BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04890.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487275 jgi|Araly1|487275|fgenesh2_kg.6__409__AT5G04890.1 1709 0.0
> Ahg487275 jgi|Araly1|487275|fgenesh2_kg.6__409__AT5G04890.1
Length=1114
Score = 1709 bits (925), Expect = 0.0
Identities = 1059/1122 (94%), Gaps = 16/1122 (1%)
Strand=Plus/Plus
Query 36 TAATTAATAATGGCAGCGAGACAGCAACAAAAAGGAACAGGCTTCGGGGTTCAATACGAG 95
||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 1 TAATTGATAATGGCAGCGAGACAACAACAGAAAGGAACAGGCTTGGGGGTTCAGTACGAG 60
Query 96 GACTTTGTCCCCAAATCCGAATGGAAAGATCAACCTGAAGCCACCATTCTCAACATTGAC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACTTTGTCCCCAAATCCGAATGGAAAGATCAACCTGAAGCCACCATTCTCAACATTGAC 120
Query 156 CTAACAGGTTTTGCAAAGGAGCAAATGAAAGTGACGTATGTGCACAGCTCGAAGATGATA 215
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTTCCAGGTTTTGCAAAGGAGCAAATGAAAGTAACGTATGTGCACAGCTCGAAGATGATA 180
Query 216 AGAGTCACTGGAGAACGTCCCTTGGCTAATCGGAAATGGAGCCGTTTCAACGAGGTGTTC 275
| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AAAATCACGGGAGAACGTCCCTTGGCTAATCGAAAATGGAGCCGTTTCAACGAGGTGTTC 240
Query 276 ACTGTTCCACAGAATTGTTTAGTGGATAAGATCCATGGGAGCTTTAAGAACAATGTCCTC 335
|||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 241 ACTGTTCCACAGAATTGTCTAGTGGATAAGATCCATGGAAGCTTCAAGAACAATGTCCTC 300
Query 336 ACCATCACCATGCCTAAGGAGACGATCACGAAGGTGGCTTATCTTCCAGAAACTTCTAGA 395
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
Sbjct 301 ACCATCACCATGCCTAAGGAGACGATCACAAAGGTGGCTTATCTTCCAGAAGCTTCTAAA 360
Query 396 ACTGAAGCTGCTGCTCTggagaaggcggcgaagctagaggagaagagattgttagaagaa 455
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 361 ACTGAAGCTGCTGCTCTGGAGAAGGCGACGAAGCTAGAGGAGAAGAGGTTGTTAGAAGAA 420
Query 456 tctagaaggaaagagaaggaagaagaagaagctaagcagatgaagaagcagcttctggaa 515
|| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 421 TCCAGAAGGAAAGAGATGGAAGAGGAAGAAGCTAAGCAGAAGAAGAAGCAGCTTCTGGAA 480
Query 516 gagaaagaGGCGCTAATTaggaagctgcaagaagaagctaaagcaaaggaagaggctgaa 575
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGAAAGAGGCGCTAATTCGGAAGCTGCAAGAAGAAGCTAAAGCAAAGGAAGAGGCTGAA 540
Query 576 atgaggaagcttcaagaagaagctaaagcaaaggAGGA-GGCCGCGGCAAAGAAGCTTCA 634
||||||||||||| ||||||||||||||||||||| || ||| | ||| | |||||||
Sbjct 541 ATGAGGAAGCTTCGAGAAGAAGCTAAAGCAAAGGA-GATGGCTGAGGC--A-AAGCTTCT 596
Query 635 AGAAGAA---ATTGAAGCaaaagagaaacttgaggagagaaagctcgaggaaagg-agac 690
||||||| | ||| ||| |||||||||||||||| | ||||| |||||||| || |
Sbjct 597 AGAAGAAGCTAAGGAATCAAGAGAGAAACTTGAGGAGTGGAAGCTTAAGGAAAGGAAG-C 655
Query 691 ttgaggagaggaagctcgaggaTATGAAGCTTGCGGAAGAAGCTAAACTAAAGAAGATCC 750
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTGAGGAGAGGAAGCTTGAGGATATGAAGCTTGCGGAAGAAGCTAAACTAAAGAAGATCC 715
Query 751 AGGAGAGAAAGTCTGTTGATGAATCTGGAGAAAAAGAGAAGATACTAAAGCCAGAAGTGG 810
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 AGGAGAGAAAGTCTGTTGATGAATCTGGAGGAAAAGAGAAGATACTAAAGCCAGAAGTGG 775
Query 811 TCTATACAAAATCCGGGCACGTGGCTACTCCCAAACCTGAGTCGGGGTCTGGTCTCAAGT 870
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 TCTATACAAAATCCGGGCCCGTGGCTACTCCCAAACCTGAGTCCGGGTCTGGTCTCAAGT 835
Query 871 CCGGGTTTGGAGGAGTAGGCGAGGTGGTGAAGTCAGCggaagaaaaactaggaaacttgg 930
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 CCGGGTTTGGAG---TAGGCGAGGTGGTGAAGTCAGCGGAAGAAAAAATAGGAAACTTGG 892
Query 931 tggaaaaggaaaagaaaatggggaaagggataatggagaaaataagaaggaaagagaTAA 990
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 893 TGGAGAAGGAAAAGAAAATGGGGAAAGGGATAATGGAGAAAATAAGGAGGAAAGAGATAA 952
Query 991 CAAGTGAAGAGAAGAAGTTGATGATGAATGTAGGAGTGGCTgctcttgttatctttgctc 1050
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 953 CAAGTGAAGAGAAGAAGTTGATGATCAATGTAGGAGTGGCTGCTCTTGTTATCTTTGCTC 1012
Query 1051 tcggagcttatgtttcttataccttctgctcttcttcttcttcttcttcctcttcgtctc 1110
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1013 TTGGAGCTTATGTTTCTTATACCTTCTGCTCTTCTTCTCCTTCTTCTTCCTCTTCGTCTC 1072
Query 1111 cttcttcatcatcatcttct---ACCAAACCAGAATGATATA 1149
|||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 CTTCTTCATCATCATCTTCTTCTACCAAACCAGAATGATATA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5