BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04900.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487276 jgi|Araly1|487276|fgenesh2_kg.6__410__AT5G04900.1 1838 0.0
> Ahg487276 jgi|Araly1|487276|fgenesh2_kg.6__410__AT5G04900.1
Length=1158
Score = 1838 bits (995), Expect = 0.0
Identities = 1092/1138 (96%), Gaps = 10/1138 (1%)
Strand=Plus/Plus
Query 47 TCTGTAATGGCTACTTGGAGTGGTTTCAACGTCTCTTCTTCTCCGTTGCTTAGGCTTCGG 106
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TCTGTAATGGCTACTTCGAGTGGTTTCAGTGTCTCTTCTTCTCCGTTGCTTAGGCTTCGG 60
Query 107 TCTTCCTCCGTCTCAAATGTCACT-AAGCTTCCGTTTCTCTCTCCTATTTGCCGGCGTCG 165
|||||||||||| ||||||||||| || ||||| |||||||||||| |||||||||||||
Sbjct 61 TCTTCCTCCGTCACAAATGTCACTCAA-CTTCCATTTCTCTCTCCTCTTTGCCGGCGTCG 119
Query 166 GTTACTGGCAGAACGCTTTGGTCTCGCAACTGTCGTTGTTACGCGCCAAAACCTCACGGT 225
|||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 120 GTTACTGGAAGAACGCTTCGGTCTCGCAACTATCGTTGTTACGCGCCAAAACCTCTCGGT 179
Query 226 TACTCCGTCGTCTGCGGCGGTGGAAGCTCGTATCTCAGGGAAAAGAGAACCTATGACGCC 285
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 TACTCCGCCGTCTGCGGCGGTGGAAGCTCGTATCCCAGGGAAAAGAGAACCTATGACGCC 239
Query 286 TCCGTATAACATATTGATCACTGGCTCAACCAAAGG--T-ATAGGATATGCATTAGCTAG 342
|||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 240 TCCGTATAACGTCTTGATCACTGGCTCAACCAAAGGTTTCATAGGATATGCATTAGCTAG 299
Query 343 AGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGA 359
Query 403 GACTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGA 462
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGA 419
Query 463 TGTTACGGAAGGGAAGGATGTGAGGGAACTTGTAGCTTATAGTCAGAAGAATCTTAAATA 522
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TGTTAGGGAAGGGAAGGATGTGAGGGAACTCGTAGCTTATAGTCAGAAGAATCTTAAATA 479
Query 523 CATTGACATTTGGATAAATAATGCGGGATCTAATGCATATAGCTTTAAACCTTTGGCAGA 582
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CATTGACATTTGGATAAATAATGCGGGATCTAATGCATACAGCTTTAAACCTTTGGCAGA 539
Query 583 GGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTAGGTCTCATGTTATG 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTTGGTCTCATGTTATG 599
Query 643 TTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATAT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATAT 659
Query 703 TGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAA 719
Query 763 ACGGAGTGTCGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAA 822
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACGGAGTGTTGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAA 779
Query 823 AAATGTCGTGGTGCATAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGG 882
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAATGTCGTGGTGCACAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGG 839
Query 883 AGCAACTACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCCGAAGTGGT 942
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 AGCAACAACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCTGAAGTGGT 899
Query 943 GGCTGAGTACCTTGTCCCAAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGAC 1002
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGCTGAGTACCTTGTCCCGAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGAC 959
Query 1003 TTACATCCGTTTCCTAACTGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCGTT 1062
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 TTACATTCGTTTCCTAACCGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCATT 1019
Query 1063 GGGAGCAAGGAAGAACAGGTATGTTACTGAAGAGTAGGTGTC---AAACTAAGTATTAGA 1119
|||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1020 GGGAGCGAGGAAGAACAGGTATGTTACTGAAGAGTAGGTGTCGTCAAAATAAGGATTAGA 1079
Query 1120 ATTGTATT-GCTTTCTCAGTTTGTTCAATGGTAAATAAAAACCTCTACATTTTGTTCA 1176
|||||||| | |||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1080 ATTGTATTTG-TTTCAGTGTTTGTTCAATGGTTAATAAAAACCTCTACATCTTGTTCA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5