BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04780.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939879 jgi|Araly1|939879|scaffold_600423.1 2926 0.0
> Ahg939879 jgi|Araly1|939879|scaffold_600423.1
Length=1959
Score = 2926 bits (1584), Expect = 0.0
Identities = 1811/1920 (94%), Gaps = 18/1920 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTCTCCTTCGCTGCCAAGGATGAACATTCTTGGTTTCACGGTGAACTTCTTGATC 60
|||||||| | |||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 26 ATGTTGTCGCTTTCGCTGCCAAGTAAGAACATTCTTGGTTTCACGGCGAACTTCTTGATC 85
Query 61 CGATGCAAAG-TCTTACCCAGAAGAAGCAATACGAGTTCTCTCTCCCGAAACATCTCCGT 119
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CGATGC-AAGATCTTACCCAGAAGAAGCAATACGAGTTCTCTCTCCCGAAACATCTCCGT 144
Query 120 ACTCGCCAGTTATGATCAGGAGGAAGTATCACCGGGACGATATAGCAATGAGTTTTCGAA 179
| ||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||| ||
Sbjct 145 ATTCGCCAGTTATGAGCAGGAGGAATTATCACCGGGACGATATAGCGATGAG-TTT--AA 201
Query 180 --TCG-T-AA-C-T-TG-GTGCA-CGAAATTTTACAGCTTTGTGCTAGAAACGGAGCTGT 230
| | | || | | || | | ||||||||| ||||||||||||||||||||||||||
Sbjct 202 TGTGGTTCAAGCTTCTGACTTTATCGAAATTTTGCAGCTTTGTGCTAGAAACGGAGCTGT 261
Query 231 TATGGAAGCAAAAGCTTGCCATGGGAAGATTATTCGTATTGATTTGGAGGGAGATGTTAC 290
||||||||||||||||||||||||||| ||||| ||||| || ||| |||||||||| ||
Sbjct 262 TATGGAAGCAAAAGCTTGCCATGGGAAAATTATGCGTATGGAGTTGCAGGGAGATGTCAC 321
Query 291 TCTGTTGAATGTTCTTATTAATGCTTATTCCAAGTGTGGTTTTGTGGAGCTTGCCCGCCA 350
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 TCTGTCAAATGTTCTTATTAATGCTTATTCCAAGTGTGGTTTTGTGGAGCTTGCTCGCCA 381
Query 351 AGTGTTTGATGGAATGCTTGAGAGAAGCTTGGTTTCTTGGAACACCATGATTGGTTTGTA 410
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 382 AGTGTTTGATGGAATGCTTGAAAGAAGCTTGGTTTCTTGGAACACCATGATTGGTTTGTA 441
Query 411 TACACGGAATAGAATGGAGTCAGAAGCATTGGATATTTTCTT-GGAGATGCGAAACGAAG 469
||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 442 TACACGGAACAGAATGGAGTCAGAAGCATTGGATATTTT-TTGGGAGATGAGAAACGAAG 500
Query 470 GGTTTAAGTTTAGTGAATTCACTATATCGAGTGTTCTTTCTGCTTGTGGGGTAAATTGTG 529
||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 501 GGTTTAAGTTTAGCGAATTCACGATATCGAGTGTTCTTTCTGCTTGTGGGGCAAATTGTG 560
Query 530 ATGCCTTGGAATGCAAAAAATTGCATTGTTTGTCAGTGAAGACATGTATTGACTTGAACT 589
||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 561 ATGCCTTGGAATGCAAAAAATTGCATTCTTTGTCAGTTAAGACATGTCTTGACTTGAACT 620
Query 590 TGTATGTTGGTACTGCTTTGCTTGATCTTTACGCAAAATGTGGGATGATCAAGGATGCAG 649
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 621 TGTATGTTGGTACTGCTTTGCTTGATCTTTACGCAAAATGTGGCATGATCAACGATGCAG 680
Query 650 TGCAGGTTTTCGAGTCTATGCAGGACAAGAGTTCAGTTACATGGAGTTCTATGGTGGCAG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 681 TGCAGGTTTTCGAGTCTATGCAGGACAAGAGTTCAGTTACATGGAGTTCTATGGTAGCAG 740
Query 710 GTTATGTTCAGAACAAGAATTATGAAGAGGCACTCCTTCTTTACCGTCGAGCTCAGAGAA 769
|||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 741 GTTATGTTCAGAGCAAAAACTATGAAGAGGCTCTCCTTCTTTACCGTCGAGCTCAAAGAA 800
Query 770 TGAGTTTAGAGCAGAATCAGTTCACATTATCTTCAGTAATTTGCGCTTGTTCAAATCTGG 829
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 801 TGAGTTTAGAGCAGAATCAGTTTACATTATCTTCAGTAATTTGCGCTTGTTCAAATCTGG 860
Query 830 CAGCTTTAATAGAAGGGAAACAGATGCATGCTGTTATATGTAAGTCCGGGTTTGGTTCTA 889
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 861 CAGCTTTAATAGAAGGGAAACAGATGCATGCTGTTATACGTAAGTCCGGGTTTGGTTCTA 920
Query 890 ATGTCTTTGTGGCATCCTCTGCAGTAGATATGTATGCTAAATGTGGAAGCTTGAGAGAGT 949
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 921 ATGTCTTTGTGGCATCCTCTGCAGTTGATATGTATGCTAAATGTGGAAGCTTGAGAGAGT 980
Query 950 CTTATATTATTTTCTCGGAAGTGCAAGAGAAGAATCTTGAGCTTTGGAACACGATCATCT 1009
|||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 981 CTTATATTATCTTCTCGGAAGTGAAAGAGAAGAATATTGAGCTTTGGAATACGATCATCT 1040
Query 1010 CGGGGTTTGCAAAGCATGCTCGTCCTAAGGAAGTGATGATCTTGTTTGAGAAAATGCAAC 1069
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1041 CGGGGTTTGCAAAGCATGCTCGTCCTAAGGAAGTGATGATCTTGTTTGAGAAAATGCAGC 1100
Query 1070 AAGATGGAATGCACCCAAATGAGGTTACTTTTAGTTCCTTGTTATCGGTTTGTGGTCACA 1129
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1101 AAGATGGAATGCACCCAAATGAGGTTACTTTTAGTTCCCTGTTATCGGTTTGTGGTCACA 1160
Query 1130 CGGGTTTGGTCGAGGAAGGAAGGAGATTTTTCAAACTCATGAGAACCACTTACGGTCTGT 1189
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1161 CGGGTTTGGTCGAGGAAGGAAGGAGATTTTTCAAACTCATGAGAACCACATACGGTCTGT 1220
Query 1190 CGCCTAATGTGGTTCATTACTCATGTATGGTTGATATTCTTGGTCGTGCTGGTCTATTGT 1249
| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1221 CACCAAATGTGGTTCATTACTCCTGTATGGTTGATATTCTTGGTCGTGCTGGCCTATTGT 1280
Query 1250 CTGAAGCGTACGAGTTGATAAAGTCTATTCCTTTCGATCCTACAGCTTCCATTTGGGGTT 1309
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1281 CTGAAGCGTACGAGTTGATAAAGTCTATTCCTTTCGAGCCTACAGCTTCCATTTGGGGTT 1340
Query 1310 CTCTTCTAGCTTCTTGTCGAGTCTACAAAAATCTCGAGCTGGCAGAAGTTGCAGCCGAGA 1369
||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||| | |
Sbjct 1341 CTCTTCTTGCTTCATGTCGAGTTTACAAAAACCTCGAGCTGGCTGAAGTTGCAGCCAAAA 1400
Query 1370 AACTATTCGAATTAGAACCAGAAAACGCCGGTAATCACGTCTTACTATCCAATATATACG 1429
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1401 AATTATTCGAATTAGAACCAGAAAATGCCGGTAATCACGTCTTACTATCCAATATATATG 1460
Query 1430 CGGCAAACAAACAGTGGGAGGAAATCGCCAAGTCAAGGAAGCTTTTAAGGGACTGCGACG 1489
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1461 CGGCAAACAAACAGTGGGAGGAAATCGCCAAATCAAGGAAGCTTCTAAGGGACTGCGACG 1520
Query 1490 TGAAGAAAGTAAGAGGAAAAAGTTGGATTGACATTAAAGACAAGGTCCATACTTTCAGTG 1549
|||| |||||||||||| ||||||||||||||||||| ||||||||||| | |||| |||
Sbjct 1521 TGAAAAAAGTAAGAGGACAAAGTTGGATTGACATTAAGGACAAGGTCCACATTTTCCGTG 1580
Query 1550 TTGGAGAGAGCGGTCATCCGAGAATCCGTGAGATCTGTTCGACGCTAGACAATCTAGTAA 1609
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1581 TTGGAGAAAGCAGTCATCCGAGAATCCGTGAGATCTGTTCGATGCTAGACAATCTAGTTA 1640
Query 1610 TCAAATTCAGAAAGTTTGGATATAAACCAAGCGTAGAACACGAGCTGCACGATGTGGAGA 1669
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 TCGAATTGAGAAAGTTTGGATATAAACCAAGCGTAGAACACGAGCTGCACGATGTGGAGA 1700
Query 1670 TAGGAAAGAAAGAGGAGCTTTTGATGCAGCATAGTGAGAAGCTGGCATTGGTTTTTGGGT 1729
|||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 1701 TAGGAAAGAAAGAGAAGCTTTTGATGCAACATAGTGAGAAACTGGCTTTGGTTTTTGG-T 1759
Query 1730 -TAATGTGTTTACCAGAGAGTTCTCCAGTGAGGATTATGAAGAATCTGAGGATTTGTGTG 1788
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 1760 CTAATGTGTTTACCAGAGGGTTCTACAGTGAGGATCATGAAGAATCTGAGGATTTGTGTT 1819
Query 1789 GATTGCCATGAGTTCATGAAGGCTGCATCAATGGCTACAAGAAGATTTATCATTGTTAGA 1848
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1820 GATTGCCATGAGTTTATGAAGGCTGCTTCAATGGCTACAAGAAGATTTATCATTGTTAGA 1879
Query 1849 GATGTTAATAGGTTTCACCATTTCAGTGATGGTCATTGTTCTTGTGGCGATTTTTGGTGA 1908
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1880 GATGCTAATAGGTTTCACCATTTCAGTGATGGTCATTGTTCTTGTGGCGAATTTTGGTGA 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5