BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05090.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939925 jgi|Araly1|939925|scaffold_600469.1 1299 0.0
> Ahg939925 jgi|Araly1|939925|scaffold_600469.1
Length=839
Score = 1299 bits (703), Expect = 0.0
Identities = 791/834 (95%), Gaps = 4/834 (0%)
Strand=Plus/Plus
Query 142 tttttttGTTAGTGTTGAGGATGAGAGAAGAAGATTCCAATTGGTTTGCTAAATGGGAAG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTTGTTAGTGTTGAGGATGAGAGAAGAAGATTCCAATTGGTTTGCTAAATGGGAAG 60
Query 202 AAGAGCTTCCGTCGCCGGAGGAACTCATACCTTTATCTCAATCTTTAATCACGCCTGATC 261
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AAGAGCTTCCGTCGCCGGAGGAACTCATACCTTTATCTCAATCTTTAATCACTCCTGATC 120
Query 262 TCGCCATCGCCTTCGATCTCCACCGTAACAACAACTCAAACTCCGGTCAACCTCTACCTC 321
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 121 TCGCCATCGCCTTCGATCTCCACCG---CGATAACTCAAACTCCGGTCAACCTCTACCTC 177
Query 322 AAACCACACCGCCACAACCCAATTCCTCAGCCGAAATCGCCGGAGACTCTACCGGAGACG 381
||||||| |||||||||||||||||||||||||| | |||||||| || ||||||||||
Sbjct 178 AAACCACGCCGCCACAACCCAATTCCTCAGCCGAGTTTGCCGGAGATTCCACCGGAGACG 237
Query 382 AACCAGCAAGAACGCTAAAACGACCGCGTTTAGTATGGACGCCACAGCTACACAAACGTT 441
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 238 AACCAGCAAGAACTCTGAAACGACCGCGTTTAGTATGGACGCCGCAGCTACACAAGCGTT 297
Query 442 TCGTAGACGCGGTGGCTCATCTCGGGATAAAAAACGCGGTTCCTAAAACCATCATGCAGC 501
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 TCGTAGACGCGGTGGCTCATCTCGGGATAAAAAACGCTGTTCCTAAAACCATCATGCAGC 357
Query 502 TTATGAGCGTTGATGGTTTAACAAGAGAAAACGTCGCTAGCCATTTGCAAAAATACAGAC 561
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTATGAGCGTCGATGGTTTAACAAGAGAAAACGTCGCTAGCCATTTGCAAAAATACAGAC 417
Query 562 TTTACCTCAAAAGAATGAAATCCGGCGGCGGAGGAGGCGGCAGCGGTGATTCCGATCATC 621
||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 418 TTTACCTCAAAAGAATGCAATCCGGCGGCGGTGGAGGCGGCGGAGGTGATTCCGATCATC 477
Query 622 TCTTTGCCAGCTCACCTGTTCCTCCACATTTCCTCCATCCGACAAGTAGACAGAGCTCCG 681
|||| || || |||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 478 TCTTCGCTAGTTCACCTGTTCCTCCACATTTCCTCCATCAGACAAGTAGACAAAGCTCTG 537
Query 682 ACCTTTTCATACCCTCTTTTGTCCCAATTTCAACTCAGCAGCAACATATCGCAGCACCAC 741
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 ACCTTTTCATACCCACTTTTGTCCCAATTTCAAGTCAGCAGCAACATATCGCAGCACCAC 597
Query 742 CGTCTCAGTTCCTCCACCGACAAATCTCCGCCGTTAATTTCACTTCACCGACCAAAGCGA 801
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 598 CGTCTCAGTTCCTCCACCGACAAATGTCCGCCGTTAATTTCACTTCTCCGACCAAAGCGA 657
Query 802 CCGACCAAGCAATGTTCTTGGCTAGGCAGCAGAGTGAACTACAGCAACCAGTTTTCAAAC 861
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 658 CGGACCAAGCAATGTTCTTGGCTAGGCAGCAGAGTCAACTACAGCAACCAGTTTTCAGAC 717
Query 862 CATCTTCATTGCATTTACATAGTCAAGTCGCTAATTACACGCAAGATTTGAAATCAGGAG 921
|||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 718 CATCTTCATTGCATTTGCATAGTCAAGTGGCTAATTACACTCAAGATTTGGAATCAGGAG 777
Query 922 CCAAAACGGTCTTGACTCTGTTTCCAACTCGAGACGATTGAATTTTTATTAAAC 975
||||||| |||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 778 CCAAAACTGTCTTGACTCTGTTTCCAACTCGAGACGATTGAATTAT-AGTAAAC 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5