BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05030.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487292 jgi|Araly1|487292|fgenesh2_kg.6__426__AT5G05030.1 1784 0.0
Ahg939618 jgi|Araly1|939618|scaffold_600162.1 438 4e-122
> Ahg487292 jgi|Araly1|487292|fgenesh2_kg.6__426__AT5G05030.1
Length=1163
Score = 1784 bits (966), Expect = 0.0
Identities = 1102/1167 (94%), Gaps = 11/1167 (1%)
Strand=Plus/Plus
Query 1 ACATCT-AAAATCAACCAAATTATTTGGAAGCTCTCAAGAAAATATTGATCTCTAATCCA 59
|||||| |||| |||| |||||||| ||||||| |||||||||||||||||| ||||| |
Sbjct 1 ACATCTCAAAA-CAACGAAATTATTAGGAAGCTTTCAAGAAAATATTGATCTGTAATCTA 59
Query 60 TGGACTTTGTTTTTAAACTCGTCGGATTCCTTTTCATAGTTTTAATAGTTCAATCTAAAG 119
|||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 60 TGGATTTTGTTTTTAAACTCGTCGGATTCATCTTCATAGTTTCAATAGTTCAATCTAAAG 119
Query 120 GAAATGTAAAAGATTTGATGTCCGTAAAGTTAAATGAGAACACCATATATGATTGTGTGG 179
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAATGTAAGAGATTTGATATCTGTAAAGTTAAATGAGAACACCATATATGATTGTGTGG 179
Query 180 ATATATATAAACAACCGTCGTTAAGTCATCCACTACTTCAAAATCATAAAGTTCAGCTGG 239
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 180 ATATATATAAACAACCGTCGTTAAGTCATCCACTACTTAAAAATCATAAAATTCAGTTGG 239
Query 240 AACCATC--T-T---TCTCCaaaccaaaaaatcaagttaaaggtgaaagtgaaagaaaaa 293
||||||| | | |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 240 AACCATCTTTCTCCATCTCCAAACCAAAAAATCAAGTTAAACGTGAAAGTGAAAGGGAAA 299
Query 294 aTATCATCGAGTGTCCTAATGGAACAGTTCCGATAATAAGAAATACaaaaaaaTATGTTG 353
|||||||||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct 300 ATATCATCGAGTGTCCAAATGGAACAGTTCCTATACTGAGAAATACAAAAAGATATGTTG 359
Query 354 CAAATGCTCAATATTGGACAGAAAAACACTTAAATCCGCTTACAATCGATAGTCATGGGA 413
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 CAAATGCTCAATATTGGACAGAAAAACACTTAAATCCGCTTACAGCCGATAGTCATGGGA 419
Query 414 CACATATTGCTGGAGTTAGAACAACAGATCAAGGTCCTTACCGTGGTGTGATAGCTTCGC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CACATATTGCTGGAGTTAGAACAACAGATCAAGGTCCTTACCGTGGTGTGATAGCTTCGC 479
Query 474 TTAGTGTGCATGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTAATATATATATTG 533
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 480 TTAGTGTGCATGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTCACATATATATTG 539
Query 534 GCAGTGGAATCTACGACAAAGTTAATTTTATCCAAACCGGCTGGATGATAAATCCAAGTT 593
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 GCAGTGGAATCTACAATAAAGTTAATTTTATCCAAACCGGTTGGATGATAAATCCAAGTT 599
Query 594 TATTTGGTGACGGACGTACATGGAGTTATGGGTTTTGGAAGGGAGCTAACGGAGCAGGTT 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATTTGGTGACGGACGTGCATGGAGTTATGGGTTTTGGAAGGGAGCTAACGGAGCAGGTT 659
Query 654 GTTATAATACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACAGATCATTTAAGTGGAC 713
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 660 GTTATAATACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACTGATCATTTAAGTGGGC 719
Query 714 CTTTACCTCAACTCCCCTCAGGAGGGGACAGAGATATTTCTGTTTCTATTCGACAGGACA 773
||||||||||||||||| ||||||| || |||| ||||||||||||||||| ||||||||
Sbjct 720 CTTTACCTCAACTCCCCGCAGGAGGAGAAAGAGCTATTTCTGTTTCTATTCAACAGGACA 779
Query 774 AAGAGACAGGAAATTGGTGGACTACAGATATAAGAGGCAATGAATCAGAAGAATATATAG 833
|| | |||||||||||||||||||||||||||||| |||||||| |||| | | ||||||
Sbjct 780 AAAAAACAGGAAATTGGTGGACTACAGATATAAGAAGCAATGAACCAGATGTACATATAG 839
Query 834 GCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAAGAGTGCAAACATAGTTGGAGTTA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAAGAGTGCAAACATAGTTGGAGTTA 899
Query 894 CAGGAACAGTCCAGGCTTCTCCTTCGGGTCAAAGCCCACCAATGGGTAATGGTCATTTAC 953
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 900 CAGGATCAGTCCAGGCTTCTCCTTCTGGTCAAAGCCCACCAATGGGTAATGGTCATTTCC 959
Query 954 CAACTGACGATGAGGCAGGGTCGGCGCGTGTTGGAGAAGTTAAGTTTATAGATAATGATT 1013
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 960 CAACTGACGATGACGCAGGATCGGCACGTGTTGGAGAAGTTAAGTTCATAGATAATGATT 1019
Query 1014 TTGTGGTCAAGGGAAGTGACCAATATAAGTTAGAGAAACTTATTGATGATAGTAACAAAT 1073
||||||||||||||||||||||||||||||||||||||||| || | || ||||||||||
Sbjct 1020 TTGTGGTCAAGGGAAGTGACCAATATAAGTTAGAGAAACTT-TT-A-GACAGTAACAAAT 1076
Query 1074 GTTATGGTCTAAAAGATGGAAAGAAGTTAATTTTGTTCAAATATGGTGGACCTGGAGGAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTTATGGTCTAAAAGATGGAAAGAAGTTAATTTTGTTCAAATATGGTGGACCTGGAGGAA 1136
Query 1134 ATTCTTGTGGGATCTAATATTTCCTAA 1160
|||||||||||||||||||||| ||||
Sbjct 1137 ATTCTTGTGGGATCTAATATTTACTAA 1163
> Ahg939618 jgi|Araly1|939618|scaffold_600162.1
Length=1139
Score = 438 bits (237), Expect = 4e-122
Identities = 649/839 (77%), Gaps = 64/839 (8%)
Strand=Plus/Plus
Query 146 AAGTTAAATGAGAACACCATATATGATTGTGTGGATATATATAAACAACCGTCGTTAAGT 205
|||||||||||||| | |||||||||||||||||||| || |||||||| ||| ||| |
Sbjct 113 AAGTTAAATGAGAAGATGATATATGATTGTGTGGATATTTACAAACAACCTTCGCTAAAT 172
Query 206 CATCCACTACTTC-AAAATCATAAAGTTCAGCTGGAACCATC-TTTC---T-CC-aaacc 258
|||||||||| || ||||||| ||| ||||| |||||||||| |||| | || ||| |
Sbjct 173 CATCCACTAC-TCAAAAATCACAAAATTCAGATGGAACCATCTTTTCTAATCCCTAAATC 231
Query 259 aaaaaatcaagttaaaggtgaaagtgaaagaaaaaaTATCATCGAGTGTCCTAATGGAAC 318
|||||||||||| || | ||| | | |||| | |||||||| ||||| || |||||
Sbjct 232 AAAAAATCAAGTCGAACG-CAAAAT-ATTCAAAACA-ATCATCGATTGTCCAAACGGAAC 288
Query 319 AGTTCCGATAATAAGAAATACaaaaaaaTATGTTGCAAATGCTCAATA--TTGGACAGAA 376
|||||| ||| | ||| | |||||| | |||||||||||||| ||||| |||| ||||
Sbjct 289 AGTTCCTATATTGAGACACACAAAAGAGTATGTTGCAAATGCCCAATATTTTGG--AGAA 346
Query 377 AAACACTTAAATCCGCTT-ACAATCG-ATAGTCATGGGACACATATTGCTGGAGTT--A- 431
|| || || |||||| || ||||| | | |||||||| | |||| |||| |||||| |
Sbjct 347 AAGCATTTCAATCCG-TTCACAAT-GCAAAGTCATGGAATACATTTTGCCGGAGTTAGAT 404
Query 432 -G-AA--CAACAGATCAAG-GTCCTTACCGTGGTGTGATAGCTTC-GCT-T-AGTGTGCA 483
| || |||| | || || |||||| | | | || | ||| || | | ||||| ||
Sbjct 405 TGAAAGGCAAC-GGTC-AGAGTCCTTTCTAT-G-GT-ACAGCATCTTATATAAGTGTACA 459
Query 484 TGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTAATATATATATTGGCAGTGGAAT 543
|||||| || ||||| | || |||| |||||||||| | ||||| ||||||| || |
Sbjct 460 TGACTTAAACGTTAGTCGGGACCAAGTTTCATATGCTCACGTATATGCTGGCAGTCGAGT 519
Query 544 CTACGACAAAGTTAATTTTATCCAAACCGGCTGGATGATAAATCCAAGTTTATTTGGTGA 603
|| ||| || ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 520 AAACAACATAGATAATTTTATTGAAACCGGTTGGATGATAAATCCAAGTTTATTTGGTGA 579
Query 604 CGGACGTACATGGAGTTATGGGT-TTTGGAAGGGAGCTAACGG-AGCAGGTTGTTATAAT 661
||||| |||| ||||||| | ||| ||||| || || || | |||| |||||||||
Sbjct 580 TGGACGCGTATGGGGTTATGGATATTTT-AAGGGTGCCAATGGGA-CAGGGTGTTATAAT 637
Query 662 ACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACAGATCATT-TAAGTGGACCTTTACC 720
||| |||||| ||||||||||||||| ||||||| ||||| || ||||||| ||||||||
Sbjct 638 ACAGTATGTCCTGGTTTTGTTCAAGTGTCAAAAAGAGATC-TTATAAGTGGGCCTTTACC 696
Query 721 TCAA-CTCCCCTCAGGAGGGGACAGAGATATTTCTGTTTCTA-TT--CGACAGGACAAAG 776
| || |||| | | ||| | ||| | ||| ||| ||| || | |||||| |||
Sbjct 697 TGAAGCTCC--TGA--AGGTAAAAGAAACATTG--GTT-CTAATTTTCAACAGGATAAAA 749
Query 777 AGACAGGAAATTGGTGGACTA-CAGATATAAGAGGCA-ATGAATCAGA-AGA-ATATATA 832
| ||||||||||||||| || ||||||||| | | | ||| ||| | | | || |
Sbjct 750 AAACAGGAAATTGGTGGG-TATCAGATATAAAAAACGTAGGAAA-AGATATACACAT-T- 805
Query 833 GGCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAA-GAGTGCAAACATAGTTGGAGT 891
|| ||||||||||| |||||||||||| | || ||| | | ||| || || ||||||||
Sbjct 806 GGTTATTGGCCAAAGGAACTATTTGATGTGATAAGTGATG-GTGTGAATATTGTTGGAGT 864
Query 892 TACAGGAACAGTCCAGGCTTCTCCTTCGGGTCAA-AGCCCACCAATGGGTAATGGTCAT 949
| |||| |||| || |||||||||| || ||| || |||||||||||||||||||||
Sbjct 865 TGGAGGAGTAGTCAAGACTTCTCCTTCCGG-CAATAGTCCACCAATGGGTAATGGTCAT 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5