGCTTTTTGTAAACACAAATATGTTTGGTAACCATTTTGGTATTTTGA 504
Query 1100 ATCAATGCATATGGTTGTTTT-TCTCGATT 1128
|||||||||||||| | ||| ||||||||
Sbjct 503 ATCAATGCATATGGAGGGTTTCTCTCGATT 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5