BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04910.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487277 jgi|Araly1|487277|fgenesh2_kg.6__411__AT5G04910.1 1090 0.0
> Ahg487277 jgi|Araly1|487277|fgenesh2_kg.6__411__AT5G04910.1
Length=743
Score = 1090 bits (590), Expect = 0.0
Identities = 699/751 (93%), Gaps = 9/751 (1%)
Strand=Plus/Plus
Query 1 GCAACTTTCTCTTTGCTTCTTCGtctctctctctctGTCGTGTTTGAGAAGACGAAAAGA 60
||||||||||||||| |||| | ||| ||||||||||||||||||||||||| ||||
Sbjct 1 GCAACTTTCTCTTTG---CTTC-T-TCT-TCTCTCTGTCGTGTTTGAGAAGACG-GAAGA 53
Query 61 GTCGGAGAGAAAGATCGGACGATGAGTGCCGAAGATTTCCAGAAGAAGGTTTCCCTCAGA 120
|||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct 54 GTCGGAGAAAAAGATCGGAGGATGAGTGCCGAAGATTTCCAGAAGAAGGTCTCCATCAGA 113
Query 121 GATTCCCTCTCCGGCGATATTGAGAA-CGAATGCGGCGGTTCCGGTGTCGGGTCTACTAG 179
||||||||| |||| || || || || ||||||||||| |||||| | ||||||||||||
Sbjct 114 GATTCCCTCGCCGGAGAAATCGA-AATCGAATGCGGCGTTTCCGGCGACGGGTCTACTAG 172
Query 180 TTCGACGGTGGGCTCCGGCGTCGCCTCTCAAACCCTGGTCCTGCTTCGGAGTCTGTTGGA 239
||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 173 TTCCACGGTAGGCTCCGGCGTCGCCTCGCAAACCCTGGTTCTGCTTCGGAGTCTGCTGGA 232
Query 240 GATTCAGCAGCGCCGAGCTCAGGCTTACGCCAATCTCAAAAGTGGATTCTCAGAGTATGT 299
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 233 GATTCAGCAGCGTCGAGCTCAGGCTTACGCTAAGCTCAAAAGTGGATTCTCAGAGTATGT 292
Query 300 GGAGTCTGGTGCTGAAGCACTTTATCAGAAGCTGTGCAGCGAGATTACAACGGAGTTCAG 359
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 GGAGTCTGGTGCTGAACCACTTTATCAGACGCTGTGCAGCGAGATTACAACGGAGTTCAG 352
Query 360 TGAATGTTCGAAACAAGTGCGCGAAATGGAATCTCTGTTTCTAAATCCAGAAGTTGGAAG 419
||||||||||||||||||||||||||||||||||| |||||| |||||| |||| || ||
Sbjct 353 TGAATGTTCGAAACAAGTGCGCGAAATGGAATCTCAGTTTCTGAATCCACAAGTCGGTAG 412
Query 420 AGCTGATCTTGCTAAACTTCTCAGCGACATTCAAACTCAAGAGAAGCAGAAATTGCATCT 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGCTGATCTTGCTCAACTTCTCAGCGACATTCAAACTCAAGAGAAGCAGAAATTGCATCT 472
Query 480 GACTGTTACAATACAGGTACTGAAGAAGGCAGGAAGACCGTCAGAACGAATGCTGACACA 539
||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 GACCGTCACAATACAGGTGCTGAAGAAGGCAGGGAGACCGTCAGAACGAATGCTGACACA 532
Query 540 TGAGAACTGCAAATTCAAGAAGCCTATGCAACACGAGTGCGTGCATCTTCATGAGATTAC 599
||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 533 TGAGAACTGCAAATTCAAGAAACCGATGCAGCACGAGTGTGTGCATCTTCATGAGATTAC 592
Query 600 TGAAGCTGCAGGAACAGAGGAAGCAGAAGCAGATGCAGAGTTTGATAACGCTTTGAAGGA 659
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 593 TGAAGCTGCAGGAACAGAGGAAGCAGAAGCGGATGCAGAGTTTGATAACGCCTTAAAGGA 652
Query 660 GGCCATTAGAGGAGTGCAAGATGCTGTGACTAGCATCAATGAGTATTTGGAAGACATTCG 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGCCATTAGAGGAGTGCAAGACGCTGTGACTAGCATCAATGAGTATTTGGAAGACATTCG 712
Query 720 GTATGAGATTGAAGCCCTCGAAGCTGATTAA 750
||| |||||||||||||| |||||| |||||
Sbjct 713 GTACGAGATTGAAGCCCTTGAAGCTCATTAA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5