BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05080.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487299 jgi|Araly1|487299|fgenesh2_kg.6__433__AT5G05080.1 1860 0.0
> Ahg487299 jgi|Araly1|487299|fgenesh2_kg.6__433__AT5G05080.1
Length=1207
Score = 1860 bits (1007), Expect = 0.0
Identities = 1121/1173 (96%), Gaps = 20/1173 (2%)
Strand=Plus/Plus
Query 70 ctctc-ccttcttcttctcCGATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAG 128
||||| | |||||||||||||||||| | |||||||||| ||||||||||||||| |||
Sbjct 40 CTCTCTCTTTCTTCTTCTCCGATTTC-AAGTTGAATCATTACTTCGAGAGAGGTAGAGAG 98
Query 129 AAAGGGATCGCCTTTTCTCACTCTCTGCGGATTCTCAATTTTGGGCAAGAAGGCAAGAAC 188
||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 99 AAAGGGATCGCCTTTTCTCACTCTCTGCGTATTTTCAATTTTGGGCAAGAAGCCAAGAAC 158
Query 189 AGTTTTTATCGCAATTGAGTCTTGAAGACCA--CAAGGATTTGATCACATTGGTGCTTCT 246
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 159 AG-TTTTATCGCAATTGAGTCTTGAAGACCAGTAAAGGATTTTATCACATTGGTGCTTCT 217
Query 247 GCCTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATT-TGCCATGGCT 305
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 218 GCCTGTTTATCTGAGTCTGAGGACAAGAACTTCTGGGGCGTTTATAATTCT-CCATGGCT 276
Query 306 AGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTT 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTA 336
Query 366 GACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATA 425
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GACGAATCTCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATA 396
Query 426 TGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAG 485
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 397 TGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGAGTTTTCCGTATGAAA 456
Query 486 TTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATT 545
||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 457 TTGGCTTTGTCACATGATTTTCCACATTCACCGCCTAAAGGCTACTTCATGACAAAGATT 516
Query 546 TTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 517 TTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAGGATTGG 576
Query 606 AACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCA 636
Query 666 TTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAG 696
Query 726 TATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAG 785
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 697 TATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCGAAGTTCAAG 756
Query 786 ACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACG 845
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 ACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACAAACAACGAGACG 816
Query 846 CCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGT 905
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 817 CCTAGTGCTGCTACTGCAATACCCTCTTCAGTGACAGACATAAAGAGAGTAACAACGAGT 876
Query 906 GCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCC---------TCTGCAAGT 956
|||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 877 GCCCAAGACCAACAACACATGGCTAATGTCGTTGTAGCAGCCACAGCAGGATCTGCAAGT 936
Query 957 GTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAG 1016
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 937 GTGGTCACTACGACTCAGAAAAGGGAGGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAG 996
Query 1017 AAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCAG-TGTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 997 AAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCTGATGTC 1056
Query 1076 TTACGCTCTTTGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGA 1135
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTACGCTCTTCGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGA 1116
Query 1136 GGATTTTTCATTTCTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTT 1195
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GGATTTCTCATT-CTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTT 1175
Query 1196 GGTGTTCTAATCTACA-CATGGTTTTGCTGAGT 1227
|||||||||||||||| | ||||||||||||||
Sbjct 1176 GGTGTTCTAATCTACATC-TGGTTTTGCTGAGT 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5