BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04840.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487268 jgi|Araly1|487268|fgenesh2_kg.6__402__AT5G04840.1 1507 0.0
> Ahg487268 jgi|Araly1|487268|fgenesh2_kg.6__402__AT5G04840.1
Length=1118
Score = 1507 bits (816), Expect = 0.0
Identities = 943/1001 (94%), Gaps = 22/1001 (2%)
Strand=Plus/Plus
Query 211 AAATTCGAATCATGTCAAGGCCTGCTCCGCTTCCACCTCGTTGCCCGATTCCAAAGAAAC 270
||||| ||||||||||||||||||||| |||||| ||||||||||| || ||||||||||
Sbjct 132 AAATT-GAATCATGTCAAGGCCTGCTCAGCTTCCTCCTCGTTGCCCCATCCCAAAGAAAC 190
Query 271 TTTCTTTGAGTCCAGTTGCAGATACATTCTACTCTTCTTCCTCACCCATTGAATCATACA 330
| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 191 TGTCTTTGAGTCCGGTTGCAGATACATTCTATTCTTCTTCCTCTCCCATTGAATCATACA 250
Query 331 TTGGTCAATACAAGTCTTCTACTCAAGATTCCAGGCTCGAAGATCAACCTGCTTGGCTTG 390
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 251 TTGGTCAATACAAGTCTTCTACTCAAGATTCCAGGCTCGAGGATCAACCTGCTTGGCTTG 310
Query 391 ATGAGTTGCTCTGTGACAAAACTGATGGGTTGCTCACTAGAGGAGGTCCTCTGCGCCGCT 450
|||||||||||||||| ||||| |||||| |||||||| ||||||||||| |||||||||
Sbjct 311 ATGAGTTGCTCTGTGAGAAAACAGATGGGATGCTCACTGGAGGAGGTCCTTTGCGCCGCT 370
Query 451 CAGCTAGCGACTCAGTTGTGCTTTTGGGAGACATTTCTGCTAC-TTTTTCTGGTTTTGAT 509
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct 371 CAGCTAGCGACTCAGTTGTGCTTTTGGGAGACATCTCTGCT-CATTTTTCTGGTTTTAAT 429
Query 510 CAAAGTGAGGATGAAGAAAGTTTGAGTTCTGAAGCTTGTGGGGACTTGGAGTCTGCTTGT 569
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 CAAAGTGAAGATGAAGAAAGTTTGAGTTCTGAAGCTTGTGGGGACTTGGAGTCAGCTTGT 489
Query 570 GTATATGGTCCCAACTCGCCAAGAGCAAAGAACAACTCTAGCTTCTCTAACAACCCTATT 629
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 490 GTATATGGTCCCAACTCGCCGAGAGCAAAGAACAACTCTAGCTTCTCTAACAACCCTATT 549
Query 630 GCTTCTGCCTTTTCGGATTATGGTTCTCAGACACCGCCTCAGAACTTGGATGATACGGTG 689
||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 550 GCTTCTGCCTTTTCGGATTATGG-T-T----------CTCAGAACTTGGATGATACGGTG 597
Query 690 AAAGGGATCAACCGTTCACCTGTTGCTGAAAATGCGTGTGGTTCAATGGGCATACCAAAT 749
|||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 598 AAAGGGATCAACTGTACACCTGTTGCTGAAAATGCCTGTGGTTCAATGGGAATACCAAAT 657
Query 750 GCAAAAAGGAACCCGGGACAGCGTTCAAGGGTTCGTAAGCTCCAGTACATTGCTGAACTT 809
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GCCAAAAGGAACCCGGGACAGCGTTCAAGAGTTCGTAAGCTCCAGTACATTGCTGAACTT 717
Query 810 GAGAGAACAGTAGGCATGTTGCAGACGGTGGAAGCAGATTTATCAGTGAGAGTGGCTTCA 869
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 GAGAGGACGGTAGGCATGTTGCAGACGGTGGAAGCGGATTTATCAGTGAGAGTGGCTTCA 777
Query 870 CTTCTTCAGACACGAGCAACACTGTCCCTGGAGAATAGCCAGTTGAAGCAGCAGATGGCG 929
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTCTACAGACACGTGCAACACTGTCCCTGGAGAATAGCCAGTTGAAGCAGCAGATGGCG 837
Query 930 ATACTAAAGCAGGACAAGCTCATAAGGGAAGGTGAGTATCAGTTACTGAAGAAGGAAGCT 989
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 ATACTAAAGCAGGACAAGCTCATAAGAGAAGGTGAGTATCAGTTACTGAAGAAGGAAGCT 897
Query 990 CAGAGATTGAAATCTGGATTGGGATACTTAGGGAGCACTAACAACAGTAACAGGCTGGTG 1049
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 898 CAGAGATTGAAATCTGGATTGGGATACTTAGGGAGCAATAACAACAATAACAGGCTGGTG 957
Query 1050 AGGTCATATTCTGCTGGTTCAAATGTAGCTCCAAGGACAGCTTCGTCCCACTTGGACTGG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGGTCATATTCTGCTGGTTCAAATGTAGCTCCAAGGACAGCTTCGTCCCACTTGGACTGG 1017
Query 1110 AATTTGCTAGATCTGACCAAACTCAATCTCAACTAAAG---A----CAAAACCCTCCATA 1162
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1018 AATTTGCTAGATCTGACCAAACTCAATCTCAACTAAAGTCTAAAGACAAAACCCTCCATA 1077
Query 1163 AGAATAAGTAGCTTAAGGAATTCAAGAGTTAACAGTTCTAT 1203
||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 1078 AGAATAAGTAGCTTAAGTAATTCAGGAGTTAACAATTCTAT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5