BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04990.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939904 jgi|Araly1|939904|scaffold_600448.1 2206 0.0
Ahg478408 jgi|Araly1|478408|fgenesh2_kg.3__1109__AT3G10730.1 702 0.0
Ahg497464 jgi|Araly1|497464|fgenesh2_kg.532__1__AT3G10730.1 658 0.0
> Ahg939904 jgi|Araly1|939904|scaffold_600448.1
Length=1473
Score = 2206 bits (1194), Expect = 0.0
Identities = 1385/1475 (94%), Gaps = 22/1475 (1%)
Strand=Plus/Plus
Query 174 TGTGTAGTCAAACCAGATCAAATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGTAGTCAAACCAGATCAAATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG 60
Query 234 GCAGCGACTAGACGGACGCCGATTCTTGCCGGAGAGAAAAAATCAAACTTTGATTACCCT 293
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GCGGCGACTAGACGGACGCCGATTCTTTCCGGAGAGAAAAAATCAAACTTTGATTACCCG 120
Query 294 CAAAGCGAATCGCTTGCGAAC---GGTGGTGTTGGGGAAGCCGGTGGTACGAGTAGAGAT 350
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 CAAAGCGAATCGCTTGCGAACGGTGGTGGTGTTGGGGAAGCCGGTGGTACGAGCAGAGAT 180
Query 351 CTGAGCCGCGGTGAAGCTACCCTTGATCGATCTCAGGGACAAGATTTGGGTCCTGTGACG 410
|||||||||||||| |||| | ||||||| ||||| || |||||||||||||||||||||
Sbjct 181 CTGAGCCGCGGTGAGGCTATCGTTGATCGCTCTCACGGTCAAGATTTGGGTCCTGTGACG 240
Query 411 AGAAGGTCTGTTTCCGCTGCGACGGGGACTAATACCACCGCTACGCAGCGCCGGACGCGG 470
|| ||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 241 AGGAGGTCTGGTTCCGCTGCGACGGGGACTAATACCACCACCACGCAGCGCCGTACGCGG 300
Query 471 AAGGTTGCGACTCCTAAGTCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTTGCG 530
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 AAGGTTGCGACTCCTAAGCCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTCGCA 360
Query 531 AAGCAGCTTGGTGCGCTTTTGATCATTGTTGGGTTAATTCAATTGACGAGGAAGATGATT 590
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGCAGCTTGGGGCACTTTTGATCATTGTTGGGTTAATTCAATTGACGAGGAAGATGATT 420
Query 591 CTCAAGGCTTCTTCTCCGTCCTCTCCGATTTCTTCTTATGAAACGGAGATGGCGTTTTCG 650
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CTCAAGGCTTCGTCTCCGTCCTCTCCGATTTCTTCTTATGAAACGGGGATGGCGTTTTCG 480
Query 651 GGATTGGAAAGCCGAATTGCGGAAGTAGATGGTCTTGTTAAGGCTACGACGAATTCGATG 710
||||| |||||||||||||||||||| ||||||||||||||||| ||||||| | |||||
Sbjct 481 GGATTAGAAAGCCGAATTGCGGAAGTTGATGGTCTTGTTAAGGCCACGACGAGTACGATG 540
Query 711 CAGGTTCAAGTTGAATTGCTTGATAAGAAAATGGAGAGGGAAGCAAAAGTGCTTAGGCAA 770
||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 541 CAGGTTCAAGTTGAATTACTTGATAAGAAGATGGAGAGGGAAGCAAAAACGCTGAGGCAA 600
Query 771 GAAATCGAGAGGAAAGCTTCTGCATTTCAGAGTGAGTTGAAGAAGATAGAATCTAGAACT 830
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAATCGAGAGGAAAGCTTCTGTATTTCAGAGTGAGTTGAAGAAGATAGAATCTAGAACT 660
Query 831 GAGTCACTAGAGAAGTCTGTAGATGAAGTAAATGCTAAACCTTGGGTGACGAAAGATGAG 890
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 GAGTCACTAGAGAAGTCTGTAGATGAAGTAAATGCTAAATCTTGGGTGACGAAAGATGAG 720
Query 891 TTAGAGAGGATTTATGAGGAACTGAAGAAGGGGAATGTTGATGATTCTGCTTTTAGTGAG 950
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 721 TTAGAGAGGATTTATGAGGAACTGAAGAAGGGTAATGTCGATGATTCTGCTTTTAGTGAG 780
Query 951 ATTAGCATTGATGAATTGAGGGCTTATGCTCGTGATATTATGGAGAAAGAGATTGA-AAA 1009
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 781 ATTAGCATTGATGAATTGAGGGCTTATGCTCGTGACATTGTGGAGAAAGAGATTGAGAAA 840
Query 1010 GCATGCTGCTGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTTTGT 1069
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 -CATGCTGCAGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTTTGT 899
Query 1070 GATGGAGCATTCAGATCCTTATCTTGTTGGTAAAGGGAGTAGCTGGTTTGCGACTACCAT 1129
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GATGCAGCATTCAGATCCTTATCTTGTTGGAAAAGGGAGTAGCTGGTTTGCGACTACCAT 959
Query 1130 GCGGCGCGCTCATACGAATGCGGTTAAGATGTTATCTCCGAGCTTCGGTGAGCCTGGACA 1189
||| ||||||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 960 GCGACGCGCTCATACCAATGCGGTTAAGATGTTATCTCCGAGTTTTGGGGAGCCTGGACA 1019
Query 1190 ATGTTTTCCTCTGAAAGGTAGCGAGGGCTATGTGCAAATCAGGCTGAGAGGACCAATCAT 1249
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGTTTTCCTCTGAAAGGTAGTGATGGCTATGTGCAAATCAGGCTGAGAGGACCAATCAT 1079
Query 1250 ACCAGAGGCTTTCACATTGGAGCATGTAGCTAAGAGTGTAGCCTACGACAGATCGAGTGC 1309
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 ACCAGAGGCTTTCACATTGGAGCATGTAGCTAAGAGTGTAGCTTACGACAGATCGAGTGC 1139
Query 1310 TCCAAAAGATTGCCGTGTATCAGGATCCCTGCAAGGAC-----------C-GGAATCCTC 1357
|||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 1140 TCCAAAAGATTGCCGTGTATCAGGATGGCTGCAAGGACAAGGAAAAGGACTGGAATCCTC 1199
Query 1358 AGCGGAGACA-GAGAACATGCAACTTCTAACAGAGTTCACTTACGACCTAGACAGGTCGA 1416
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGCGGAGA-ATGAGAACATGCAACTTCTAACAGAGTTCACTTACGACCTAGACAGGTCGA 1258
Query 1417 ACGCACAAACATTCAACATCTTAGAGTCATCAAGCTCTGGTCTAATCGATACTGTCAGGC 1476
||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 1259 ACGCACAAACATTCAACATCTTAGACACATCAAACTCTGGTCCAATCGATACTGTCAGGC 1318
Query 1477 TAGACTTCACCTCGAACCACGGAAGCGACTCGCACACTTGCATCTACCGGTTCAGGGTTC 1536
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGATTTCACCTCCAACCATGGAAGCGACTCGCACACTTGCATCTACCGGTTCAGGGTTC 1378
Query 1537 ATGGGCGTGCGCCAGACCCGGTTCCTGTTGTGGGAACGAATCTTGATCAGGACTCTTCAC 1596
| |||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1379 ACGGGCGTGCATCAGACCCGGTCCCTGTTGTGGAAACGAGTCTTGATCAGGACTCTTCAC 1438
Query 1597 CTGAAAGTGAATAAA-AC-C-TCTTCTGTTTTGTA 1628
||| ||||||||||| | | |||||||| |||||
Sbjct 1439 CTGGAAGTGAATAAACAAACATCTTCTGTATTGTA 1473
> Ahg478408 jgi|Araly1|478408|fgenesh2_kg.3__1109__AT3G10730.1
Length=1539
Score = 702 bits (380), Expect = 0.0
Identities = 1067/1387 (77%), Gaps = 94/1387 (7%)
Strand=Plus/Plus
Query 195 ATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG-GCAGCGACTAGACGGACGCC 253
|||||||||||||||||||| |||||||||| | | || | || | ||| ||||||||
Sbjct 7 ATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAG-GGCAATTAGGCGGACGCC 65
Query 254 GATTCT-TGCCGGAGAGAAAAAATCAAACTTTGATTACCCTCAAAGCGAATCGCTTGCGA 312
| |||| | |||| ||||| ||||| || ||||||| ||| | |||||||| | ||| |
Sbjct 66 GGTTCTCT-CCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCATGCCA 124
Query 313 ACGGTGG-TGTTGG-G-G-AAGCCGGTGGTACG-AGTAGAGATCTGAGCCGCGGTGAAGC 367
| | || |||| | | ||| ||||||| | || ||||||| ||| || ||
Sbjct 125 A-TGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAG-GATCTGATTCGCTCCGAGGC 182
Query 368 TACC-CTTGATCGATCTCAGGGA-C-AAGATTTGGGTCCTGTGACGA-GAAGGTCTGTTT 423
| || | ||| ||||| | | | | || | ||||||||||| | ||| || | |
Sbjct 183 TGCCGC-TGAGAGATCT-A-ACACCTACGACGTCGGTCCTGTGACTAGGAA-ATCGGGAT 238
Query 424 CCGCTGCGACGGGGACTAATACCACCGCTACGCAGCGCCGGACGCGGAAGGT-TGC-GAC 481
|| | ||||||||||||||||| ||| | |||||||| || |||||||| || | | |
Sbjct 239 CCACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGAACGCGGAA-GTCT-CAGGG 296
Query 482 TCCTAAGTCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTTGCGAAGCAGCTTGG 541
|||| | || || | || ||||||||||||||| ||| |||| |||||||| ||||
Sbjct 297 GAATAAGACAGATAAGGGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGG 356
Query 542 TGCGCTTTTGATCA-TTGTTGGGTTAATTCAATTGACGAGGAAGA-TGA-TTCTCAAGGC 598
|| |||||| | | |||||||||| |||||||||| ||||| | ||| || | ||||
Sbjct 357 GGCTCTTTTG-TTACTTGTTGGGTTGATTCAATTGATTAGGAA-ATTGACTT-TGAAGGA 413
Query 599 TTCTTCTCCGTCCTCTCCG-ATTTCTTCTTA-TGAAACGGAGATGGCGTTTTCGGGATTG 656
||| |||| || ||| || ||||| | | ||||||||| |||| | |||||| ||||
Sbjct 414 TTCGTCTCTATCTTCTTCGAATTTC--CCAATTGAAACGGAAATGGTGCTTTCGGAATTG 471
Query 657 GAAAGCCGAATTGCGGAAGTAGATGGTCTT-GTTAAGGCTACGACGAA-TTCGATGCAGG 714
|| || || ||| ||| || |||||| || || ||| |||| ||||| | ||||||||
Sbjct 472 GAGAGTCGGATTTCGGCTGTTGATGGT-TTGGTAAAGACTACTACGAAGAT-GATGCAGG 529
Query 715 TTCAAGTTGAATTGCTTGATAAGAAAATGGAGAGGGAAGCAAAAGTGC-TT-AGGCAAGA 772
||||||||||||| ||||||||||| ||||| || ||| | ||| || || |||| |||
Sbjct 530 TTCAAGTTGAATTTCTTGATAAGAAGATGGAAAGCGAATC--AAGAGCATTGAGGC-AGA 586
Query 773 -AATCGAGAGGAAAGCTTCTGCATTTCAGAGTGAGTTGAAGAAGATAGAATCT-AGAACT 830
|| || | | ||||||| || ||||||| |||||||||| |||| ||| || ||
Sbjct 587 CGATAGATTCCACATCTTCTGCGTTGCAGAGTGGGTTGAAGAAGGTAGAGTCTAAG-ACG 645
Query 831 GAGTCACTAG-AGAAGTCTGTAGATGAAG-TAAATGCTAAACCTTGGGTGACGAAAGATG 888
||| | | | || || ||||||| || ||||||||||||||| |||| | | ||| |
Sbjct 646 GAGAGA-TTGCAGGTTTCCGTAGATG-AGTTAAATGCTAAACCTTTGGTGTCTAGAGAGG 703
Query 889 AGTTAGAGAGGA-TTTATGAGGAACTGAAGAAGGGGAATGTTGATGATTCTGCTTTTAGT 947
| ||||||| || |||| ||||| |||||||||| || | | ||||||||| |
Sbjct 704 AATTAGAGA-GAGTTTACGAGGAGTTGAAGAAGGGTAAGGCCGGTGATTCTGC------T 756
Query 948 GAGATTAGCATTGATGAATTGAGGGCTTATGCTCGTGATATTA-TGGAGAAAGAGATTGA 1006
| ||| |||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 757 --G-TTAACATTGATGAATTGAGGGCTTATGCTCGTGACGT-AGTGGAGAAAGAGATTGG 812
Query 1007 AAAGCATGCTGCTGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTT 1066
|||||||||||||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct 813 AAAGCATGCTGCTGATGGCCTTGGGCGAGTAGACTATGCGTTAGCGTCTGGTGGGGCTTT 872
Query 1067 TGTGATGGAGCATTCAGATCC-TTATCTTGTTGGTAAA-GGGAGTAGCTGGTTTGCGACT 1124
||| |||| |||||| ||||| || ||||||||| ||| ||| ||| ||||||| |||
Sbjct 873 TGTAATGGGGCATTCGGATCCGTT-TCTTGTTGG-AAATGGGGGTATTTGGTTTGGGACA 930
Query 1125 ACCATGCGGCGCGCTCATA-CGAATGCGGTTAAGATGTTATCTCCGAGCTTCGGTGAGCC 1183
| || |||||| | ||||| | || ||||||||||||||| ||||||| ||||| |||||
Sbjct 931 AGCAGGCGGCGGGTTCATAGCAAA-GCGGTTAAGATGTTAACTCCGAGTTTCGGGGAGCC 989
Query 1184 TGGACAATGTTTTCCTCTGAAAGGTAGCGAGGGCTATGTGCAAATCAGGCTGAGAGGACC 1243
|||||| ||||||||||||||||| ||| | |||||||| | | ||||||| |||| |||
Sbjct 990 TGGACAGTGTTTTCCTCTGAAAGGAAGCAATGGCTATGTTCTAGTCAGGCTAAGAGCACC 1049
Query 1244 AATCATACCAGAGGCT-TTCACATTGGAGCATGTAGCTAAGAG-TGTAGCCTACGACAGA 1301
||| || |||||||| || || ||||||||||| || || | |||||| || ||||||
Sbjct 1050 AATAATTCCAGAGGCCGTT-ACCTTGGAGCATGTCTCTGAG-GCTGTAGCGTATGACAGA 1107
Query 1302 TCGAGTGCTCCAAAAGATTGCCGTGTATCAGGATCCCTGCAAG-GACCG-GAATCCTCAG 1359
||||| || ||||| |||||||| |||||||||| || | | ||| || | | |
Sbjct 1108 TCGAGCGCCCCAAAGGATTGCCGGGTATCAGGATGGCT--AGGTGACATAGA-TA-T--G 1161
Query 1360 CGGAGACAGAGAAC-ATGCA-ACTTCTAACAGAGTTCACTTACGACCTAGACAGGTCGAA 1417
| |||| || ||| |||| | |||| ||||| |||| ||||||| |||||||||| ||
Sbjct 1162 -G-AGACTGA-AACCATGCCCA-TTCTTACAGAATTCAGTTACGACTTAGACAGGTCCAA 1217
Query 1418 CGCACAAACATTCAACATCTT-AGAGTCA--TCAAGCTCTGGTCTAATCGATACTGTCAG 1474
||||| |||||| |||| | |||||| ||| || || || || | ||||||||
Sbjct 1218 TGCACAGACATTCGACAT-TGCAGAGTCTGCTCAT--TCGGGACTTGTCAACACTGTCAG 1274
Query 1475 GCTAGACTTCACCTCGAACCACGGAAGCGACT-CGCACACTTGCATCTACCGGTTCAGGG 1533
||||||||||| || ||||| |||||| || | ||||||||||||||||| |||||||
Sbjct 1275 GCTAGACTTCAATTCCAACCATGGAAGCT-CTTCACACACTTGCATCTACCGCTTCAGGG 1333
Query 1534 TTCATGG 1540
|||||||
Sbjct 1334 TTCATGG 1340
> Ahg497464 jgi|Araly1|497464|fgenesh2_kg.532__1__AT3G10730.1
Length=1495
Score = 658 bits (356), Expect = 0.0
Identities = 1063/1391 (76%), Gaps = 102/1391 (7%)
Strand=Plus/Plus
Query 195 ATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG-GCAGCGACTAGACGGACGCC 253
|||||||||||||||||||| |||||||||| | | || | || | ||| ||||||||
Sbjct 7 ATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAG-GGCAATTAGGCGGACGCC 65
Query 254 GATTCT-TGCCGGAGAGAAAAAATCAAACTTTGATTACCCTCAAAGCGAATCGCTTGCGA 312
| |||| | |||| ||||| ||||| || ||||||| ||| | |||||||| | ||| |
Sbjct 66 GGTTCTCT-CCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCATGCCA 124
Query 313 ACGGTGG-TGTTGG-G-G-AAGCCGGTGGTACG-AGTAGAGATCTGAGCCGCGGTGAAGC 367
| | || |||| | | ||| ||||||| | || ||||||| ||| || ||
Sbjct 125 A-TGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAG-GATCTGATTCGCTCCGAGGC 182
Query 368 TACC-CTTGATCGATCTCAGGGA-C-AAGATTTGGGTCCTGTGACGA-GAAGGTCTGTTT 423
| || | ||| ||||| | | | | || | ||||||||||| | ||| || | |
Sbjct 183 TGCCGC-TGAGAGATCT-A-ACACCTACGACGTCGGTCCTGTGACTAGGAA-ATCGGGAT 238
Query 424 CCGCTGCGACGGGGACTAATACCACCGCTACGCAGCGCCGGACGCGGAAGGT-TGC-GAC 481
|| | |||||||| |||||||| ||| | |||||||| || |||||||| || | | |
Sbjct 239 CCACCGCGACGGGCACTAATACAACCACCACGCAGCGTCGAACGCGGAA-GTCT-CAGGG 296
Query 482 TCCTAAGTCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTTGCGAAGCAGCTTGG 541
|||| | || || | || ||||||||||||||| ||| |||| |||||||| ||||
Sbjct 297 GAATAAGACAGATAAGGGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGG 356
Query 542 TGCGCTTTTGATCA-TTGTTGGGTTAATTCAATTGACGAGGAAGA-TGA-TTCTCAAGGC 598
|| |||||| | | ||||||| || |||||||||| ||||| | ||| || | ||||
Sbjct 357 GGCTCTTTTG-TTACTTGTTGGATTGATTCAATTGATTAGGAA-ATTGACTT-TGAAGGA 413
Query 599 TTCTTCTCCGTCCT-C-TCCGATTTCTTCTTA-TGAAACGGAGATGGCGTTTTCGGGATT 655
||| |||| | || | || ||||| | | ||||||||| |||| | |||||| |||
Sbjct 414 TTCGTCTCTAT-CTGCTTCTAATTTC--CCAATTGAAACGGAAATGGTGCTTTCGGAATT 470
Query 656 GGAAAGCCGAATTGCGGAAGTAGATGGTCTT-GTTAAGGCTACGACGAA-TTCGATGCAG 713
||| || || ||| ||| || |||||| || || ||| |||| ||||| | |||||||
Sbjct 471 GGAGAGTCGGATTTCGGCTGTTGATGGT-TTGGTAAAGACTACTACGAAGAT-GATGCAG 528
Query 714 GTTCAAGTTGAATTGCTTGATAAGAAAATGGAGAGGGAAGCAAAAGTGC-TT-AGGCAAG 771
|||||||||||||| ||||||||||| ||||| || ||| | ||| || || |||| ||
Sbjct 529 GTTCAAGTTGAATTTCTTGATAAGAAGATGGAAAGCGAATC--AAGAGCATTGAGGC-AG 585
Query 772 A-AATCGAGAGGAAAGCTTCTGCATTTCAGAG-TGAGTTGAAGAAGATAGAATCT-AGAA 828
| || || | | |||||| || ||||| || |||||||||| |||| ||| || |
Sbjct 586 ACGATAGATTCCACATCTTCTGTGTTGCAGAGTTG-GTTGAAGAAGGTAGAGTCTAAG-A 643
Query 829 CTGAGTCACTAG-AGAAGTCTGTAGATGAAG-TAAATGCTAAACCTTGGGTGACGAAAGA 886
| ||| | | | || || ||||||| || ||||||||||||||| |||| | | |||
Sbjct 644 CGGAGAGA-TTGCAGGTTTCCGTAGATG-AGTTAAATGCTAAACCTTTGGTGTCTAGAGA 701
Query 887 TGAGTTAGAGAGGA-TTTATGAGGAACTGAAGAAGGGGAATGTTGATGATTCTGCTTTTA 945
|| ||||||| || |||| ||||| |||||||||| || || | |||||||| |
Sbjct 702 GGAATTAGAGA-GAGTTTACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTG-----A 755
Query 946 GTGAGATTAGCATTGATGAATTGAGGGCTTATGCTCGTGATATTA-TGGAGAAAGAGATT 1004
| ||| |||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 756 -T---CTTAACATTGATGAATTGAGGGCTTATGCTCGTGACGT-AGTGGAGAAAGAGATT 810
Query 1005 GAAAAGCATGCTGCTGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCT 1064
| ||||||||| |||||||||||||||||||| || ||||| || || |||||||| |||
Sbjct 811 GGAAAGCATGCCGCTGATGGCCTTGGCCGAGTAGACTATGCGTTAGCGTCTGGTGGGGCT 870
Query 1065 TTTGTGATGGAGCATTCAGATCC-TTATCTTGTTGGTAAAG-GGAG-TAGCTGGTTTGCG 1121
||||| |||| |||||| ||||| || ||||||||| || | |||| || |||||| ||
Sbjct 871 TTTGTAATGGGGCATTCGGATCCGTT-TCTTGTTGG-AA-GTGGAGGTAATTGGTTT-CG 926
Query 1122 -ACTACCATGCGGCGCGCTCATA-CGAATGCGGTTAAGATGTTATCTCCGAGCTTCGGTG 1179
|| | || |||||| | ||||| | || ||||||||||||||| ||||||| ||||| |
Sbjct 927 GACAAGCAGGCGGCGGGTTCATAGCAAA-GCGGTTAAGATGTTAACTCCGAGTTTCGGGG 985
Query 1180 AGCCTGGACAATGTTTTCCTCTGAAAGGTAGCGAGGGCTATGTGCAAATCAGGCTGAGAG 1239
|||||||||| ||||||||||||||||| ||| | |||||||| | | ||||||| ||||
Sbjct 986 AGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCAATGGCTATGTTCTAGTCAGGCTAAGAG 1045
Query 1240 GACCAATCATACCAGAGGCT-TTCACATTGGAGCATGTAGCTAAGAG-TGTAGCCTACGA 1297
|||||| || |||||||| || || ||||||||||| || || | |||||| || ||
Sbjct 1046 CACCAATAATTCCAGAGGCCGTT-ACCTTGGAGCATGTCTCTGAG-GCTGTAGCGTATGA 1103
Query 1298 CAGATCGAGTGCTCCAAAAGATTGCCGTGTATCAGGATCCCTGCAAG-GACCG-GAATCC 1355
||||||||| || ||||| |||||||| |||||||||| || | | ||| || |
Sbjct 1104 CAGATCGAGCGCCCCAAAGGATTGCCGGGTATCAGGATGGCT--AGGTGACATAGA-TA- 1159
Query 1356 TCAGCGGAGACAGAGAAC-ATGCA-ACTTCTAACAGAGTTCACTTACGACCTAGACAGGT 1413
| | | |||| || ||| |||| | |||| ||||| |||| ||||||| |||||||||
Sbjct 1160 T--G-G-AGACTGA-AACCATGCCCA-TTCTTACAGAATTCAGTTACGACTTAGACAGGT 1213
Query 1414 CGAACGCACAAACATTCAACATCTT-AGAGTCA--TCAAGCTCTGGTCTAATCGATACTG 1470
| || ||||| |||||| |||| | |||||| ||| || || || || | ||||
Sbjct 1214 CCAATGCACAGACATTCGACAT-TGCAGAGTCTGCTCAT--TCGGGACTTGTCAACACTG 1270
Query 1471 TCAGGCTAGACTTCACCTCGAACCACGGAAGCGACT-CGCACACTTGCATCTACCGGTTC 1529
||||||||||||||| || ||||| |||||| || | ||||||||||||||||| |||
Sbjct 1271 TCAGGCTAGACTTCAATTCCAACCATGGAAGCT-CTTCACACACTTGCATCTACCGCTTC 1329
Query 1530 AGGGTTCATGG 1540
|||||||||||
Sbjct 1330 AGGGTTCATGG 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5