BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04960.1 Length=1933 Score E Sequences producing significant alignments: (Bits) Value Ahg487283 jgi|Araly1|487283|fgenesh2_kg.6__417__AT5G04960.1 2639 0.0 Ahg341207 jgi|Araly1|341207|fgenesh1_pg.C_scaffold_3000970 405 6e-112 Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 71.3 3e-11 > Ahg487283 jgi|Araly1|487283|fgenesh2_kg.6__417__AT5G04960.1 Length=1890 Score = 2639 bits (1429), Expect = 0.0 Identities = 1713/1847 (93%), Gaps = 31/1847 (2%) Strand=Plus/Plus Query 42 TCACAAACGAGAGGCC-GGTTAGGAGGAAATTACAAAAATGTCCTCCTACGGCAGACTCG 100 ||||| |||||||||| || |||||||||||||| |||||||||||||| |||||||| | Sbjct 25 TCACATACGAGAGGCCAGG-TAGGAGGAAATTACCAAAATGTCCTCCTATGGCAGACTTG 83 Query 101 ACGAGCATGAGCAAGCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATTGCCATCA 160 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 84 ACGAGCATGAGCAATCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATCGCCATTA 143 Query 161 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCGTCGTTGGAACCACAG 220 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 144 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCATCGTTGGAACCACAG 203 Query 221 CTCGCGATAACAGCAAGAAACCACCGACGGAGAATAACGGAGAGCCAATATCAGTCTCCG 280 || ||||||| |||||||| | || ||||||| ||||||||||||||| || ||||| | Sbjct 204 CTTACGATAACGGCAAGAAATCGCCAACGGAGAGTAACGGAGAGCCAATCTCCGTCTCGG 263 Query 281 TGAAAGCCCTGTGCGACGTGACATTGCACAAAGAAAAATGTTTCGAGACCCTTGGATCGG 340 |||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| ||| Sbjct 264 TGAAAGCCGTGTGCGACGTGACATTGCACAAAGACAAATGTTTTGAGACCATTGGAACGG 323 Query 341 CTCCAAACGCGAGCCGATC-AAGCCCAGAGGAGCTTTTCAAGTACGCCGTCAAAGTCACC 399 ||||||||||||||| | | || ||| |||||||||||||||||||| |||||| ||||| Sbjct 324 CTCCAAACGCGAGCC-AACTAAACCCGGAGGAGCTTTTCAAGTACGCAGTCAAAATCACC 382 Query 400 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 383 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 442 Query 460 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATCGGGCTAGCCGTTGATCAACTCAAC 519 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 443 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATTGGACTAGCCGTTGACCAACTCAAC 502 Query 520 --GA--A--A---CAAT------------GACGTCGTCCTTGAAGAACTTTGACGATCTA 558 || | | |||| ||||||| ||||||||| | | |||||||| Sbjct 503 GAGACGATGACGTCAATGAAAGACAAAACGACGTCGCCCTTGAAGAGCGTCGACGATCTC 562 Query 559 AGGACGTGGCTTAGCTCCGTGGGAACGTACCAAGAAACGTGTATGGATGCGTTAGTGGAA 618 |||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||| Sbjct 563 AGGACGTGGCTTAGCTCCGTGGAAACGTACCAAGAAACATGTATGGACGCATTAGTGGAA 622 Query 619 GCGAACAAACCAAGTTTAACGACTTTCGGAGAAAACCATTTGAAAAACTCGACGGAGATG 678 |||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 623 GCGAACAAACCAGGTTTGACAACTTTCGGTGAAAACCATTTGAAAAACTCGACGGAGATG 682 Query 679 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATCGCTGACACCGTTAAGTTT 738 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 683 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATAGCTGACACCGTTAAGTTT 742 Query 739 AGACGACGTCGTTTGTTGGAGACTGGTAACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 798 ||||||||||| ||| ||| || ||| |||||||||||||||||||||||||||||||| Sbjct 743 AGACGACGTCGGTTGATGGCTACCGGTGACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 802 Query 799 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTTGAA-GAAGAAAGCGACTATCGTGGT 857 ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| Sbjct 803 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTT-AAGGAAGAAAGCGACCATCGTGGT 861 Query 858 GGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGAGGCTTTAGCGGAAGTGGAGGA 917 ||| |||||||| || ||||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 862 GGCCAAAGACGGCTCAGGGAAGTATAGGACGATAGGTGAGGCTTTAGCGGAAGTGGAGGA 921 Query 918 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTAGAGAATGTTAG 977 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 922 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGAGAATGTTAG 981 Query 978 GGTTGAGAAGACGAAATGGAATGTTGTGATGGTTGGAGATGGACAAAGTAAGACTATCGT 1037 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 982 GGTTGAGAAGAAGAAATGGAATGTTGTGATGGTTGGAGATGGACAGAGTAAGACTATCGT 1041 Query 1038 CTCTGCTGGACTCAACTTCATCGATGGAACCCCCACTTTCGAAACCGCCACATTTGCTGT 1097 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1042 CTCTGCTGGACTCAACTTCATCGATGGAACACCCACGTTCGAAACCGCCACATTTGCTGT 1101 Query 1098 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACACAGCTGGTCCAGCTAA 1157 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || Sbjct 1102 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAGCTGGTCCAACCAA 1161 Query 1158 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTATCTGTGTTCTACAAGTGCACCAT 1217 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1162 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTGTCTGTGTTCTACAAGTGCACTAT 1221 Query 1218 GGACGCTTTCCAAGATACAATGTACGCTCATGCACAACGTCAGTTTTACCGTGATTGTGT 1277 ||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 1222 GGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTTTTACCGTGATTGTGT 1281 Query 1278 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAAGTGCGA 1337 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1282 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAATTGTGA 1341 Query 1338 GATCTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1397 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1342 GATCTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1401 Query 1398 AGATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1457 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1402 AGATCCGAACCAAAACACCGGAATCTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1461 Query 1458 CTTAACCGATATCCAAACATTCCTAGGCCGGCCTTGGAAGGATTTCTCTACAACGGTTAT 1517 | |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || Sbjct 1462 CCTAACCGATATCCAAACGTTCCTAGGCCGGCCTTGGAAGGACTTCTCCACAACGGTGAT 1521 Query 1518 CATGAAGTCGTTCATGGACAAATTCATCAACCCGAAAGGGTGGTTACCGTGGACAGGAGA 1577 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 1522 CATGAAGTCGTACATGGACAAATTTATCAACCCGAAAGGGTGGTTACCGTGGACAGGATA 1581 Query 1578 TACCGCGCCAGACACGATCTTTTACGCCGAGTACTTAAATTCCGGGCCAGGAGCATCGAC 1637 | |||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1582 TGCCGCACCATACACCATCTTTTACGCCGAATACTTAAATTCCGGGCCAGGAGCCTCGAC 1641 Query 1638 CAAGAACCGGGTTAAGTGGCAAGGGTTGAAGACGTCTTTAACAAAGAAGGAAGCAAATAA 1697 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1642 CAAGAACCGGGTTAAGTGGAAAGGGTTGAAGACGTCTTTAACAAATAAGGAAGCAAATAA 1701 Query 1698 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCTACCAAAGTTCCCTT 1757 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1702 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCAACCAAAGTTCCGTT 1761 Query 1758 CAACTCTGATTTTTGATATTTTTTGCTGGAAAA-GGCTGGTCTGAAAACTGATG-CATGG 1815 ||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| | | | Sbjct 1762 CAAATCTGATTTTTGATATTATTTGCCGGAAAAAGGCTGGTCTGAAAATTGATGGC-TAG 1820 Query 1816 CTAGTCGTTCTTTAATTTG-TTTATAACGAACATACAACATTCCCTT 1861 ||||||||||||||||||| ||| |||||||||||||| ||| |||| Sbjct 1821 CTAGTCGTTCTTTAATTTGGTTTCTAACGAACATACAATATTTCCTT 1867 > Ahg341207 jgi|Araly1|341207|fgenesh1_pg.C_scaffold_3000970 Length=1686 Score = 405 bits (219), Expect = 6e-112 Identities = 706/936 (75%), Gaps = 53/936 (6%) Strand=Plus/Plus Query 849 TATCGTGGTGGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGA-GGCTTTAGCGG 907 ||| ||||||||||| || || |||||||| ||| | ||||| || | |||||||| || Sbjct 765 TATTGTGGTGGCTAAGGATGGTTCGGGGAAGTATAGAACGATAAGT-AGGGCTTTAGAGG 823 Query 908 AAGTGGAGGAGAAGAATGAGAA-ACCTACGATTATATATGTGAAGAAAGGAGTTTATTTA 966 | ||| ||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 824 ATGTGCCTGAGAAGAGTGAGAAGA-GGACGATTATATATGTGAAGAAAGGAGTTTATTTT 882 Query 967 GAGAATGTTAGGGTTGAGAAGACGAAATGGAATGTTGT-GATGGTTGGAGATGGACAAAG 1025 |||||||| | ||| ||||| | || ||||||||||| | |||||||||||||| | || Sbjct 883 GAGAATGTGAAGGTGGAGAAAAAGATGTGGAATGTTGTTG-TGGTTGGAGATGGAGAGAG 941 Query 1026 TAAGACTATCGTCTCTG-CTGGACTCAACT-TCATCGATGGAACCCCCACTTTCGAA-AC 1082 |||| ||| ||||||| | | ||| || | ||||||||||||| |||||||| || || Sbjct 942 CAAGAGTATTGTCTCTGGCAG-ACTTAA-TGTCATCGATGGAACTCCCACTTTT-AAGAC 998 Query 1083 CGCCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACAC 1142 |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 999 TGCCACATTCGCTGTGTTCGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACAC 1058 Query 1143 AGCTGGTCCAGCTAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGA-CTTATCTGTGT 1201 |||||||||| | || || ||||||||||| |||||||||||||| || || | | | Sbjct 1059 AGCTGGTCCATCCAAACACCAAGCCGTAGCGCTAATGGTAAGCGCGGATCTCGCC-GCCT 1117 Query 1202 TCTACAAGT-GCACCATGGACGCTTTCCAAGATACAATGTACGCT-CATGCACAACGTCA 1259 | ||| || | || ||| |||| | |||||| || | |||| | || || ||||| || Sbjct 1118 TTTACC-GTTGTACAATGAACGCATACCAAGACACGCTTTACG-TGCACGCTCAACGCCA 1175 Query 1260 GTTTTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGT 1319 || |||||||| || || | ||||| || ||||| || || || ||| | || | Sbjct 1176 ATTCTACCGTGACTGCACCATTATGGGAACAGTCGATTTCATCTTCGGTAACTCAGC--T 1233 Query 1320 T--GTAT-TCCAAAAGTGC-GAGAT-CTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAAT 1374 | || | ||||||| ||| | ||| || ||||| || || |||||||| || || || Sbjct 1234 TCAGT-TCTCCAAAACTGCCG-GATTCTC-CCTCGCCGACCAATGAAAGGACAACAAAAC 1290 Query 1375 ACAATAACCGCTCAGGGCCGGAAAGATCCGAACCAA-AACACAGGAATTTCTATCCACAA 1433 ||||| || ||||| || || | ||||||||| | ||||||||||| || || ||| Sbjct 1291 ACAATCACGGCTCAAGGACGTACTGATCCGAAC-ATGAACACAGGAATCTCAATTCACCG 1349 Query 1434 TTGTA-CTATCAAGCCTTT-GGATAACTTAACCGATATCCAA-ACATTCCTAGGCCGGCC 1490 ||||| | ||| || | || | || |||||||| | || || || |||| || || Sbjct 1350 TTGTAAC-ATCTCTCCGCTCGG-TGACCTAACCGATGTT-AAGACGTTTTTAGGTCGACC 1406 Query 1491 TTGGAAGGATTTCTCTACAACGGTTATCATGAAGTCGT-TCATGGACAAATTCATCAACC 1549 |||||| ||||||| || || || || ||| | |||| | || | || | ||| Sbjct 1407 ATGGAAGAATTTCTCGACGACAGTGATAATGGACTCGTATT-TGCATGGGTTTGTTGACC 1465 Query 1550 CGAAAGGGTGGTTACCGTGGACAGGAGATACCGCGCCAGACACGATCTTTTACGCCGAGT 1609 |||||| |||||||||||||| |||||| | ||||| || || || ||||||| |||| Sbjct 1466 GGAAAGGTTGGTTACCGTGGACCGGAGATTCGGCGCCGGATACTATATTTTACGGTGAGT 1525 Query 1610 ACTTA-AATTCCGG-GCCAGGAGCATCGACCAAGAACCGGGTTAAGTGGCAAGGG-TTGA 1666 | | | ||| |||| || || || ||||| ||||| | ||||||||| ||||| ||| Sbjct 1526 A-TAAGAATACCGGCGCT-GGTGCGTCGACAAAGAATAGAGTTAAGTGG-AAGGGATTGC 1582 Query 1667 AGACGTCTTTA-ACAAAGAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGC 1725 | |||||| || ||||||||| |||| |||||| |||||| |||| || ||||| Sbjct 1583 GGTT-TCTTTATAC---GAAGGAAGCGAATAGGTTTACCGTGAAAGCTTTCATCGACGG- 1637 Query 1726 AATAAC-TGG-TTGCCGGCTACCAAAGTTCCCTTCA 1759 | || ||| || ||||| || ||||| || |||| Sbjct 1638 AGGAAGATGGCTT-CCGGCCACGAAAGTGCCGTTCA 1672 > Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 Length=1849 Score = 71.3 bits (38), Expect = 3e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 1399 GATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTAC 1439 |||||||| |||||||||||||||||||||||||||||||| Sbjct 1401 GATCCGAATCAAAACACAGGAATTTCTATCCACAATTGTAC 1441 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72638097215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5