BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05010.1
Length=2059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939906 jgi|Araly1|939906|scaffold_600450.1 2617 0.0
Ahg493892 jgi|Araly1|493892|fgenesh2_kg.7__3325__AT5G40855.1 178 2e-43
> Ahg939906 jgi|Araly1|939906|scaffold_600450.1
Length=1626
Score = 2617 bits (1417), Expect = 0.0
Identities = 1550/1615 (96%), Gaps = 6/1615 (0%)
Strand=Plus/Plus
Query 144 AATCAAAATGGTTGTGCTTGCTGCTGCCATTGTGGTCAAGTCTGGGAAAGTGATTGTTTC 203
|||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 15 AATCAAAATGGTCGTGCTTGCTGCTTCCATTGTGGTCAAGTCTGGGAAAGTTCTTGTTTC 74
Query 204 CAGACACTATGTGGATATGTCCCGTATCAGAATCGAAGGTCTACTTGCAGCTTTTCCTAA 263
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 75 CAGACAATATGTGGATATGTCCCGTATCAGAATCGAAGGTCTGCTTGCAGCTTTTCCTAA 134
Query 264 GCTGGTTGGAATGGGAAAGCAGCATACCTATATCGAGACGGAGAATGTGCGATATGTTTA 323
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 135 GCTGGTTGGAATGGGAAAGCAGCATACCTATATTGAGACAGAGAATGTCCGATATGTATA 194
Query 324 TCAGCCTATTGAAGCTCTGTTCCTGCTTCTTGTTACAACTAAGCAGAGTAACATTCTAGA 383
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TCAGCCTATTGAATCTCTGTTCCTGCTTCTTGTTACAACTAAGCAGAGTAACATTCTAGA 254
Query 384 AGACCTGGCCACCCTTACTTTGCTCTCCAAACTTGTACCTGAGTATTCCATGTCTTTAGA 443
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AGATCTGGCCACCCTCACATTGCTCTCCAAACTTGTACCTGAGTATTCCATGTCTTTAGA 314
Query 444 TGAAGAAGGGATTTCCAGGGCATCTTTTGAGCTCATATTTGCATTTGATGAAGTCATATC 503
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 315 TGAAGAAGGGATTTCCAGGGCTTCTTTTGAGCTGATATTTGCATTTGATGAAGTCATATC 374
Query 504 TCTTGGGCACAAGGAAAGTGTGACAGTTGCCCAGGTGAAGCAGTATTGTGAAATGGAAAG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TCTTGGGCACAAGGAAAGTGTGACAGTTGCCCAGGTGAAGCAGTATTGTGAAATGGAAAG 434
Query 564 TCATGAGGAGAAGTTGCATAAACTGGTTATGCAGAGCAAGATCAATGACACTAAGGACGT 623
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 435 TCATGAGGAGAAGTTGCATAAACTGGTAATGCAGAGCAAGATCAATGACACTAAAGACGT 494
Query 624 GATGAAGCGTAAGGCTAATGAGATTGACAAAAGCAAGATTGAAAAGAATAAGCCAGGAGG 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 495 GATGAAGCGTAAGGCTAATGAGATTGACAAAAGCAAGATTGAAAAGAATAAGCC---AGG 551
Query 684 ATTTTCGTCCATGGGTTCAATGGGATCTGGAAGACTTGAAAGTGGTTTCAATGAATTGAG 743
|| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 552 ATATTCGTCCATTAGTTCAATGGGATCTGGAAGACTTGAAAGTAGTTTCAGTGAATTGGG 611
Query 744 CATATCCA---GTGGTGGCGGCGGTGGTTATGGAAGTGGTTCTGGGTTTGGCATGATTTC 800
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 612 CATATCCAGTGGTGGTGGTGGCGGTGGTTTTGGAAGTGGTTCTGGGTTTGGCATGATTTC 671
Query 801 AGATGTCGACCCTATCAATACCAAACCAAAAGATCGATCACGGTCTTCTGTTACTGCTCC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGATGTCGACCCTATCAATACCAAACCAAAAGATCGATCACGGTCTTCTGTTACTGCTCC 731
Query 861 TCCTAAGAGTTCTGGCATGAAACTTGGCAAGTCGGGAAAGAACCAGTTAATGGAGTCCCT 920
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 732 TCCTAAGAGTTCTGGCATGAAACTTGGCAAGTCGGGCAAGAACCAGTTAATGGAGTCCCT 791
Query 921 TAAAGCAGAAGGTGAAGACGTCATTGAAGATGTTAAGCCTACTGGCCAATCCAAAGCAGC 980
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TAAAGCAGAAGGTGAAGACATCATTGAAGATGTTAAGCCTACTGGCCAATCCAAAGCAGC 851
Query 981 TGCCCCACCTCCAACTGATCCTTTCACATTAACTGTTGAAGAGAAGCTCAATGTTGCATT 1040
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 852 TGCCCCTCCTCCAACTGATCCTTTCACATTAACTGTCGAAGAGAAGCTCAATGTTGCATT 911
Query 1041 GAGACGAGATGGTGGACTTAGTAGCTTTGATATGCAGGGAACCCTGTCACTTCAAATTCT 1100
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 912 GAGACGAGATGGTGGACTCAGTAGCTTTGATATGCAGGGAACCCTATCACTTCAAATTCT 971
Query 1101 TAACCAAGAAGATGGATTTGTCCAAGTCCAGATTGCAACCGGTGAAAATCCCGAAATTCT 1160
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 972 TAACCAAGAAGATGGATTTGTCCAAGTCCAGATCGCAACCGGTGAAAATCCCGAAATTCT 1031
Query 1161 TTTCAAGACCCATCCCAACATCAACCGAGATATGTTCAATAATGAGAATATTCTAGGGCT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TTTCAAGACCCATCCCAACATCAACCGAGATATGTTCAATAATGAGAATATTCTAGGGCT 1091
Query 1221 GAAGAGACCTGATCAGCCATTTCCCACTGGTCAAGGTGGAGATGGTGTTGGTCTTCTCAG 1280
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GAAGAGACCTGATCAGCCCTTTCCCACTGGTCAAGGTGGAGATGGTGTTGGTCTTCTCAG 1151
Query 1281 GTGGAGAATGCAAAGAGCAGACGAGTCTATGGTGCCACTAACAATAAACTGCTGGCCTTC 1340
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1152 GTGGAGAATGCAAAGAGCAGACGAGTCAATGGTGCCACTAACAATAAACTGCTGGCCTTC 1211
Query 1341 AGTCTCTGGAAACGAGACATATGTCAGCCTCGAGTACGAAGCCTCGTCCATGTTTGATCT 1400
|||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 1212 AGTCTCTGGAAATGAGACATATGTCAGCCTCGAGTATGAAGCGTCATCCATCTTTGATCT 1271
Query 1401 GACTAATGTCATCATCTCCGTACCACTTCCTGCTCTGAGAGAGGCACCAAGCGTTAGACA 1460
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1272 GACGAATGTAATCATCTCCGTACCACTTCCTGCACTGAGAGAGGCACCAAGCGTTAGACA 1331
Query 1461 ATGCGATGGGGAGTGGAGGTACGACCCAAGAAATTCTGTTCTGGAATGGTCTATACTACT 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1332 ATGCGATGGGGAGTGGAGGTACGACCCAAGAAATTCTGTTCTGGAATGGTCTATACTTCT 1391
Query 1521 TATTGACAACTCCAACCGCAGTGGCTCAATGGAGTTTGTTGTGCCTCCAGTGGATTCATC 1580
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1392 TATTGACAACTCCAACCGCAGTGGGTCAATGGAGTTTGTTGTGCCACCAGTGGATTCATC 1451
Query 1581 GGTGTTCTTCCCCATCTCTGTTCAGTTTGCAGCGACAAGTACCTACAGTGGCTTGAAGGT 1640
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1452 GGTGTTCTTCCCCATCTCTGTTCAGTTTGCAGCCACAAGTACCTACAGTGGCTTGAAGGT 1511
Query 1641 GACTGGAATGATTCCTCTGAGAGGAGGTGGTGGTGCGACTCCTAGGTTTGTGCAGAGGAC 1700
|||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1512 GACTGGAATGATACCTCTGAGAGGCGGTGGTGGTGCGATTCCAAGGTTTGTGCAGAGGAC 1571
Query 1701 GCAGCTGATTGCCCAGAACTATCAAGTCATATGAAACACTCCTTTGGGGGCATCG 1755
|||||||||||| ||||| || |||||||||||| || ||||||| || || |||
Sbjct 1572 GCAGCTGATTGCACAGAATTACCAAGTCATATGAGACGCTCCTTTTGGAGCCTCG 1626
> Ahg493892 jgi|Araly1|493892|fgenesh2_kg.7__3325__AT5G40855.1
Length=195
Score = 178 bits (96), Expect = 2e-43
Identities = 126/140 (90%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 423 TGAGTATTCCATGTCTTTAGATGAAGAAGGGATTT-CCAGGGCAT-CTTTTGAGCTCATA 480
||||| ||||||||||||||||||| ||||||||| |||||| | |||||||| | |||
Sbjct 161 TGAGTCTTCCATGTCTTTAGATGAACAAGGGATTTGGCAGGGC-TGCTTTTGAGTTGATA 103
Query 481 TTTGCATTTGATGAAGTCATATCTCTTGGGCACAAGGAAAGTGTGACAGTTGCCCAGGTG 540
||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 102 TTTGCATTTGATGAAGTCATATCTCTTGGGCACAATAAAAGTGTGACACTTGTTGAGGTG 43
Query 541 AAGCAGTATTGTGAAATGGA 560
||||||||||||||||||||
Sbjct 42 AAGCAGTATTGTGAAATGGA 23
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77437468085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5