BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04830.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487267 jgi|Araly1|487267|fgenesh2_kg.6__401__AT5G04830.2 972 0.0
> Ahg487267 jgi|Araly1|487267|fgenesh2_kg.6__401__AT5G04830.2
Length=921
Score = 972 bits (526), Expect = 0.0
Identities = 652/710 (92%), Gaps = 20/710 (3%)
Strand=Plus/Plus
Query 170 CAGCGATGGATCCAG-CGCGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAA- 227
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CAGCGATGGATCC-GTCACGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAAT 222
Query 228 CAAGCGATTTGCTGATAAAATCATGCCTCATCTTCTCAACTTGTACGGGTCTAGTGCAAA 287
| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 223 C-AGCGATTTGCTGATAATATCATGCCTCATCTTCTCAACTTGTACGGGTCTTGTGCAAA 281
Query 288 AGCCAACGATTTTGACATGTATGCACCAAATGCTTCATTTGAAGACCCTTTGACGCATGC 347
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 282 AGCCAACGACTTTGACATGTATGCACCAAATGCCTCGTTTGAAGACCCTTTGACGCATGC 341
Query 348 TCAGGGAGTGAAGCAGATCAAATCAGCATTTTATTCACTCCCTAAGGTGTTTGGTGAGTC 407
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 342 TCAGGGAGTGAAGCAAATCAAATCAGCATTTTATTCACTCGCTAAGGTGTTTGGTGAGTC 401
Query 408 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAACCTCGCCGGGGAAGAAAGAGATACT 467
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 402 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAATCTCGCCTGGGAAGAAAGAGATACT 461
Query 468 AATTGACAACAAACAACACTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 527
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AATTGACAACAAACAACATTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 521
Query 528 TAAGCTCTATGTCGAGGACGGGAAGATCGTTCGACATGAAGACTGGTGGGACAAGAAACC 587
|| |||||||||||| |||||||||| || || || |||||||||||||||||||||||
Sbjct 522 CAAACTCTATGTCGAGAACGGGAAGATTGTCCGTCACGAAGACTGGTGGGACAAGAAACC 581
Query 588 TCTGAGGAACAGAGACACGGTTAGCTTTCCATTAGTCGGACGGGTAATGGAGATGGGTCG 647
||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 582 TCTGAGGAACAGAGACACGGTTAGCTTCCCGTTGGTCGGGCGGGTAATGGAGATGGGTCG 641
Query 648 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCCCA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 642 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCACA 701
Query 708 ATGAACAAATGGAAA-AT--A-CAAAACACACATCATGTTATAGTGT-TCAG-TTTCTTC 761
|||| |||| ||||| | | |||||||||| ||| || ||||| | || ||||| |
Sbjct 702 ATGAGCAAA-GGAAATACGCAACAAAACACACCGCATATTCTAGTGCCT-AGATTTCT-C 758
Query 762 AAAACACTACTTGAATTTAAGAAACTCCTTTAATC-GATTTGGTTTCGAATTTAGTTTAA 820
|||||| ||||||||||| || |||||||| |||| | ||||||||||||||||||||||
Sbjct 759 AAAACAGTACTTGAATTTGAGGAACTCCTTAAATCCG-TTTGGTTTCGAATTTAGTTTAA 817
Query 821 AAATATGTAATACAGTATGTTAATCGTCTGTTGGTTTTTAGTCTGGTACG 870
|||| ||||||| | ||||||| || ||||| |||||||||||||||
Sbjct 818 AAATCTGTAATA---T--GTTAATCTTCAGTTGGATTTTAGTCTGGTACG 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5