BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04960.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487283 jgi|Araly1|487283|fgenesh2_kg.6__417__AT5G04960.1 2639 0.0
Ahg341207 jgi|Araly1|341207|fgenesh1_pg.C_scaffold_3000970 405 6e-112
Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 71.3 3e-11
> Ahg487283 jgi|Araly1|487283|fgenesh2_kg.6__417__AT5G04960.1
Length=1890
Score = 2639 bits (1429), Expect = 0.0
Identities = 1713/1847 (93%), Gaps = 31/1847 (2%)
Strand=Plus/Plus
Query 42 TCACAAACGAGAGGCC-GGTTAGGAGGAAATTACAAAAATGTCCTCCTACGGCAGACTCG 100
||||| |||||||||| || |||||||||||||| |||||||||||||| |||||||| |
Sbjct 25 TCACATACGAGAGGCCAGG-TAGGAGGAAATTACCAAAATGTCCTCCTATGGCAGACTTG 83
Query 101 ACGAGCATGAGCAAGCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATTGCCATCA 160
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 84 ACGAGCATGAGCAATCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATCGCCATTA 143
Query 161 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCGTCGTTGGAACCACAG 220
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 144 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCATCGTTGGAACCACAG 203
Query 221 CTCGCGATAACAGCAAGAAACCACCGACGGAGAATAACGGAGAGCCAATATCAGTCTCCG 280
|| ||||||| |||||||| | || ||||||| ||||||||||||||| || ||||| |
Sbjct 204 CTTACGATAACGGCAAGAAATCGCCAACGGAGAGTAACGGAGAGCCAATCTCCGTCTCGG 263
Query 281 TGAAAGCCCTGTGCGACGTGACATTGCACAAAGAAAAATGTTTCGAGACCCTTGGATCGG 340
|||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| |||
Sbjct 264 TGAAAGCCGTGTGCGACGTGACATTGCACAAAGACAAATGTTTTGAGACCATTGGAACGG 323
Query 341 CTCCAAACGCGAGCCGATC-AAGCCCAGAGGAGCTTTTCAAGTACGCCGTCAAAGTCACC 399
||||||||||||||| | | || ||| |||||||||||||||||||| |||||| |||||
Sbjct 324 CTCCAAACGCGAGCC-AACTAAACCCGGAGGAGCTTTTCAAGTACGCAGTCAAAATCACC 382
Query 400 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 442
Query 460 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATCGGGCTAGCCGTTGATCAACTCAAC 519
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 443 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATTGGACTAGCCGTTGACCAACTCAAC 502
Query 520 --GA--A--A---CAAT------------GACGTCGTCCTTGAAGAACTTTGACGATCTA 558
|| | | |||| ||||||| ||||||||| | | ||||||||
Sbjct 503 GAGACGATGACGTCAATGAAAGACAAAACGACGTCGCCCTTGAAGAGCGTCGACGATCTC 562
Query 559 AGGACGTGGCTTAGCTCCGTGGGAACGTACCAAGAAACGTGTATGGATGCGTTAGTGGAA 618
|||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||
Sbjct 563 AGGACGTGGCTTAGCTCCGTGGAAACGTACCAAGAAACATGTATGGACGCATTAGTGGAA 622
Query 619 GCGAACAAACCAAGTTTAACGACTTTCGGAGAAAACCATTTGAAAAACTCGACGGAGATG 678
|||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 623 GCGAACAAACCAGGTTTGACAACTTTCGGTGAAAACCATTTGAAAAACTCGACGGAGATG 682
Query 679 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATCGCTGACACCGTTAAGTTT 738
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 683 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATAGCTGACACCGTTAAGTTT 742
Query 739 AGACGACGTCGTTTGTTGGAGACTGGTAACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 798
||||||||||| ||| ||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 743 AGACGACGTCGGTTGATGGCTACCGGTGACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 802
Query 799 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTTGAA-GAAGAAAGCGACTATCGTGGT 857
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 803 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTT-AAGGAAGAAAGCGACCATCGTGGT 861
Query 858 GGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGAGGCTTTAGCGGAAGTGGAGGA 917
||| |||||||| || ||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 862 GGCCAAAGACGGCTCAGGGAAGTATAGGACGATAGGTGAGGCTTTAGCGGAAGTGGAGGA 921
Query 918 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTAGAGAATGTTAG 977
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 922 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGAGAATGTTAG 981
Query 978 GGTTGAGAAGACGAAATGGAATGTTGTGATGGTTGGAGATGGACAAAGTAAGACTATCGT 1037
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 982 GGTTGAGAAGAAGAAATGGAATGTTGTGATGGTTGGAGATGGACAGAGTAAGACTATCGT 1041
Query 1038 CTCTGCTGGACTCAACTTCATCGATGGAACCCCCACTTTCGAAACCGCCACATTTGCTGT 1097
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1042 CTCTGCTGGACTCAACTTCATCGATGGAACACCCACGTTCGAAACCGCCACATTTGCTGT 1101
Query 1098 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACACAGCTGGTCCAGCTAA 1157
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1102 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAGCTGGTCCAACCAA 1161
Query 1158 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTATCTGTGTTCTACAAGTGCACCAT 1217
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1162 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTGTCTGTGTTCTACAAGTGCACTAT 1221
Query 1218 GGACGCTTTCCAAGATACAATGTACGCTCATGCACAACGTCAGTTTTACCGTGATTGTGT 1277
||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1222 GGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTTTTACCGTGATTGTGT 1281
Query 1278 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAAGTGCGA 1337
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1282 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAATTGTGA 1341
Query 1338 GATCTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1397
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1342 GATCTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1401
Query 1398 AGATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1457
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1402 AGATCCGAACCAAAACACCGGAATCTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1461
Query 1458 CTTAACCGATATCCAAACATTCCTAGGCCGGCCTTGGAAGGATTTCTCTACAACGGTTAT 1517
| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1462 CCTAACCGATATCCAAACGTTCCTAGGCCGGCCTTGGAAGGACTTCTCCACAACGGTGAT 1521
Query 1518 CATGAAGTCGTTCATGGACAAATTCATCAACCCGAAAGGGTGGTTACCGTGGACAGGAGA 1577
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1522 CATGAAGTCGTACATGGACAAATTTATCAACCCGAAAGGGTGGTTACCGTGGACAGGATA 1581
Query 1578 TACCGCGCCAGACACGATCTTTTACGCCGAGTACTTAAATTCCGGGCCAGGAGCATCGAC 1637
| |||| ||| |||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1582 TGCCGCACCATACACCATCTTTTACGCCGAATACTTAAATTCCGGGCCAGGAGCCTCGAC 1641
Query 1638 CAAGAACCGGGTTAAGTGGCAAGGGTTGAAGACGTCTTTAACAAAGAAGGAAGCAAATAA 1697
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1642 CAAGAACCGGGTTAAGTGGAAAGGGTTGAAGACGTCTTTAACAAATAAGGAAGCAAATAA 1701
Query 1698 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCTACCAAAGTTCCCTT 1757
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1702 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCAACCAAAGTTCCGTT 1761
Query 1758 CAACTCTGATTTTTGATATTTTTTGCTGGAAAA-GGCTGGTCTGAAAACTGATG-CATGG 1815
||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| | | |
Sbjct 1762 CAAATCTGATTTTTGATATTATTTGCCGGAAAAAGGCTGGTCTGAAAATTGATGGC-TAG 1820
Query 1816 CTAGTCGTTCTTTAATTTG-TTTATAACGAACATACAACATTCCCTT 1861
||||||||||||||||||| ||| |||||||||||||| ||| ||||
Sbjct 1821 CTAGTCGTTCTTTAATTTGGTTTCTAACGAACATACAATATTTCCTT 1867
> Ahg341207 jgi|Araly1|341207|fgenesh1_pg.C_scaffold_3000970
Length=1686
Score = 405 bits (219), Expect = 6e-112
Identities = 706/936 (75%), Gaps = 53/936 (6%)
Strand=Plus/Plus
Query 849 TATCGTGGTGGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGA-GGCTTTAGCGG 907
||| ||||||||||| || || |||||||| ||| | ||||| || | |||||||| ||
Sbjct 765 TATTGTGGTGGCTAAGGATGGTTCGGGGAAGTATAGAACGATAAGT-AGGGCTTTAGAGG 823
Query 908 AAGTGGAGGAGAAGAATGAGAA-ACCTACGATTATATATGTGAAGAAAGGAGTTTATTTA 966
| ||| ||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 824 ATGTGCCTGAGAAGAGTGAGAAGA-GGACGATTATATATGTGAAGAAAGGAGTTTATTTT 882
Query 967 GAGAATGTTAGGGTTGAGAAGACGAAATGGAATGTTGT-GATGGTTGGAGATGGACAAAG 1025
|||||||| | ||| ||||| | || ||||||||||| | |||||||||||||| | ||
Sbjct 883 GAGAATGTGAAGGTGGAGAAAAAGATGTGGAATGTTGTTG-TGGTTGGAGATGGAGAGAG 941
Query 1026 TAAGACTATCGTCTCTG-CTGGACTCAACT-TCATCGATGGAACCCCCACTTTCGAA-AC 1082
|||| ||| ||||||| | | ||| || | ||||||||||||| |||||||| || ||
Sbjct 942 CAAGAGTATTGTCTCTGGCAG-ACTTAA-TGTCATCGATGGAACTCCCACTTTT-AAGAC 998
Query 1083 CGCCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACAC 1142
|||||||| |||||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct 999 TGCCACATTCGCTGTGTTCGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACAC 1058
Query 1143 AGCTGGTCCAGCTAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGA-CTTATCTGTGT 1201
|||||||||| | || || ||||||||||| |||||||||||||| || || | | |
Sbjct 1059 AGCTGGTCCATCCAAACACCAAGCCGTAGCGCTAATGGTAAGCGCGGATCTCGCC-GCCT 1117
Query 1202 TCTACAAGT-GCACCATGGACGCTTTCCAAGATACAATGTACGCT-CATGCACAACGTCA 1259
| ||| || | || ||| |||| | |||||| || | |||| | || || ||||| ||
Sbjct 1118 TTTACC-GTTGTACAATGAACGCATACCAAGACACGCTTTACG-TGCACGCTCAACGCCA 1175
Query 1260 GTTTTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGT 1319
|| |||||||| || || | ||||| || ||||| || || || ||| | || |
Sbjct 1176 ATTCTACCGTGACTGCACCATTATGGGAACAGTCGATTTCATCTTCGGTAACTCAGC--T 1233
Query 1320 T--GTAT-TCCAAAAGTGC-GAGAT-CTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAAT 1374
| || | ||||||| ||| | ||| || ||||| || || |||||||| || || ||
Sbjct 1234 TCAGT-TCTCCAAAACTGCCG-GATTCTC-CCTCGCCGACCAATGAAAGGACAACAAAAC 1290
Query 1375 ACAATAACCGCTCAGGGCCGGAAAGATCCGAACCAA-AACACAGGAATTTCTATCCACAA 1433
||||| || ||||| || || | ||||||||| | ||||||||||| || || |||
Sbjct 1291 ACAATCACGGCTCAAGGACGTACTGATCCGAAC-ATGAACACAGGAATCTCAATTCACCG 1349
Query 1434 TTGTA-CTATCAAGCCTTT-GGATAACTTAACCGATATCCAA-ACATTCCTAGGCCGGCC 1490
||||| | ||| || | || | || |||||||| | || || || |||| || ||
Sbjct 1350 TTGTAAC-ATCTCTCCGCTCGG-TGACCTAACCGATGTT-AAGACGTTTTTAGGTCGACC 1406
Query 1491 TTGGAAGGATTTCTCTACAACGGTTATCATGAAGTCGT-TCATGGACAAATTCATCAACC 1549
|||||| ||||||| || || || || ||| | |||| | || | || | |||
Sbjct 1407 ATGGAAGAATTTCTCGACGACAGTGATAATGGACTCGTATT-TGCATGGGTTTGTTGACC 1465
Query 1550 CGAAAGGGTGGTTACCGTGGACAGGAGATACCGCGCCAGACACGATCTTTTACGCCGAGT 1609
|||||| |||||||||||||| |||||| | ||||| || || || ||||||| ||||
Sbjct 1466 GGAAAGGTTGGTTACCGTGGACCGGAGATTCGGCGCCGGATACTATATTTTACGGTGAGT 1525
Query 1610 ACTTA-AATTCCGG-GCCAGGAGCATCGACCAAGAACCGGGTTAAGTGGCAAGGG-TTGA 1666
| | | ||| |||| || || || ||||| ||||| | ||||||||| ||||| |||
Sbjct 1526 A-TAAGAATACCGGCGCT-GGTGCGTCGACAAAGAATAGAGTTAAGTGG-AAGGGATTGC 1582
Query 1667 AGACGTCTTTA-ACAAAGAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGC 1725
| |||||| || ||||||||| |||| |||||| |||||| |||| || |||||
Sbjct 1583 GGTT-TCTTTATAC---GAAGGAAGCGAATAGGTTTACCGTGAAAGCTTTCATCGACGG- 1637
Query 1726 AATAAC-TGG-TTGCCGGCTACCAAAGTTCCCTTCA 1759
| || ||| || ||||| || ||||| || ||||
Sbjct 1638 AGGAAGATGGCTT-CCGGCCACGAAAGTGCCGTTCA 1672
> Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1
Length=1849
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1399 GATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTAC 1439
|||||||| ||||||||||||||||||||||||||||||||
Sbjct 1401 GATCCGAATCAAAACACAGGAATTTCTATCCACAATTGTAC 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5