BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04860.1
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487270 jgi|Araly1|487270|fgenesh2_kg.6__404__AT5G04860.1 4030 0.0
> Ahg487270 jgi|Araly1|487270|fgenesh2_kg.6__404__AT5G04860.1
Length=2711
Score = 4030 bits (2182), Expect = 0.0
Identities = 2582/2765 (93%), Gaps = 68/2765 (2%)
Strand=Plus/Plus
Query 11 TCCTtctctctactcttttctctc-tctgtctctcACTTTCTTCAAATTTCAAATATTTT 69
||||||||||||||||| |||||| | | || || ||||||||||||||||||||||||
Sbjct 1 TCCTTCTCTCTACTCTTCTCTCTCTTTTCTCACTTTCTTTCTTCAAATTTCAAATATTTT 60
Query 70 GCGTCTGAATCACACCGCGTCCACCAAATCCTCCAT-CTCCATCTCTTAAAATCCGATTC 128
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 61 GCGTCTGAATCACACCGCGTCCACCAAATCCTCCATGC-CCATCTCTTAAAATCCGATTC 119
Query 129 TTTCCTCCGCAAATCTCGATTACTCCAACACCCTTTTTCTCTAAGATTCCAAACCTTTTA 188
|||||||||||||||||||||||||||| |||||||| ||||||||||| | || |
Sbjct 120 TTTCCTCCGCAAATCTCGATTACTCCAATACCCTTTT-CTCTAAGATTC-AG-CC----A 172
Query 189 GGTTTTTTGTTGCAGCCACTTGTGAATTGTATGGTGGTCAAAATGAAACAGATCATGCGT 248
|| || | | | |||| | | | | ||||||||||||||||||||||||||
Sbjct 173 C-TT----GT-G-A---A-TTGT-A-T-G---G-TGGTCAAAATGAAACAGATCATGCGT 214
Query 249 TGGCCACCGTGGCCTCCGCTCTTCGCCGTTAAATTCGACGTGATCGTCGTTGTTCACCAG 308
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 215 TGGCCACCGTGGCCTCCGCTCTTCGCCGTCAAATTCGACGTGATCGTCGTTGTTCACAAG 274
Query 309 ATGGATGGTTTGTTGGATTCCGATGGTGGTGGCGATGATAGTACTGATCAGAGTCAGCGA 368
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 275 ATGGATGGTTTGTTGGATTCCGATTGTGATGGCGATGATAGTACTGATCAGAGTCAGCGA 334
Query 369 GGAGGAGGGACAACAACGAGGAAGAGACCTGTTGTTGAGATCAAATGGAAAGGACCTAAA 428
||||| | | | || | | |||||||||||||||||||||||||||||||||||||||
Sbjct 335 GGAGG-GC--CTATAA-G-G-AAGAGACCTGTTGTTGAGATCAAATGGAAAGGACCTAAA 388
Query 429 TCGGTTACTCTCAAACGCTCCGTCGTACGGAATCTCACCGAAGAAGGTGGATTTCGCGGC 488
||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 389 TCGGTTACTCTTAAACGCTCCGTCGTACGGAATTTCACCGAAGAAGGAGGATTTCGTGGC 448
Query 489 GATGGCGTCGTTGAATGGAACGAAGAGTTTAAGAGGGTTTGCGAATTCTCTGTTTACAAG 548
|| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 449 GACGGCGTCGTTCAATGGAACGAAGAGTTCAAGAGGGTTTGTGAATTCTCTGTTTACAAG 508
Query 549 GAAGGATCGTTTCTTCCTTGGTTCGTTTCTTTAACCGTCTTCAGTGGACTGAATCAAGGA 608
||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 509 GAAGGATCGTTTCTTCCATGGATCGTTTCTTTAACCGTCTTGAGTGGACTGAATCAAGGA 568
Query 609 TCGAAGGAGAAAGTTCGTAGCTTTGGAAAGGCATCACTGAACATTGCAGAATACTTTTCA 668
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 569 TCGAAGGAGAAAGTTCGTAGCTTTGGAAAGGCGTCACTGAACATTGCAGAACACTTTTCA 628
Query 669 TTGATGAAAGAAGATGATGTTCAAGTCAAAGTGCCTCTCAAGGATTGTGACTCATCATCT 728
|||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||
Sbjct 629 TTGATGAAAGAAGATGATGTTCAAGTCAAAGTGCCTCTGACGAATTGTGGCTCATCATCT 688
Query 729 GTGAGAAGTCCACATGTTCATATATCCCTTCAGTTTTCTCCTAAAGAATCGTTGCCTGAA 788
||| |||||||| | |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 689 GTGCGAAGTCCATGTCTTCATATATCACTTCAGTTTTCTCCTAAAGAATCATTGCCTGAA 748
Query 789 AGACAGAGGTCTGCTCTTCCTGTTCTATGGTCTCCTCTTTCCGCAGAGGCTGAGAAAGCT 848
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGACAGAGATCTGCTCTTCCTGTTCTATGGTCTCCTCTTTCCGCAGAGGCTGAGAAAGCT 808
Query 849 GAGTCTGTTGTTAAAGTAGGCCTGAGAAAGATGAAGACCTTCAACAATTGCATGTCTAGT 908
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 809 GAGTCTGTTGTTAAAGTAGGCCTGAGAAAGATGAAAACCTTCAACAGTTGCATGTCTAAT 868
Query 909 ACACAGGCATCGGAAAAGGAGAGTGAGAAAGATGGAAGCAGTGGAAGCGGAAGTGACGGC 968
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 869 ACTCAGGCATCGGAAAAGGAGACTGAGAAAGATGGAAGCAGTGGAAGCGGAAGTGAAGGC 928
Query 969 AAAAGTCCGGAGAGAAATCTTGATTCTGACTCTAGTTATCCTTTTGATACAGATTCTTTA 1028
||||| || ||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 929 AAAAGCCCTGAGAGAAATCTTGATTCTGACTCCACTTATCCTTTTGATACAGATTCTCTA 988
Query 1029 GATGAAGGTGATGCTGCAGATGAATCAGAAGAGAACAAAGAGAATGAAAGTAGCTTAGCT 1088
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 989 GATGAAGGTGATGCTGCGGATGAATTAGAAGAGAACAAAGAGAATGAAAGTAGCTTAGCT 1048
Query 1089 GATCCAGTTAATTACAAAACACTTCGTTCTGCTAATTGGGCTAGAGGCTCATTTCATACT 1148
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1049 GATCCAGTTAATTACAAAACACTTCGATCTGCTAATTGGGCTAGAGGCTCATTTCATACT 1108
Query 1149 GTTACAAACCCCGAAGACGAGGATTTGATATATTACAGTCACCGCAGTCCATTAGCAGAG 1208
| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1109 GATACAAACCCCGAATACGAGGATTTGATATATTACAGCCACCGCAGTCCATTAACAGAG 1168
Query 1209 ACAGGACATTGCAGTGATGAGGTTTCCAATGATGTAGTAAGCTTGGAGCAGGCGAAAGGA 1268
|| ||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1169 ACCGGACATTACGGTGATGAGGTTTCAAATGATGTAGTAAGCTTGGAGCAGGCTAAAGGA 1228
Query 1269 CAAATGTCTAAGAAGAGAATGTTATCTTGGAAGAAGAGAAAACTTAGTTTTAGATCTCCT 1328
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1229 CAAATGTCTAAGAAGAGAATGTTATCTTGGAAGAAGAGAAAACTCAGTTTTAGATCTCCT 1288
Query 1329 AAACAGAAAGGCGAGCCTCTTCTTAAGAAGGATTGTCTTGAAGAAGGAGGTGATGATATC 1388
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1289 AAACAGAAAGGCGAACCTCTTCTTAAAAAGGATTGTCTTGAAGAAGGAGGTGATGATATC 1348
Query 1389 GATTTTGACCGCAGACAACTAAGTTCATCCGATGAGTCTAACTCTGATTGGTATAGGTCT 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 GATTTTGACCGCAGACAACTAAGTTCATCCGATGAGTCTAACTCTGATTGGTATAGGTCT 1408
Query 1449 GATGATGCAATCATGAAACCATTATCCCAGTTTGGAGATGATGATTTCGTTGTTGGTAGC 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 GATGATGCAATCATGAAACCATTATCCCAGTTTGGAGATGATGATTTCGTTGTTGGTAGT 1468
Query 1509 TGGGAGACCAAAGAGATTATAAGCCGTGATGGGCTGATGAAACTCACGGCTCGAGTATTT 1568
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 TGGGAAACCAAAGAAATTATAAGCCGTGATGGGCTGATGAAACTCACGGCTCGAGTATTT 1528
Query 1569 CTCGCATCAATTGATCAGAGAAGCGAGAGAGCTGCTGGAGAAAGCGCCTGCACAGCTCTA 1628
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1529 CTCGCATCAATCGATCAGAGAAGCGAGAGAGCTGCTGGAGAAAGCGCCTGCACAGCCCTA 1588
Query 1629 GTTGCAGTGATGGCACATTGGTTAGGATCCAACAGAGACATAATCCCAACAAGGTCAGAG 1688
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1589 GTTGCAGTGATGGCAAATTGGTTAGGATCCAACCGAGACATAATCCCAACAAGGTCAGAG 1648
Query 1689 TTTGACAGTCTTATCAGAGAAGGATCATCCGAGTGGAGAAATATGTGTGAAAACGAGGAA 1748
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1649 TTTGACAGTCTTATCAGAGAAGGATCATCCGAGTGGAGAAATATGTGCGAAAACGAGGAA 1708
Query 1749 TACCGGGAACGGTTTCCAGACAAACATTTCGATCTCGAGACGGTTCTCCAGGCAAAAGTC 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 TACCGGGAACGGTTTCCAGACAAACATTTCGATCTCGAGACGGTTCTCCAGGCAAAAGTC 1768
Query 1809 AGACCCATCTGTGTAGTCCCTGA-AAGATCATTCATCGGGTTTTTCCATCCAGAGAAATC 1867
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1769 AGACCCATCTGTGTAGTCCCTGAGAA-ATCATTCATCGGGTTTTTCCATCCAGAGAAATC 1827
Query 1868 AGAGGAAGAAGAAGGAAAAGAAGATGCTAGTCTAGATTTTCTCAAAGGTGTAATGTCCTT 1927
|||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1828 AGAGGAAGAAGACG------------CTAGTCTAGATTTTCTCAAAGGTGTAATGTCCTT 1875
Query 1928 TGACAGTATCTGGGAAGAGCTCATGAAACAAGAACCAGAAGAGTCGGCAAGCGAACCTGT 1987
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1876 TGACAGTATCTGGGAAGAGATCATGAAGCAAGAACCAGAAGAGTCGGCAAGTGAACCTGT 1935
Query 1988 GATCTACATTGTAAGCTGGAATGATCATTTCTTTGTACTCCTTGTGAACCACGATGCTTA 2047
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1936 GATCTACATTGTAAGCTGGAATGATCATTTCTTCGTACTCCTCGTGAACCATGATGCTTA 1995
Query 2048 TTACATCATAGACACGCTTGGAGAGAGGCTCTATGAGGGTTGCAACCAAGCGTATGTCTT 2107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 TTACATCATAGACACGCTTGGAGAGAGGCTCTATGAGGGTTGCAACCAAGCGTATGTCTT 2055
Query 2108 GAAATTTGACAAAGATGCAGAGATCAAAAGATTACCATCCGTCATCAAAGACAACAAAGC 2167
|||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 2056 GAAATTTGACAAAGATGCGGAGATCCAAAGATTACCATCTGTCGTCAAAGACAACAAAGC 2115
Query 2168 CGACATGGGAAACCAGAAACAAGGTGGTAAGAACAAGTCTGAGCAACCCgaaagatcaaa 2227
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2116 CGACATGGGAAACCAGAAACAAGGTGGTAAGACCAAGTCTGAGCAACCCGAAAGATCAAA 2175
Query 2228 agaatcagaagaacaagaagaagaagaagTAGTGTGTAGAGGTAAAGAGTCATGTAGAGA 2287
||| ||||| |||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 2176 AGAGTCAGATGAACAAGAAGTAG------TAGTGTGTAGAGGTAAAGAATCATGTAGAGA 2229
Query 2288 GTATATAAAGAGCTTTCTCGCAGCGATTCCAATACAGCAAGTGAAAGCTGATATGAAGAA 2347
|||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct 2230 GTATATAAAGAGCTTTCTGGCCGCGATTCCGATACAGCAAGTTAAAGCTGATATGAAGAA 2289
Query 2348 AGGACTGGTTTCATCTTTGCATCACCGTCTTCAAATAGAGCTTCACTACACGAAACACCT 2407
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2290 AGGACTAGTTTCGTCTTTGCATCACCGTCTTCAAATAGAGCTTCACTACACAAAACACCT 2349
Query 2408 TCATCACCACCAA-CCTAATATGTTTGAATCCTCTGCAACCGAAGTAACTGTGTCAGAAG 2466
|||| |||||||| || ||| || ||||||||| ||||||| ||| ||||||||| ||||
Sbjct 2350 TCATGACCACCAAGCC-AATCTGCTTGAATCCTGTGCAACCAAAGAAACTGTGTCTGAAG 2408
Query 2467 CTGCTGTGTCTGTGACAGTGGCTTGGTCATTGGCGAGCCAATTCAGCAATAGTGGTGGGT 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2409 CTGCTGTGTCTGTGACAGTGGCTTGGTCATTGGCGAGCCAATTCAGCAATAGTGGTGGGT 2468
Query 2527 TTAGTTGCGAAATGGCTGAGCTTTTGGGGGTTAAAGTTTAAGAGAAGTGTATAGAGAAAA 2586
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2469 TTGGTTGCGAAATGGCTGAGCTTTTGGGGGTAAAAGTTTAAGAGAATTGTATAGAGAAAA 2528
Query 2587 GGAGTTTTCCTTCTGTGTGAATTTTGATGTTTATAACTTGATAACCC-CTTTGGTGTTTT 2645
||||||| |||| |||||||||||||||||||||||| |||||||| ||| | ||||||
Sbjct 2529 GGAGTTTCCCTT-TGTGTGAATTTTGATGTTTATAACATGATAACCGTCTT-GCTGTTTT 2586
Query 2646 TCTGGCTAATTTGATGTTCATAATGTCTTCT---GTGGAGATAGACTTTTACTCCTCAC- 2701
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
Sbjct 2587 TCTGGCTAATTTGATGTTCATAATGTCTTCTTCTGTGGAGAGAGACTTTTCCTCCTCTCC 2646
Query 2702 T---C-C-AATAATTTGTATTTAGGAAATTTACCAGAGTTATTATAAGTATTTAATAAAA 2756
| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647 TAGACACCAATCATTTGTATTTAGGAAATTTACCAGAGTTATTATAAGTATTTAATAAAA 2706
Query 2757 TCGGT 2761
|||||
Sbjct 2707 TCGGT 2711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104214910320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5