BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04850.2
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325121 jgi|Araly1|325121|fgenesh1_pm.C_scaffold_6000341 845 0.0
Ahg478398 jgi|Araly1|478398|fgenesh2_kg.3__1099__AT3G10640.1 604 3e-172
> Ahg325121 jgi|Araly1|325121|fgenesh1_pm.C_scaffold_6000341
Length=708
Score = 845 bits (457), Expect = 0.0
Identities = 485/499 (97%), Gaps = 0/499 (0%)
Strand=Plus/Plus
Query 88 ATGAAGAGAATCTTTGGAGCGAAGAATAACAAAGAGCCTCCTCCGTCTATTCAAGATGCC 147
||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1 ATGAAGAGAATCTTTGGTGCGAAGAATAACAAAGAGCCTCCACCTTCTATTCAGGATGCC 60
Query 148 TCTGATCGGATCAATAAAAGAGGAGATTCAGTGGAAGAGAAAGTTAAGAGGCTTGATGCT 207
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 TCTGATCGGATCAATAAAAGAGGAGAGTCAGTGGAAGATAAAGTTAAGAGGCTTGATGCT 120
Query 208 GAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCTAGAAGCT 267
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCAAGAAGCT 180
Query 268 ATCAAAGCTCGTGCTATGAGAGTTCTCAAGCAAAAGAAGATGTATGAAGGACAACGTGAC 327
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 ATCAAAGCTCGTGCTATGAGAGTCCTCAAGCAAAAGAAGATGTACGAAGGACAACGTGAC 240
Query 328 ATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAGGCCTTAAA 387
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAAGCCTTAAA 300
Query 388 GATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGCTGAAAGGAATGATG 447
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGTTGAAAGGAATGATG 360
Query 448 AAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGACTTAATGGAT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGACTTAATGGAT 420
Query 508 GAGAGTTCTGAAATTCAAGAGACACTTGGTAGGAGCTACAATGTTCCTGATGACATTGAC 567
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 GAGAGTTCTGAAATTCAAGAGACACTCGGTAGGAGCTATAATGTTCCTGATGACATTGAC 480
Query 568 GAAGATGACCTCCTGGGCG 586
|||||||||||| ||||||
Sbjct 481 GAAGATGACCTCTTGGGCG 499
Score = 350 bits (189), Expect = 2e-95
Identities = 203/210 (97%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 697 GAGCTTGATGCTCTTGAAGCTGACATGGGGAACGAGACTGAAGCAGACGGAGTGCCTTCT 756
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 499 GAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACTGAAGCAGACGGAGTGCCTTCC 558
Query 757 TATCTCCAACCCGATAAGGAACCGGATCTTAATGATGAGCTCAACTTGCCTTCAGCACCA 816
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 559 TATCTCCAACCCGATAAGGAACCGGATCTTAATGATGAACTGAACTTGCCTCCAGCACCA 618
Query 817 ATGGGGCATACAGGAGCTCCACCCGGACGAGCTCAGGCTGAAGATGAATGGGGATTACCA 876
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 619 ATGGGGCATACAGGAGCACCACCCGGACGAGCTCAGGCTGAGGATGAATGGGGATTACCA 678
Query 877 GCGGTACCACGTGCATCACTTCGGGGCTAA 906
||||||||||||||||||||||||||||||
Sbjct 679 GCGGTACCACGTGCATCACTTCGGGGCTAA 708
> Ahg478398 jgi|Araly1|478398|fgenesh2_kg.3__1099__AT3G10640.1
Length=1008
Score = 604 bits (327), Expect = 3e-172
Identities = 451/511 (88%), Gaps = 7/511 (1%)
Strand=Plus/Plus
Query 77 GAAGGAGAAACATGAAGAGAATCTTT-GGAGCGAAGAATAACAAAGAGCCTCCTCCGTCT 135
|||| || || |||| |||| | ||| || |||||||| |||| |||||||||||||||
Sbjct 97 GAAGAAG-AAGATGAGGAGAGT-TTTCGGCGCGAAGAAGAACACAGAGCCTCCTCCGTCC 154
Query 136 ATTCAAGATGCCTCTGATCGGATCAATAAAAGAGGAGATTCAGTGGAAGAGAAAG-TTAA 194
||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||| | ||
Sbjct 155 ATTCAGGATGCCTCTGATCGGATAAATAAAAGAGGAGATTCGGTAGAAGA-TAAGATAAA 213
Query 195 GAGGCTTGATGCTGAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCC 254
|| |||||||| |||||||| |||||| ||||| ||| | |||| ||| |||||||||||
Sbjct 214 GAAGCTTGATGTTGAGCTCTTCAAATATAAAGAACAGCTTAAAAAGACAAGACCTGGTCC 273
Query 255 TGCTCTAGAAGCTATCAAAGCTCGTGCTATGAGAGTTCTCAAGCAAAAGAAGATGTATGA 314
||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 274 TGCTCAAGAAGCTGTCAAAGCTCGTGCTATGAGAGTTCTCAAGCAGAAGAAAATGTATGA 333
Query 315 AGGACAACGTGACATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGC 374
||||||||| ||||||||||||||||| || || || || ||||||||||||||||| ||
Sbjct 334 AGGACAACGCGACATGCTCTATAATCAAACATTCAATCTCGATCAAGTTTCATTTGCCGC 393
Query 375 TGAAGGCCTTAAAGATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGCT 434
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 394 TGAAGGACTCAAAGATGCTCAACAAACTATGACAGCACTAAAATCTGCGAACAAGGATTT 453
Query 435 GAAAGGAATGATGAAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGAT 494
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 454 GAAAGGAATGATGAAAACCGTCAAGATTCAAGATATTGATAATTTGCAAGACGAGATGAT 513
Query 495 GGA-CTTAATGGATGAGAGTTCTGAAATTCAAGAGACACTTGGTAGGAGCTACAATGTTC 553
||| || | |||||| ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 514 GGATCTGA-TGGATGTTAGTTCTGAAATTCAAGAAACACTTGGTAGAAGCTACAATATTC 572
Query 554 CTGATGACATTGACGAAGATGACCTCCTGGG 584
|||||| | |||| |||||||||||| ||||
Sbjct 573 CTGATGGCCTTGATGAAGATGACCTCATGGG 603
Score = 174 bits (94), Expect = 1e-42
Identities = 176/215 (82%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 696 AGAGCTTGATGCTCTTGAAGCTGACATGGGGAACGAGACTGAAGCAGACGGAGTGCCTTC 755
|||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||
Sbjct 604 AGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCCTTC 663
Query 756 TTATCTCCAACCCGATA-AGGAACCGGATCTTA--ATGATGAGCTCAACTTGCCTTCAGC 812
|||||||||||| |||| || ||| | || | | || | ||||| ||||||||| ||||
Sbjct 664 TTATCTCCAACCGGATACAGAAACTG-AT-T-ACGATAACGAGCTTAACTTGCCTGCAGC 720
Query 813 ACCAATGGGGCATACA-GGAGCTCCACCCGGACGAGCTCAGGCTGAAGATGAATGGGGAT 871
||||| || || | | ||||| |||| ||| ||| ||||||||| || |||| ||||
Sbjct 721 ACCAACAGGACACA-ATGGAGCGCCACAGGGAAGAGTTCAGGCTGAGGACGAATTTGGAT 779
Query 872 TACCAGCGGTACCACGTGCATCACTTCGGGGCTAA 906
||||||| || ||||| || || || ||||| |||
Sbjct 780 TACCAGCAGTGCCACGAGCTTCTCTCCGGGGATAA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5