BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G05040.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487296 jgi|Araly1|487296|fgenesh2_kg.6__430__AT5G05040.1          329    1e-89


> Ahg487296 jgi|Araly1|487296|fgenesh2_kg.6__430__AT5G05040.1
Length=603

 Score =  329 bits (178),  Expect = 1e-89
 Identities = 186/190 (98%), Gaps = 0/190 (0%)
 Strand=Plus/Plus

Query  327  GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT  386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT  473

Query  387  CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACTAAACGTTA  446
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  474  CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACAAAACGTTA  533

Query  447  CCAGGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTGTGCTCTTGCAAGCCTGAACC  506
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  534  CCAAGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTATGCTCTTGCAAGCCTAAACC  593

Query  507  ATCTTCTTGA  516
            ||||||||||
Sbjct  594  ATCTTCTTGA  603


 Score =  211 bits (114),  Expect = 4e-54
 Identities = 156/176 (89%), Gaps = 4/176 (2%)
 Strand=Plus/Plus

Query  1    ATGTTATCTCCGATTGAGAATGAGAGATCCGAAATTCCTTCCCCTGAGAAGCTGAAGTTA  60
            ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct  1    ATGTTATCTCCGATTGAGAATGAGAGATCGGAACTTCCTTCCCCTAAGAAGCTGAAGTTA  60

Query  61   GTGGAGGAGCCATCCGACGATGAATCTAAGTTCTCTAACTATGATTCGGACGATTGGGAA  120
            |   |||||||| || |||||||| ||  |||| |||| ||||||||||| |||| ||||
Sbjct  61   G---AGGAGCCAGCCAACGATGAACCTCGGTTCCCTAATTATGATTCGGATGATTTGGAA  117

Query  121  ACTTTGTCTGATGATCTTCGACTGTTAGACGAAGAGTGGGGCAAGAGCGGGGGTTT  176
            |||||||| |||||| ||||||||||||| |||||||||||||||| ||||| |||
Sbjct  118  ACTTTGTCAGATGATTTTCGACTGTTAGATGAAGAGTGGGGCAAGACCGGGG-TTT  172


 Score =  134 bits (72),  Expect = 8e-31
 Identities = 76/78 (97%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  251  GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCCAACATGGCTATCTCCT  310
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  193  GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCAAACATGGCTATCTCCT  252

Query  311  TCTACAACGACAAGACGG  328
            |||||||||| |||||||
Sbjct  253  TCTACAACGAAAAGACGG  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5