BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05000.2
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487289 jgi|Araly1|487289|fgenesh2_kg.6__423__AT5G05000.1 1561 0.0
> Ahg487289 jgi|Araly1|487289|fgenesh2_kg.6__423__AT5G05000.1
Length=1161
Score = 1561 bits (845), Expect = 0.0
Identities = 963/1020 (94%), Gaps = 8/1020 (1%)
Strand=Plus/Plus
Query 36 GTAAGGATTTGTGTCCATGGCAGCTTTGCAAACGCTTCGTGAATGGATCGGTATCCAGCA 95
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 GTAAGGATTTGTGTCCATGGCAGCTTTGCAAACGCCTCGTGAATGGATCGGTATCCAGCA 179
Query 96 GTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTATAAAGAAGAGGA 155
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 GTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTTTAAAGAAGAGGA 239
Query 156 TGTGAGCTCGCTAACGGTCCTTGTAATGGGGAAAGGTGGTGTTGGAAAGTCATCAACTGT 215
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 240 TGTGAGCTCGCTAACGGTCCTTGTAATGGGCAAAGGCGGTGTTGGAAAGTCATCAACTGT 299
Query 216 GAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAG 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAG 359
Query 276 GCCTACCTTGGTCTCTCGCACAAGATCGGGATTTACATTGAATATCATCGACACTCCTGG 335
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCCTACCTTGGTCTCCCGCTCAAGATCGGGATTTACATTGAATATCATCGACACTCCTGG 419
Query 336 TCTTATTGAGGGAGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTTCTCCT 395
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TCTTATTGAGGGGGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTCCTCCT 479
Query 396 CAACATGACTATAGATGTGCTACTATACGTAGACCGTTTGGATGTGTACCGGGTGGATGA 455
||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 480 CAACATGACTATAGATGTGCTACTATATGTAGACCGTTTGGATGTATATAGGGTGGATGA 539
Query 456 CCTTGATAGGCAAGTTGTCGGTGCTATAACTGATGCATTTGGTAAAGAGATATGGAAGAA 515
||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||
Sbjct 540 CCTTGATAGGCAAGTTGTCAGTGCTATAACCGATGCATTTGGAAAAGAGATATGGAAAAA 599
Query 516 GTCTGCTCTTGTTCTCACCCATGCTCAGTTCTCTCCACCAGACGGGTTAAATTATAACCA 575
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 600 GTCTGCTCTTGTTCTCACACATGCTCAGTTCTCTCCGCCAGACGGGTTAAATTATAATCG 659
Query 576 CTTTGTCTCCAAAAGATCTAATGCTCTTCTAAAAGTTATCCAG-ACAGGCGCTCAACTGA 634
||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||
Sbjct 660 CTTTGTCTCCAGAAGATCTGATGCTCTTCTAAAAGTTATCC-GTACAGGCGCCCAACTGA 718
Query 635 AGAAACAGGATTTGCAGGGTTTTTCTATTCCTGTCATTCTTGTTGAGAACAGCGGAAGAT 694
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 719 AGAAACAGGATTTGCAGGGTTCATCTACACCCATCATTCTTGTTGAGAACAGCGGAAGAT 778
Query 695 GCCATAAGAACGA-AAGCGATGAAAAGATTCTTCCATG-CGGGACTAGTTGGATTCCCAA 752
| ||||| || || || ||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 779 GTCATAAAAATGACAA-CGATGAAAAGATTCTTCCA-GACGGGACTAGCTGGATTCCCAA 836
Query 753 TCTGTTCAACAAAATCACAGAGATCTCTTTTAATGGCAACAAGGCGATTCATGTTGACAA 812
||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 837 TCTACTCAACACAATCACAGAGATCTCTTTTAACGGCAACAAGGCGATTCACGTTGACAA 896
Query 813 GAAACTGGTCGAAGGGCCAAACCCAAA-CGAAAGAGGaaaaaaaCTGATTCCTTTAATGT 871
||||||||| ||||||||||||||||| | |||||||||| | |||||||||||| || |
Sbjct 897 GAAACTGGTGGAAGGGCCAAACCCAAATC-AAAGAGGAAAGAGACTGATTCCTTTGATCT 955
Query 872 TTGCATTCCAATACTTGCTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTT 931
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTGCATTCCAGTACTTGTTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTA 1015
Query 932 CGAGAGAGAGTAAACCGGCGTGGGAGCTGCGAGACTCCGGTTTAGCAAGTCGAAGGTCTT 991
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1016 CTAGAGAGAGTAAACCGGCGTGGGAGCTGCGGGACTCCGGTTTAGCAAGTCGAAGGTCTT 1075
Query 992 GAGTTGTGGACACGAGTTTTGTTTGGTTTGTTTGTCTATCTGAGAGATTGTTCTGTAGTT 1051
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGTTGTTGACACGAGTTTTGTTTGGTTTGTTTGTCTATCTGAGAGATTGTTCTGTAGTT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5