BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05070.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325141 jgi|Araly1|325141|fgenesh1_pm.C_scaffold_6000361 2017 0.0
Ahg939913 jgi|Araly1|939913|scaffold_600457.1 215 8e-55
> Ahg325141 jgi|Araly1|325141|fgenesh1_pm.C_scaffold_6000361
Length=1242
Score = 2017 bits (1092), Expect = 0.0
Identities = 1195/1245 (96%), Gaps = 6/1245 (0%)
Strand=Plus/Plus
Query 42 ATGCAGAGGGAGAGAATGAGCAAGAAGAAGATTAGTCAAGTTCATTGCATTCCCTCTGGT 101
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGCAGAGGGAGAGAATGAGCAAGAAGAAGATTAGTCAGGTTCATTGCATTCCCTCTGGT 60
Query 102 GATCATATTCTCATGACGGCTTCTTCTTCCAAACACATTC-CTCATATCAGATTCTACAA 160
||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||
Sbjct 61 GATCATATTCTCATGACGGCTTCTTCTTCTAAACACA-TCTCTCATATCCGATTCTACAA 119
Query 161 AGCCTGGAAGGGTAACAACAGATTTTGCTGTGGTGGTAGACTAATCTTTGGTCCTGATGT 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCCTGGAAGGGTAACAACAGATTTTGCTGTGGTGGTAGACTAATCTTTGGTCCTGATGT 179
Query 221 ATCATCTCTGTACCTAACCTCCTTCTTGATTGGAGCTCCTGCGCTTACATTCTGCATAAG 280
||||||||||| ||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 180 ATCATCTCTGTTCCTAACCTCCTTCTTGATTGGTGCCCCTGCGCTTACATTCTGTATAAG 239
Query 281 GATGCTCGTGTGGATCAAAAGA-GGAGATCCTTTCTTCAACTATACCGTTCTAGCTTCAG 339
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 240 GATGCTCTTGTGGATCAAAA-ATGGAGATCCTTTCTTCAACTATACCGTTCTAGCTTCAG 298
Query 340 GATTTATCCTCACCCTCTTGGATTTTACGTTTCTAATGTTGACATCAGCTAGGGATCCAG 399
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 GATTTATCCTCACCATCTTGGATTTTACGTTTCTATTGTTGACATCAGCTAGGGATCCAG 358
Query 400 GAATCATCCCAAGGAACAAAACATCAATGATTCTTGAAGATGATTCAGATAGTTCCTTGA 459
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 359 GAATCATCCCAAGGAATAAAACATCAATGAATCTTGAAGATGATTCAGATAGTTCCTTAA 418
Query 460 CACAATCTATGGAATGGGTCAACAACAAAACTCCTAATCTCAAGATTCCTAGAACCAAAG 519
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 419 CACAATCTATGGAATGGGTCAACAACAAAACTCCTAATCTCAAGATTCCAAGAACGAAAG 478
Query 520 ACGTTTTCGTCAATGGTTACACTATCAAAGTCAAGTTCTGCGATACTTGCTTGCTCTATC 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACGTTTTCGTCAATGGTTACACTATCAAAGTCAAGTTCTGCGATACTTGCTTGCTCTATC 538
Query 580 GTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACC 639
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCCACCTCGTGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACC 598
Query 640 ATTGTCCATGGGTTGGTCAGTGCATTGCCCGAAGAAACTACCCGTTCTTCATTTGCTTCA 699
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 ATTGTCCATGGGTTGGACAATGCATTGCCAGAAGAAACTACCCGTTCTTCATTTGCTTCA 658
Query 700 TCTCATCTTCAACATTGCTATGCATATATGTTTTTGTGTTCTCCTGGATCAACCTGATTA 759
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 659 TCTCATCTTCAACATTGCTATGCATATATGTCTTTGTGTTCTCCTGGATCAATCTGATTC 718
Query 760 GACAACCTGGGAAGCTATGGAGGACAATGTCTGATGATATAGTGTCTGTCATTCTTATTG 819
|||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |
Sbjct 719 GACAACCTGGGAAGCTATGGAGAACAATGTCTTATGATATAGTGTCAGTCATTCTTATCG 778
Query 820 TATATACATTTGTCGCTGTCTGGTTCGTTGGTGGCCTTACCATTTTCCACTTCTATCTCA 879
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TATATTCATTCGTCGCTGTCTGGTTCGTTGGTGGACTTACCATTTTCCACTTCTATCTCA 838
Query 880 TGTCTACAAACCAGACAACATATGAGAATTTCCGGTACCGTTATGATAAGAAAGAAAATC 939
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 TGTCTACAAACCAGACAACATATGAGAATTTCCGGTACCGTTACGATAAGAAAGAAAATC 898
Query 940 CTTACAAGAGAGGGTTACTGAAGAATGTTAAAGAAGTACTATTTGCCAAGATCCCGCCTT 999
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 CTTACAAGAGAGGGTTACTGAAGAATGTTAAAGAAGTATTATTTGCCAAGATCCCGCCTT 958
Query 1000 CGCAACTAGATCTCAGAGCAATGGTCCCGGAAGAAGATGACATGACTATAGCATCTAACG 1059
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 959 CGCAACTAGATCTCAGAGCAATGGTCCCGGAAGAAGATGACATGACAATAACATCTATCG 1018
Query 1060 -ATTCCGAGTATGAGTCAGAGTATACCTCCTCCGTGAGATACGATACAGAGATGGGAGGC 1118
|| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1019 GAT-CCGAGTATGAGTCAGAGTATAGCTCCTCCGTGAGATACGATACAGAAATGGGAGGC 1077
Query 1119 AAGCTCATTAAAAGGGATAGCCCTAGGAAGCTTCCTTTGCCAACACGAAACTTAGATGAT 1178
||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGCTCACTAAAAGGGAGAGTCCGAGGAAGCTTCCTTTGCCAACACGAAACTTAGATGAT 1137
Query 1179 ATCAAGGACATTAGTGATAACTACGACAGATCTACGACAACTAGAGAGGATGCTTCTGAC 1238
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1138 ATCAAGGAAATTAGTGATAACTACGACAGATCTACGACAACTAGAGATGATGCTTCTGAG 1197
Query 1239 CGCGATCCTTCGTTTTTCTCATCTCAACTAGACTTGCCCAAGTAA 1283
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 CGCGATCCTTCGTTCTTCTCATCTCAACTAGACTTGCCCAAGTAA 1242
> Ahg939913 jgi|Araly1|939913|scaffold_600457.1
Length=268
Score = 215 bits (116), Expect = 8e-55
Identities = 129/135 (96%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 67 AGAA-GATTAGTCAAGTTCATTGCATTCCCTCTGGTGATCATATTCTCATGACGGCTTCT 125
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 AGAATGATTAGTCAGGTTCATTGCATTCCCTCTGGTGATCATATTCTCATGACGGCTTCT 92
Query 126 TCTTCCAAACACATTCCTCATATCAGATTCTACAAAGCCTGGAAGGGTAACAACAGATTT 185
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 93 TCTTCTAAACACATTTCTCATATCAGATTCTACAAAGCCTGGAAGGGTAACAGTAGATTT 152
Query 186 TGCTGTGGTGGTAGA 200
|||||||||||||||
Sbjct 153 TGCTGTGGTGGTAGA 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5