BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05040.1 Length=516 Score E Sequences producing significant alignments: (Bits) Value Ahg487296 jgi|Araly1|487296|fgenesh2_kg.6__430__AT5G05040.1 329 1e-89 > Ahg487296 jgi|Araly1|487296|fgenesh2_kg.6__430__AT5G05040.1 Length=603 Score = 329 bits (178), Expect = 1e-89 Identities = 186/190 (98%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 327 GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT 473 Query 387 CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACTAAACGTTA 446 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 474 CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACAAAACGTTA 533 Query 447 CCAGGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTGTGCTCTTGCAAGCCTGAACC 506 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 534 CCAAGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTATGCTCTTGCAAGCCTAAACC 593 Query 507 ATCTTCTTGA 516 |||||||||| Sbjct 594 ATCTTCTTGA 603 Score = 211 bits (114), Expect = 4e-54 Identities = 156/176 (89%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 1 ATGTTATCTCCGATTGAGAATGAGAGATCCGAAATTCCTTCCCCTGAGAAGCTGAAGTTA 60 ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| Sbjct 1 ATGTTATCTCCGATTGAGAATGAGAGATCGGAACTTCCTTCCCCTAAGAAGCTGAAGTTA 60 Query 61 GTGGAGGAGCCATCCGACGATGAATCTAAGTTCTCTAACTATGATTCGGACGATTGGGAA 120 | |||||||| || |||||||| || |||| |||| ||||||||||| |||| |||| Sbjct 61 G---AGGAGCCAGCCAACGATGAACCTCGGTTCCCTAATTATGATTCGGATGATTTGGAA 117 Query 121 ACTTTGTCTGATGATCTTCGACTGTTAGACGAAGAGTGGGGCAAGAGCGGGGGTTT 176 |||||||| |||||| ||||||||||||| |||||||||||||||| ||||| ||| Sbjct 118 ACTTTGTCAGATGATTTTCGACTGTTAGATGAAGAGTGGGGCAAGACCGGGG-TTT 172 Score = 134 bits (72), Expect = 8e-31 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 251 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCCAACATGGCTATCTCCT 310 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 193 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCAAACATGGCTATCTCCT 252 Query 311 TCTACAACGACAAGACGG 328 |||||||||| ||||||| Sbjct 253 TCTACAACGAAAAGACGG 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18772549788 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5