BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04870.1
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939889 jgi|Araly1|939889|scaffold_600433.1 3166 0.0
Ahg478400 jgi|Araly1|478400|fgenesh2_kg.3__1101__AT3G10660.1 1790 0.0
Ahg905714 jgi|Araly1|905714|Al_scaffold_0003_2842 1279 0.0
> Ahg939889 jgi|Araly1|939889|scaffold_600433.1
Length=1874
Score = 3166 bits (1714), Expect = 0.0
Identities = 1824/1877 (97%), Gaps = 7/1877 (0%)
Strand=Plus/Plus
Query 439 AGAGATTTAAGACAAG-TTAGGGAATGGGTAATACTTGTGTTGGACCAAGCAGAAATGGC 497
||||| |||||| ||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGA-TTAAGAGAAGTTTA--G-ATGGGTAATACTTGTGTTGGACCAAGCAGAAATGGC 56
Query 498 TTCTTGCAATCTGTTTCAGCTGCAATGTGGCGGCCAAGAGATGGAGATGATTCGGCTTCC 557
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TTCTTGCAATCAGTTTCAGCTGCAATGTGGCGGCCAAGAGATGGAGATGATTCGGCTTCC 116
Query 558 ATGAGTAATGGAGATATTGCAAGTGAAGCTGTTTCGGGAGAGCTTCGATCTCGATTATCT 617
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 117 ATGAGTAATGGAGATATTGCAAGTGAAGCTGTTTCAGGAGAGCTTCGATCTCGATTATCT 176
Query 618 GATGAAGTCCAGAATAAACCTCCTGAACAGGTCACAATGCCGAAGCCAGGGACTGACGTC 677
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 177 GATGAAGTCCAGAATAAACCTCCTGAACAGGTCACAATGCCGAAGCCAGGGACTAACATC 236
Query 678 GAGACCAAGGACAGAGAGATTCGAACTGAAAGCAAGCCTGAAACGCTAGAGGAGATAAGC 737
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 237 GAGACCAAGGACAGAGAGATTCGACCTGAAAGCAAGCCTCAAGCGCTAGAGGAGATAAAA 296
Query 738 CTTGAGTCCAAACCAGAGACTAAGCAGGAGACCAAGTCAGAGACCAAGCCGGAGTCAAAA 797
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 297 CTTGAGTCCAAACCAGAGACTAAGCAGGAGACCAAGTCAGAGACCAATCCGGAGACAAAA 356
Query 798 CCTGATCCTCCAGCTAAACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCTGATCCTCCAGCTAAACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGG 416
Query 858 CTTAGGACTGAGTCAGTGTTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTG 917
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTAGGACTGAGTCAGTATTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTG 476
Query 918 GGAAGGAAACTCGGACAAGGGCAATTTGGGACGACTTTTTTATGTGTCGAGAAGACTACG 977
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 477 GGAAGGAAACTCGGACAAGGGCAATTTGGGACGACTTTTCTATGTGTGGAGAAGACTACA 536
Query 978 GGGAAGGAGTTTGCCTGCAAGTCGATTGCTAAGAGGAAGCTATTGACTGATGAGGACGTT 1037
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 537 GGGAAGGAGTTTGCATGCAAGTCGATTGCTAAGAGGAAGCTGTTGACTGATGAGGACGTT 596
Query 1038 GAGGATGTGAGAAGAGAAATTCAGATAATGCATCACTTGGCTGGTCACCCTAATGTCATC 1097
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 GAGGATGTGAGAAGGGAAATTCAGATAATGCATCACTTGGCTGGTCACCCCAATGTCATA 656
Query 1098 TCCATCAAAGGAGCTTATGAGGATGTTGTGGCAGTGCACCTTGTAATGGAGTGTTGTGCA 1157
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 TCCATTAAAGGAGCTTATGAGGATGTTGTGGCGGTGCACCTTGTAATGGAGTGTTGTGCA 716
Query 1158 GGCGGCGAGCTTTTTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCT 1217
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTGGCGAGCTTTTTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCT 776
Query 1218 GAGCTCACTAGAACCATTGTTGGGGTTGTAGAGGCTTGCCATTCTCTTGGTGTTATGCAT 1277
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 GAGCTCACTAGAACAATAGTTGGGGTAGTAGAGGCTTGCCATTCTCTTGGTGTTATGCAT 836
Query 1278 CGAGACCTCAAGCCCGAGAATTTTCTGTTTGTCAGTAAACACGAAGATTCCCTCTTGAAG 1337
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 CGAGACCTCAAGCCCGAGAATTTTCTGTTTGTTAGTAAACACGAAGATTCCCTCTTGAAG 896
Query 1338 ACGATTGATTTTGGACTCTCCATGTTCTTTAAACCAGACGATGTTTTTACAGATGTTGTT 1397
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 897 ACGATTGATTTTGGACTCTCCATGTTCTTTAAGCCAGACGATGTTTTTACAGATGTTGTT 956
Query 1398 GGTAGCCCATATTATGTTGCCCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGAT 1457
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTAGCCCATATTATGTTGCTCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGAT 1016
Query 1458 GTCTGGAGTGCTGGAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTCTGGAGTGCTGGAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCT 1076
Query 1518 GAAACCGAACAAGGTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGAT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAAACCGAACAAGGTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGAT 1136
Query 1578 CCATGGCCAAGTATATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGTCAGGGAT 1637
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCATGGCCAAGCATATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGTCAGGGAT 1196
Query 1638 CCCAAGAAAAGGTTAACTGCCCACCAAGTATTATGTCATCCATGGGTTCAAGTCGACGGT 1697
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 CCCAAGAAAAGGTTAACTGCCCACCAAGTATTATGTCATCCGTGGGTTCAAGTCGACGGC 1256
Query 1698 GTGGCTCCAGACAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAGTTTTCTGCA 1757
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1257 GTGGCTCCAGACAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCA 1316
Query 1758 ATGAACAAGTTCAAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAA 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATGAACAAGTTCAAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAA 1376
Query 1818 ATCGCCGGCTTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACT 1877
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATAGCCGGCCTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACT 1436
Query 1878 TTCGAAGAACTGAAAGCAGGACTAAAACGAGTAGGGGCGAATCTCAAAGAGTCTGAAATT 1937
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1437 TTCGAAGAACTGAAAGCAGGACTGAAACGAGTAGGGGCGAATCTCAAAGAGTCCGAAATT 1496
Query 1938 CTCGACTTGATGCAAGCTGCTGATGTGGACAACAGCGGAACAATAGATTACAAAGAGTTC 1997
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1497 CTCGACTTGATGCAAGCTGCTGATGTGGACAACAGCGGAACAATAGACTATAAAGAGTTC 1556
Query 1998 ATAGCTGCAACATTACATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTTT 2057
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATAGCTGCAACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTTT 1616
Query 2058 ACATACTTTGACAAAGATGGGAGCGGCTATATCACCCCAGACGAGCTTCAACAAGCTTGT 2117
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1617 ACATACTTTGACAAAGATGGGAGCGGCTATATCACCCCGGACGAGCTTCAACAAGCTTGT 1676
Query 2118 GAGGAGTTTGGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGAC 2177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GAGGAGTTTGGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGAC 1736
Query 2178 AATGACGGGCGAATAGACTACAACGAGTTTGTGGCGATGATGCAGAAAGGAAGCATCACA 2237
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1737 AACGACGGGCGAATAGACTACAACGAATTTGTGGCAATGATGCAGAAAGGAAGCATCACA 1796
Query 2238 GGAGGACCTGTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAACTCTAGTTT 2297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 GGAGGACCTGTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAACTCTAGTTT 1856
Query 2298 CTCAGTCTATTTAAAAG 2314
| |||||||| |||||
Sbjct 1857 C--AGTCTATTCAAAAG 1871
> Ahg478400 jgi|Araly1|478400|fgenesh2_kg.3__1101__AT3G10660.1
Length=2089
Score = 1790 bits (969), Expect = 0.0
Identities = 1324/1497 (88%), Gaps = 17/1497 (1%)
Strand=Plus/Plus
Query 814 AACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGGCTTAGGACTGAGTCAG 873
||||| ||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct 452 AACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGAGTCAG 511
Query 874 TGTTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTGGGAAGGAAACTCGGAC 933
||||||||||||| ||||||||||| || || |||||||| |||||||||||||| ||||
Sbjct 512 TGTTGCAGAGGAAAACTGAAAACTTTAAAGAGTTCTATTCATTGGGAAGGAAACTTGGAC 571
Query 934 AAGGGCAATTTGGGACGACTTTTTTATGTGTCGAG-AAGACTACGGGGAAGGAGTTTGCC 992
|||| |||||||||||||| |||||||| | ||| ||| ||||||||| |||| |||
Sbjct 572 AAGGCCAATTTGGGACGACGTTTTTATGCCTTGAGAAAG-GTACGGGGAATGAGTATGCG 630
Query 993 TGCAAGTCGATTGCTAAGAGGAAGCTATTGACTGATGAGGACGTTGAGGATGTGAGAAGA 1052
|||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 631 TGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGACGTTGAAGATGTGAGAAGG 690
Query 1053 GAAATTCAGATAATGCATCACTTGGCTGGTCACCCTAATGTCATCTCCATCAAAGGAGCT 1112
|| ||||||||||||||||||||||||||||| || ||||| || || || ||||| |||
Sbjct 691 GAGATTCAGATAATGCATCACTTGGCTGGTCATCCAAATGTTATATCTATAAAAGGCGCT 750
Query 1113 TATGAGGATGTTGTGGCAGTGCACCTTGTAATGGAG-TGTTGTGCAGGCGGCGAGCTTTT 1171
|||||||||||||| || || |||||||| |||||| || ||| | || |||||||||||
Sbjct 751 TATGAGGATGTTGTTGCGGTACACCTTGTGATGGAGTTG-TGTTCGGGTGGCGAGCTTTT 809
Query 1172 TGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCTGAGCTCACTAGAAC 1231
||| || || |||||||| || || ||||| ||||||||||| |||||||| | |||||
Sbjct 810 TGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTGCGAGAAC 869
Query 1232 CATTGTTGGGGTTGTAGAGGCTTGCCATTCTCTTGGTGTTATGCATCGAGACCTCAAGCC 1291
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 870 CATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCGAGACCTCAAGCC 929
Query 1292 CGAGAATTTTCTGTTTGTCAGTAAACACGAAGATTCCCTCTTGAAGACGATTGATTTTGG 1351
|||||||||||| ||||| |||||| | ||||||||||||||||| ||||| || |||||
Sbjct 930 CGAGAATTTTCTATTTGTTAGTAAAGAGGAAGATTCCCTCTTGAAAACGATCGACTTTGG 989
Query 1352 ACTCTCCATGTTCTTTAAACCAGACGATGTTTTTACAGATGTTGTTGGTAGCCCATATTA 1411
|||||| ||||||||||| ||||| || ||||||||||||||||||||||| || |||||
Sbjct 990 ACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTCCGTATTA 1049
Query 1412 TGTTGCCCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGATGTCTGGAGTGCTGG 1471
||| || |||||||||||| ||||||||||||| |||||| | ||||| |||||||||||
Sbjct 1050 TGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGAGTGCTGG 1109
Query 1472 AGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCTGAAACCGAACAAGG 1531
|||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1110 TGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGAAACCGAACAAGG 1169
Query 1532 TATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGATCCATGGCCAAGTAT 1591
||||||||| |||||||| || || |||||||||||||| || |||||||||||||| ||
Sbjct 1170 TATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCCATGGCCAAGCAT 1229
Query 1592 ATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGT-CAGGGATCCCAAGAAAAGGT 1650
|||||||| ||||| || || ||||||||||||||||| | |||| |||||| |||
Sbjct 1230 CTCTGAAAGCGCAAAAGACTTGGTGAGGAAAATGCTTGTTC-GGGACCCCAAGCGAAGAC 1288
Query 1651 TAACTGCCCACCAAGTATTATGTCATCCATGGGTTCA-AGTCGACGGTGTGGCTCCAGAC 1709
|||| || || ||||| ||||||||||||||||| || | | |||||||||||||||||
Sbjct 1289 TAACCGCACATCAAGTGTTATGTCATCCATGGGTACAGATT-GACGGTGTGGCTCCAGAT 1347
Query 1710 AAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAGTTTTCTGCAATGAACAAGTTC 1769
|| ||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1348 AAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGAACAAGTTC 1407
Query 1770 AAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAAATCGCCGGCTTG 1829
||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 1408 AAGAAAATGGCTCTTAGAGTCATAGCTGAGAGCTTATCCGAAGAAGAAATAGCCGGTTTA 1467
Query 1830 AAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACTTTCGAAGAACTG 1889
||||||||||| || ||||| || || ||||| ||||||||||||||||| |||||||||
Sbjct 1468 AAAGAAATGTTCAAGATGATTGACGCAGACAACAGTGGTCAGATAACTTTTGAAGAACTG 1527
Query 1890 AAAGCAGGACTAAAACGAGTAGGGGCGAATCTCAAAGAGTCTGAAATTCTCGA-CTTGAT 1948
|||||||||||||||||||| || || |||||||||||||| |||||||| || || ||
Sbjct 1528 AAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAAATTCTTGATCTA-AT 1586
Query 1949 GCAAGCTGCTGATGTGGACAACAGCGGAACAATAGATTACAAAGAGTTCATAGCTGCAAC 2008
||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct 1587 GCAAGCTGCTGATGTAGACAATAGCGGAACGATAGATTACAAAGAGTTCATAGCCGCCAC 1646
Query 2009 ATTACATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTT-TACATACTTTG 2067
||| ||| ||||||||||||||||||||||||||||||| || ||||| | | |||||||
Sbjct 1647 ATTGCATTTAAACAAAATAGAGAGAGAGGACCATTTGTTCGCGGCCTTCTCC-TACTTTG 1705
Query 2068 ACAAAGATGGGAGCGGCTAT-ATCACCCCAGACGAGCTTCAACAAGCTTGTGAGGAGTTT 2126
|||| || | |||||||| | ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1706 ACAAGGACGAGAGCGGCT-TCATCACCCCAGATGAGCTTCAACAAGCTTGCGAGGAGTTT 1764
Query 2127 GGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGACAATGACGGG 2186
|||||||| |||| ||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 1765 GGTGTTGAAGATGCCCGCATAGAAGAAATGATGCGCGATGTTGATCAAGACAAGGATGGG 1824
Query 2187 CGAATAGACTACAACGAGTTTGTGGCGATGATGCAGAAAGGAAGCATCACAGGAGGACCT 2246
||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||
Sbjct 1825 CGAATAGACTACAACGAGTTTGTGGTAATGATGCAGAAAGGGAGCATAATGGGAGGACCT 1884
Query 2247 GTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAAC-TCTAGTTTCTCAG 2302
|||||||||||| ||||||| ||| |||||||| |||| |||| | |||||| ||||
Sbjct 1885 GTGAAAATGGGTTTAGAGAACAGCATTAGCATTTCTCTGAAACAT-TAGTTT-TCAG 1939
> Ahg905714 jgi|Araly1|905714|Al_scaffold_0003_2842
Length=1257
Score = 1279 bits (692), Expect = 0.0
Identities = 1000/1150 (87%), Gaps = 16/1150 (1%)
Strand=Plus/Plus
Query 814 AACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGGCTTAGGACTGAGTCAG 873
||||| ||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct 74 AACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGAGTCAG 133
Query 874 TGTTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTGGGAAGGAAACTCGGAC 933
||||||||||||| ||||||||||| || || |||||||| |||||||||||||| ||||
Sbjct 134 TGTTGCAGAGGAAAACTGAAAACTTTAAAGAGTTCTATTCATTGGGAAGGAAACTTGGAC 193
Query 934 AAGGGCAATTTGGGACGACTTTTTTATGTGTCGAG-AAGACTACGGGGAAGGAGTTTGCC 992
|||| |||||||||||||| |||||||| | ||| ||| ||||||||| |||| |||
Sbjct 194 AAGGCCAATTTGGGACGACGTTTTTATGCCTTGAGAAAG-GTACGGGGAACGAGTATGCG 252
Query 993 TGCAAGTCGATTGCTAAGAGGAAGCTATTGACTGATGAGGACGTTGAGGATGTGAGAAGA 1052
|| | ||||||| | ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 253 TGTACGTCGATTTCCAAGAGGAAGCTTTTGACGGATGAGGACGTTGAAGATGTGAGAAGG 312
Query 1053 GAAATTCAGATAATGCATCACTTGGCTGGTCACCCTAATGTCATCTCCATCAAAGGAGCT 1112
|| ||||||||||||||||||||||||||||| || ||||| || || || ||||| |||
Sbjct 313 GAGATTCAGATAATGCATCACTTGGCTGGTCATCCAAATGTTATATCTATTAAAGGCGCT 372
Query 1113 TATGAGGATGTTG-TGGCAGTGCACCTTGTAATGGAG-TGTTGTGCAGGCGGCGAGCTTT 1170
||||||||||||| | || || |||||||| |||||| || ||| | || ||||||||||
Sbjct 373 TATGAGGATGTTGCT-GCGGTACACCTTGTGATGGAGTTG-TGTTCGGGTGGCGAGCTTT 430
Query 1171 TTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCTGAGCTCACTAGAA 1230
|||| || || |||||||| || || ||||| ||||||||||| |||||||| | ||||
Sbjct 431 TTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTGCGAGAA 490
Query 1231 CCATTGTTGGGGTTGTAGAGGCTTGCCATTCTCTTGGTGTTATGCATCGAGACCTCAAGC 1290
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 491 CCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCGAGACCTCAAGC 550
Query 1291 CCGAGAATTTTCTGTTTGTCAGTAAACACGAAGATTCCCTCTTGAAGACGATTGATTTTG 1350
||||||||||||| || || |||||| | ||||||||||||||||| ||||| || ||||
Sbjct 551 CCGAGAATTTTCTATTCGTTAGTAAAGAGGAAGATTCCCTCTTGAAAACGATCGACTTTG 610
Query 1351 GACTCTCCATGTTCTTTAAACCAGACGATGTTTTTACAGATGTTGTTGGTAGCCCATATT 1410
||||||| ||||||||||| ||||| || ||||||||||||||||||||||| || ||||
Sbjct 611 GACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTCCGTATT 670
Query 1411 ATGTTGCCCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGATGTCTGGAGTGCTG 1470
|||| || |||||||||||| ||||||||||||| |||||| | ||||| ||||||||||
Sbjct 671 ATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGAGTGCTG 730
Query 1471 GAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCTGAAACCGAACAAG 1530
| |||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct 731 GTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTTTGGGCCGAAACCGAACAAG 790
Query 1531 GTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGATCCATGGCCAAGTA 1590
|||||||||| |||||||| || || |||||||||||||| || |||||||||||||| |
Sbjct 791 GTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCCATGGCCAAGCA 850
Query 1591 TATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGT-CAGGGATCCCAAGAAAAGG 1649
| |||||||||||||| || || ||||||||||||||||| | |||| |||| | |||
Sbjct 851 TCTCTGAAAGTGCAAAAGACTTGGTGAGGAAAATGCTTGTTC-GGGACCCCACGCGAAGA 909
Query 1650 TTAACTGCCCACCAAGTATTATGTCATCCATGGGTTCA-AGTCGACGGTGTGGCTCCAGA 1708
|||| || || ||||||||||||||||||||||| || | | |||||||||||||||||
Sbjct 910 CTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATT-GACGGTGTGGCTCCAGA 968
Query 1709 CAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAGTTTTCTGCAATGAACAAGTT 1768
|| ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 969 TAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGAACAAGTT 1028
Query 1769 CAAGAAAATGGCTCTTAGAGTCATTG--CTGAGAGCTTATCTGAAGAAGAAATCGCCGGC 1826
||||||||||||||||||| | || || | |||||| ||||||||||| |||||
Sbjct 1029 CAAGAAAATGGCTCTTAGATTTTTTCAACTT-GT-CTTATCCGAAGAAGAAATAGCCGGT 1086
Query 1827 TTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACTTTCGAAGAA 1886
|| ||||||||||| || ||||| || | ||||| ||||||||||||||||| ||||||
Sbjct 1087 TTAAAAGAAATGTTCAAGATGATTGACACAGACAACAGTGGTCAGATAACTTTTGAAGAA 1146
Query 1887 CTGAAAGCAGGACTAAAACGAGTAGGGGCGAATCTCAAAGAGTCTGAAATTCTCGA-CTT 1945
||||||||||||||||||||||| || || |||||||||||||| |||||||| || ||
Sbjct 1147 CTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAAATTCTTGATCTA 1206
Query 1946 GATGCAAGCT 1955
|||||||||
Sbjct 1207 -ATGCAAGCT 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95225612500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5