BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04820.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939883 jgi|Araly1|939883|scaffold_600427.1 1225 0.0
Ahg912598 jgi|Araly1|912598|Al_scaffold_0001_2852 257 1e-67
> Ahg939883 jgi|Araly1|939883|scaffold_600427.1
Length=811
Score = 1225 bits (663), Expect = 0.0
Identities = 768/816 (94%), Gaps = 17/816 (2%)
Strand=Plus/Plus
Query 59 TGGTATCAATGGGGAAGAAGAAGATGAAACTCTCTTCTCTGTTCAAAGGCGGAGCCGGAG 118
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 13 TGGTTTCAATGGGGAAGAAGAAGATGAAGCTCTCTTCTCTGTTCAAAGGCGGAGCCGGAG 72
Query 119 GATTACTAGCGGTTCCTCTCTGTTACAATGCCAAAACTCTTTCGTTCCGAGTCGGCGACG 178
||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 73 GATTACTGGCGGTTCCTCTCTGTTACAATGCCAAAACTCTCTCCTTCCGTGTCGGCGACG 132
Query 179 ACATGATCAAGACGGTGAACTCTGTTTTCTTCGACCACCACCACAACAACAACAATGGAG 238
||||||||||||||||||||||||||||||||||||| || || | ||||||||||||
Sbjct 133 ACATGATCAAGACGGTGAACTCTGTTTTCTTCGACCA-CA--AC--C-ACAACAATGGAG 186
Query 239 GAGATTTGTTGGAAGCGGAGACGCCTGAGTCATGGTTTACTAACTCGTCCGAGACAGCGA 298
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 187 GAGATTTGTTGGAAGCGGAAACGCCTGAGTCATGGTTTACTAACTCGTCTGAGACAGCGA 246
Query 299 GTCACTCAACCGAGTCGGATCAAGACCTTGACGCTGAGTCCTTAGAGATGGTGGTTCGTG 358
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 247 GTCACTCAACCGAGTCGGATCAAGACCTTGACGCTGAATCGTTGGAGATGGTGGTTCGTG 306
Query 359 GCGTTGTTAGATCGGAGCGGTTATTCTTCGATCCAGGAGTTACGAGTTCGATTCTGGAAG 418
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 307 GAGTTGTTAGATCGGAGCGGTTGTTCTTCGATCCAGGAGTTACGAGTTCGATTTTGGAAG 366
Query 419 AGATTGAAGAGAAATCGAAATCGGATTTGAAATCGAAGGAAACGGTTGCGGTGGGAGAAG 478
||||||| || ||||||||||| |||||||||||| || ||||||| ||||||||
Sbjct 367 AGATTGATGATAAATCGAAATC------GAAATCGAAGGAGACTGTTGCGGCGGGAGAAG 420
Query 479 ATCGGAGTACGCCGATTGAGGAGATTAGTGTCGCGGTGGCGATGGAATCCGAGGATCCGT 538
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 421 ATCGGGGTACGCCGATTGAGGAGATTAGCGTCGCGGTGGCGATGGAATCGGAGGATCCGT 480
Query 539 ACGGTGATTTCCGGCGATCGATGGAGGAGATGGTGACGAGTCACGGTGAGTTGGCTAAAG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 ACGGTGATTTCCGGCGATCGATGGAGGAGATGGTGACGAGTCACGGTGAGTTAGCTAAAG 540
Query 599 ATTGGGAGAGCTTGGAATCGATGCTCGCTTGGTATTTGAGGATGAATGGGAGGAAGAGTC 658
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 ATTGGGAGAGTTTGGAATCGATGCTCGCTTGGTACTTGAGGATGAATGGGAGGAAGAGTC 600
Query 659 ACGGCGTTATCGTCAGTGCTTTTGTTGATCTTCTCTCTGGACTCTCTGATTCCGGCGCCG 718
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGGCGTAATCGTCAGTGCTTTTGTTGATCTTCTCTCTGGACTCTCTGATTCCGGCGCCG 660
Query 719 GAATAACGTCGGCTTCGGTATCGGATTCGGCTCGTTATTCAACCGCCGTTTCGTCTTTGC 778
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAATAGCGTCGGCGTCGGTATCGGATTCGGCTCGTTATTCAACCGCCGTTTCGTCTTTGC 720
Query 779 CGTCGTCGCCGGTTTATTCGTTATCTCAAGGTCAGACGGAGATTCAAGAGGAAGAGAGAC 838
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 CGTCGTCGCCGGTATATTCGTTATCTCAAGGTCAGACGGAGATTGAAGAGGAAGAGAGAC 780
Query 839 GGAGCTGTTaaaaataaaaaaaGGCTTAAGATTCGG 874
|||||||||| ||||||| | ||||||||||||
Sbjct 781 GGAGCTGTTAGAAATAAA----G-CTTAAGATTCGG 811
> Ahg912598 jgi|Araly1|912598|Al_scaffold_0001_2852
Length=234
Score = 257 bits (139), Expect = 1e-67
Identities = 209/241 (87%), Gaps = 12/241 (5%)
Strand=Plus/Plus
Query 132 TCC-TCTCTGTTACAATGCCAAAACTCTTTCGTTCCGAGTCGGCGACGACATGATCAAGA 190
||| |||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||
Sbjct 2 TCCTTCTCTGTTACAACGCCAAAACTCTTTCATTCCGTGTCGGTGATGACATGATTAAGA 61
Query 191 CGGTGAACTCTGTTTTCTTCGACCACCACCACAACAACAACAATGGAGGAGATTTGTTGG 250
||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 62 CGGTGAACTCTGTTTTCTTTG------ACCACAACAACAACAATGGAGGAGATATGTTGG 115
Query 251 AAGCGGA-GACGCCTGAGTCATGGTTTACTAACTCGTCCGAGACAGCGAGTCACTCAACC 309
||| ||| || || |||| | || ||||||||||||||||||||| ||||||||||||||
Sbjct 116 AAGTGGAAGA-GCTTGAGCCTTG-TTTACTAACTCGTCCGAGACAACGAGTCACTCAACC 173
Query 310 GAGTCGGATCAAGACCTTGACGCTGAGTCCTTAGAGATGGTGGTTC--GTGGCGTTGTTA 367
|||||||||||||||| ||| ||||| || || ||||||||||||| |||| ||| |||
Sbjct 174 GAGTCGGATCAAGACCCTGATGCTGAATCGTTGGAGATGGTGGTTCTCGTGGAGTTTTTA 233
Query 368 G 368
|
Sbjct 234 G 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5