BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04920.1
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487278 jgi|Araly1|487278|fgenesh2_kg.6__412__AT5G04920.1 2261 0.0
> Ahg487278 jgi|Araly1|487278|fgenesh2_kg.6__412__AT5G04920.1
Length=1567
Score = 2261 bits (1224), Expect = 0.0
Identities = 1412/1498 (94%), Gaps = 31/1498 (2%)
Strand=Plus/Plus
Query 259 TTGGTCAACCGATCTATTAATTTGACTAGAGAGG-A---A-C-G---AGCTGTATGATAT 309
|||||||||||||||||| ||| ||||||||||| | | | | ||||||||||| |
Sbjct 1 TTGGTCAACCGATCTATTGATTGGACTAGAGAGGAACGCAGCTGAAAAGCTGTATGATCT 60
Query 310 ATCTGCTTCCGAATTGAGTCTCCATGGCTAGTGGAAGCAGCAGCATCGCAATCGGTGGTT 369
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 ATCTGCTTCCGAATTGAGTCTCCATGGCTAGTGGAAGCAGCAGCATCGGAATCGATGGTT 120
Query 370 TGTTTGAGAACGCGGAGGTGACTACGAGTGGTAGACCAGTGCTTCGTCGCAATGAGGTCG 429
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTTTTGAGAACGCGGAGGTGACTACGAGTGGAAGACCAGTGCTTCGTCGCAATGAGGTCG 180
Query 430 AATGTTTCCTCCTCTCCTCCATCGATATAGATTCCGAAGATGATCCGCCGCGATTCACAG 489
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AATGTTTCCTCCTATCCTCCGTCGATATAGATTCCGAAGATGATCCGCCGCGATTCACCG 240
Query 490 CTTTGAGGTCTGGAAATCTAATCCTTACCACTCATCGTCTCATATGGATTCCTTCTCAAT 549
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 241 CTTTGAGGTCTGGAAATCTAATTCTAACAACTCATCGTCTCATATGGATTCCTTCTCAAT 300
Query 550 CAAACGAATCTGTTCCTTCTTCGA-TTCCGCTCTCCGCCGTTACTCACATCTAT-TCCCA 607
|||||| | ||||||||||||| | |||| ||| ||||||||||||| |||| | |||||
Sbjct 301 CAAACGGAGCTGTTCCTTCTTC-AGTTCCTCTCGCCGCCGTTACTCATATCT-TCTCCCA 358
Query 608 TAAGAAATCAATCAAGTCTATGTTCCATTCGCCTAGAATCCGATTTCAAGCGGATCCC-G 666
||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
Sbjct 359 TAAGAAATCAATCAAGTCTATGTTCCATTCGCCGAGAATCCGATTTCAAGC-GAACCCGG 417
Query 667 GTTCGATTGTTGTAACGATTGTGTTTAGAGGGAAAGGGGATTTTGATGGCTTTTTGTCGA 726
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||
Sbjct 418 GTTCGATTGTTGTAACGATTGTCTTTAGGGGGAAAGGGGATTTTGATGAATTTTTGACGA 477
Query 727 AATTGTGGGAATGTTGGAGAGGTAGGGCATGGGAAGAAGAGGAGAAGAGCGAGAGTGAGA 786
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 478 AATTGTGGGAATGTTGGAGAGGCAGAGCATGGGAAGAGGAGGAGAAGAGCGAGAGTGAGA 537
Query 787 CTTCAAAGTCAGGATCTGGAACAGTTGCGCAAGGTTTGTATGGAAACGATGGAACGGTGA 846
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTCAAGGTCAGGATCTGGAACTGTTGCGCAAGGTTTGTATGGAAACGATGGAACGGTGA 597
Query 847 GGATGGTGGGATTGGCTGGGATTTTGAGGAAGGAGCAAGAACAGTGGGAGAGCACAGATA 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 GGATGGTGGGATTGGCTGGGATTTTGAGGAAGGAGCAAGAACAGTGGGAGAGCACAGACA 657
Query 907 AGAGCTTGCAAGATGCTTTTCAGGATTTGAATGCTCTTATGAGTAAGGCTAAAGAGATGG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAGCTTGCAAGATGCTTTTCAGGATTTGAATGCTCTTATGAGTAAGGCTAAAGAGATGG 717
Query 967 TGAGTCTGGCAGAGAAAATGCGGCAGAAGCTTTTGTCTGCTCCTAGTAGTCAGAACGGTT 1026
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGAGTCTGGCAGAAAAAATGCGGCAGAAGCTTTTGTCTGCTCCTAGTAGTCAGAACGGTT 777
Query 1027 CAACTGATGATGAAGAAATGGGGTCCAAAGAAGAAATGCAACAGTGGATGTTGAGCGTTG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CAACTGATGATGAAGAAATGGGGTCCAAAGAAGAAATGCAACAGTGGATGTTGAGCGTTG 837
Query 1087 GTATTATCTCACCAGTTACAAAGGAATCTGCTGGTGCATTGTACCACCAAGAATTGTCCC 1146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTATTATCTCCCCAGTTACAAAGGAATCTGCTGGTGCATTGTACCACCAAGAATTGTCCC 897
Query 1147 GCCAGTTGGCAGATTTTGTCAGAATCCCATTAGAAAAAGCTGGGGGAATGATCAGCCTTA 1206
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 898 GCCAGTTGGCAGATTTTGTCAGAATCCCATTAGAACAAGCTGGGGGGATGATCAGCCTTA 957
Query 1207 CTGATATGTATTACCACTTCAACCGAGCTCGTGGGACAGAGTTGATTTCCCCAGACGATT 1266
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 CTGATATGTATTACCACTTCAACCGAGCTCGTGGGACAGAGTTGATTTCTCCAGACGATT 1017
Query 1267 TGTGGCAAGCTTGTACCCTCTGGGAGAAATTTGATGTTCCAGTAATGCTGCGGAAGTTTG 1326
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 TGTGGCAAGCTTGTACCCTCTGGGAAAAATTTGATGTTCCAGTAATGCTGCGGAAGTTTG 1077
Query 1327 ATAGCGGTGTGATGGTCATCCAAAACAAGTCTCACAGCGACGAAGAGGTTATGAGTAGAA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATAGCGGTGTGATGGTCATCCAAAACAAGTCTCACAGCGACGAAGAGGTTATGAGTAGAA 1137
Query 1387 TCAGAATGCTTGTGACAAAAACTGAAACTCTTAGAGTTGGAGTTACTGCTAGTGATGCAG 1446
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TTAAAATGCTTGTGACAAAAACTGAAACTCTTAGAGTTGGAGTCACTGCTAGTGATGCAG 1197
Query 1447 CTTTGACGCTAAAGATTGCTCCTGCCATGGCTAAGGAACATCTACTATCTGCAGAGACCA 1506
|||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 CTTTGACGCTGAAGATCGCTCCTGCCATGGCTAAGGAACATCTACTAACTGCAGAGACCA 1257
Query 1507 AAGGTTTGCTATGTAGAGACATGAGCCCAGATGGGCTTCGATTCTATTTCAACCTGTTTC 1566
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1258 AAGGTTTGCTATGTAGGGACATGAGCCCAGATGGGCTTCGATTCTATTTCAATCTGTTCC 1317
Query 1567 CCGAGATTGATCCAACCAATCTCCATATAGTCAAGGAGTTTGGGACATACGGTGAATGGA 1626
||||||| ||||| |||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1318 CCGAGATCGATCCCACCAATATCCATATAGTCAAGGACTTTGGGACGTACGGTGAATGGA 1377
Query 1627 TCAAAGCGACCAGTTTGTTGTCTGTATGACAAAGCTTTTGCTGTAAACTATTTGTAATAA 1686
||||||||||||||||||||||||||||||||||||||| | || || | |
Sbjct 1378 TCAAAGCGACCAGTTTGTTGTCTGTATGACAAAGCTTTT--T--AA--TA-----AC-A- 1424
Query 1687 GACATACAAAATATACAAACACAAATTTGGATTTT-GAATCAAAATTGCCAATAATTT 1743
||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||
Sbjct 1425 --CATACAAAATATACAAACATAAATTTGGATTTTTGACTCAAAAATGCCAATAATTT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70162231290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5