BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04950.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487282 jgi|Araly1|487282|fgenesh2_kg.6__416__AT5G04950.1 1866 0.0
Ahg950262 jgi|Araly1|950262|scaffold_802149.1 935 0.0
> Ahg487282 jgi|Araly1|487282|fgenesh2_kg.6__416__AT5G04950.1
Length=1228
Score = 1866 bits (1010), Expect = 0.0
Identities = 1147/1212 (95%), Gaps = 13/1212 (1%)
Strand=Plus/Plus
Query 1 AAAAGATTATT-ATTACTTATCTTCTCCCCTGAAATAACCTCATAGTGTCGATATGGCTT 59
||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1 AAAAGATTATTGA-TACTTATCTTCTCTCCTGAAATAACCTCATAGTGTCGACATGGCTT 59
Query 60 GCCAAAACAATCTCGTTGTGAAGCAAATCATCGACTTGTACGACCAAATCTCAAAGCTCA 119
||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 60 GCCAAAACAATCTCGTTGTGAAGCAAATCGTCGACTTATACGATCAAATCTCAAAGCTCG 119
Query 120 AGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTCGGACAACTCGTGTCCACGTGCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTCGGACAACTCGTGTCCACGTGCT 179
Query 180 TACCCACGGATACAAACATCGATGTCACAAATATGTGTGAAGAAGTCAAAGACATGAGAG 239
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TACCCACGGATACAAACATCGATGTCACAAATATGTGTGAAGAAGTCAAATACATGAGAT 239
Query 240 CTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACACTTCTCCACAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACACTTCTCCACAA 299
Query 300 TTTTGGGATCTTTACAAGAAGACCAAAACCCACTTGACCATTTACACATCTTTCCTTACT 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 TTTTGGGATCTTTACAAGAAGACCAAAACCCACTTCACCATTTACACATCTTTCCTTACT 359
Query 360 ACTCCAACTACCTCAAGCTAGGCAAGCTCGAGTTCGATCTCCTGAGCCAACACTCAAGCC 419
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 ACACCAACTACCTCAAGCTAGGCAAGCTCGAGTTCGATCTCCTGAGTCAACACTCAAGCC 419
Query 420 ATGTCCCCACCAAGATTGCCTTCGTGGGTTCGGGTCCGATGCCTCTCACATCCATCGTAT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 ATGTCCCCACCAAGATTGCCTTCGTGGGTTCGGGTCCGATGCCTCTCACATCCATCGTCT 479
Query 480 TGGCCAAGTTTCACCTCCCCAACACGACGTTCCACAACTTTGACATCGACTCACACGCAA 539
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 480 TGGCCAAGTTTCACCTCCCGAACACGACCTTCCACAACTTCGACATCGACTCACACGCAA 539
Query 540 ACACACTCGCTTCAAACCTCGTCTCTCGCGACCCGGACCTCTCAAAACGCATGATCTTCC 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 ACACACTCGCTTCAAACCTCGTCTCTCGCGATCCGGACCTCTCAAAACGCATGATCTTCC 599
Query 600 ACACAACGGACGTACTAAACGCAACCGAAGGCCTTGACCAATATGACGTCGTTTTCTTAG 659
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 600 ACACAACGGACGTACTAAACGCTACCGAAGGCCTTGACCAATATGACGTCGTTTTCTTGG 659
Query 660 CGGCGCTTGTAGGGATGGACAAAGAGTCAAAGGTCAAAGCCATCGAGCACTTGGAGAAAC 719
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 CGGCTCTTGTTGGGATGGACAAAGAGTCAAAGGTCAAAGCCATTGAGCACTTGGAGAAAC 719
Query 720 ACATGGCTCCTGGAGCTGTTCTTATGCTAAGGAGTGCTCATGCTCTCAGAGCTTTCTTAT 779
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACATGGCTCCTGGAGCTGTCCTTATGCTAAGGAGTGCTCATGCTCTCAGAGCTTTCTTAT 779
Query 780 ATCCAATCGTTGACTCGTCTGATCTCAAAGGCTTTCAACTCTTGACCATCTATCATCCAA 839
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 ATCCCATCGTTGACTCTTCTGATCTCAAAGGCTTTCAGCTCTTGACCATCTATCATCCAA 839
Query 840 CCGATGACGTGGTTAACTCGGTTGTGATCGCACGTAAGCTCGGTGGTCCGACCACGCCCG 899
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 840 CCGATGATGTGGTTAACTCGGTTGTGATCGCACGTAAGCTCGGTGGTTCGACCACGACCG 899
Query 900 GGGTTAATGGTACTCGTGGATGCATGTTTATGCCTTGTAACTGCTCCAAGATTCACGCGA 959
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 900 GGGTTAATGGTACTCGTGGCTGCATGTTTATGCCTTGTAACTGCTCCAAGATCCACGCGA 959
Query 960 TCATGAACAACCGTGGTAAGAAGAATATGATCGAGGAGTTTAGTGCCATCGAGTAAACAA 1019
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 TCATGAACAACCGTGGTAAGAAGAATATAATCGAGGAGTTTAGTGCCATCGAGTAAACAA 1019
Query 1020 ACAATTAATA--A--AACACATCTCTTTTCTTAAGATTGTGTTAATGTTTTT-GTCTTAT 1074
| ||||||| | |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1020 ATAATTAATTGTATTAACACATCTCTTTTCTTAAGATTGTGTTCATGTTTTTTGTCTTAT 1079
Query 1075 ATTAACTGCTCTTTTCATTTCATGTCTtgtgtgtgtgtgG-CTACGCTTATTAAGTGTTA 1133
| |||||||||||||| ||||||||||| ||||||| ||| |||| || |||||| | |
Sbjct 1080 AATAACTGCTCTTTTCGTTTCATGTCTTTTGTGTGTTTGGGCTACTTTTGTTAAGTAT-A 1138
Query 1134 AGTTTGTGAATTTTGAGTTCTTTGATCTTTGTTATGAATGAAAAAGATACCGAACATTTT 1193
||||||||||||| |||||||||||||| ||| || | ||| ||||| |||| |||
Sbjct 1139 AGTTTGTGAATTTAGAGTTCTTTGATCTC-GTTTTGTACGAA---GATACAGAACCCTTT 1194
Query 1194 GTTTGTTGTACT 1205
| ||||||||||
Sbjct 1195 GCTTGTTGTACT 1206
> Ahg950262 jgi|Araly1|950262|scaffold_802149.1
Length=1006
Score = 935 bits (506), Expect = 0.0
Identities = 856/1021 (84%), Gaps = 39/1021 (4%)
Strand=Plus/Plus
Query 38 CCTCATAGTGTCGATATGGCTTGCCAAAACAATCTCGTTGTGAAGCAAATCATCGACTTG 97
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 6 CCTCATAGTGTCGACATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATCGACTTA 65
Query 98 TACGACCAAATCTCAAAGCTCAAGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTC 157
||| | ||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 66 TACAATCAAATCTCAAACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTC 125
Query 158 GGACAACTCGTGTCCACGTGCTTACCCACGGATACAAACATCGATGTCAC--AAATATGT 215
||||||||||| |||||||||||||| || || ||||||||||||||||| | |||
Sbjct 126 GGACAACTCGTATCCACGTGCTTACCTACAGACACAAACATCGATGTCACGGAGATACAC 185
Query 216 G-TGAAGAAGTCAAAGACATGAGAGCTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGT 274
| |||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 186 GATGAAAAAGTCAAAGACGCGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGT 245
Query 275 TATTTAGAGCAACACTTCTCCACAATTTTGGGATCTTTACAAGAAGACCAAAACCCACTT 334
||||||||||||||||| || ||||| || | ||||| |||||| || ||||||
Sbjct 246 TATTTAGAGCAACACTTTTCAACAATCTTAAGCTCTTTT---GAAGAC-AA--CCCACTA 299
Query 335 GACCATTTACACATCTTTCCTTACTACTCCAACTACCTCAAGCTAGGCAAGCTCGAGTTC 394
||||||||||||| ||||| || ||| |||||| |||||||||| || ||||| |||
Sbjct 300 AACCATTTACACATTTTTCCCTATTACAACAACTATATCAAGCTAGGAAAACTCGAATTC 359
Query 395 GATCTCCTGAGC-CAACACTCAAGCCATGTCCCCACCAAGATT-GCCTTCGTGGGTTCGG 452
|||||||| ||| |||||| ||| ||||||||| ||||| | | || || | |||||||
Sbjct 360 GATCTCCT-AGCACAACACACAACCCATGTCCCGACCAA-AGTCGCTTTTATCGGTTCGG 417
Query 453 GTCCGATGCCTCTCACATCCATCGTATTGGCCAAGTTTCACCTCCCCAACACGACGTTCC 512
|||||||||| || ||||||||||| ||||||||||| || || |||||||| |||||||
Sbjct 418 GTCCGATGCCACTTACATCCATCGTCTTGGCCAAGTTCCATCTTCCCAACACAACGTTCC 477
Query 513 ACAACTTTGACATCGACTCACACGCAAACACACTCGCTTCAAACCTCGTCTCTCGCGACC 572
||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 478 ACAACTTCGACATCGACTCACACGCCAACACACTCGCTTCAAACCTCGTTTCTCACGATT 537
Query 573 CGGACCTCTCAAAACGCATGATCTTCCACACAACGGACGTACTAAACGC-AACCGAAGGC 631
| |||||||| ||||||||||| ||||||||||| || || ||||||| || |||||
Sbjct 538 CTGACCTCTCGAAACGCATGATTTTCCACACAACTGATGTGTTAAACGCTAAG-GAAGGG 596
Query 632 CTT-GACCAATATGACGTCGTTTTCTTAGCGGCGCTTGTAGGGATGGACAAAGAGTCAAA 690
|| |||||||| || || ||||||| || || ||||| |||||||| |||||||||||
Sbjct 597 -TTAGACCAATACGATGTTATTTTCTTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAA 655
Query 691 GGTCAAAGCCATCGAGCACTTGGAGAAACACATGGCTCCTGGAGCTGTTCTT-ATGCTAA 749
||||||||| || ||||| |||||||| || ||||||||||||||||| || |||||||
Sbjct 656 GGTCAAAGCTATTGAGCATTTGGAGAAGCATATGGCTCCTGGAGCTGTG-TTGATGCTAA 714
Query 750 GGAGTGCTCATGCTCTCAGAGCTTTCTTATATCCAATCGTTGACTCGTCTGATCTCAAAG 809
| |||||||||| ||| ||||||||||| ||||||||||||||||| | |||||| ||||
Sbjct 715 GAAGTGCTCATGGTCTTAGAGCTTTCTTGTATCCAATCGTTGACTCTTGTGATCTTAAAG 774
Query 810 GCTTTCAACTCTTGACCATCTATCATCCAACCGATGACGTGGTTAACTCGGTTGTGATCG 869
| ||| | | || ||||| |||||||| ||||||| |||||||| ||||| || ||||
Sbjct 775 GGTTTGAGGTGTTAACCATTTATCATCCGTCCGATGATGTGGTTAATTCGGTGGTCATCG 834
Query 870 CACGTAAGCTCGGTGG-TCCGACC-ACGCCCG-GG--GTTA-AT-GGTACTCGTGGATGC 922
|||||||||| ||||| || | | || || || | | || || || ||| ||
Sbjct 835 CACGTAAGCTTGGTGGGTCAAATGGA-GCTCGAGGCAGCCAGATCGG-ACG-GTG--TG- 888
Query 923 ATGTTTATGCCTTGTAACTGCTCCAAGATTCACGCGATCATGAACAACCGTGGTA---AG 979
|| ||||||| ||||||||||| ||| | ||||||||||||||||| ||||||| ||
Sbjct 889 -TGGTTATGCCATGTAACTGCTCTAAGGTCCACGCGATCATGAACAATCGTGGTATGGAG 947
Query 980 AAGAATATGATCGAGGAGTTTAGTGCCATCGAGTAAACAAACAATTA-ATAAAACACATC 1038
|||||| ||||||||||||||||||||||||||||||||| || || |||| ||||||
Sbjct 948 AAGAATTTGATCGAGGAGTTTAGTGCCATCGAGTAAACAAGTAACTACATAA--CACATC 1005
Query 1039 T 1039
|
Sbjct 1006 T 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5