BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05100.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487300 jgi|Araly1|487300|fgenesh2_kg.6__434__AT5G05100.1 1940 0.0
Ahg928783 jgi|Araly1|928783|scaffold_301240.1 494 1e-138
Ahg917433 jgi|Araly1|917433|Al_scaffold_0008_2184 204 2e-51
Ahg912587 jgi|Araly1|912587|Al_scaffold_0001_2841 204 2e-51
Ahg891121 jgi|Araly1|891121|Al_scaffold_0007_3107 204 2e-51
Ahg483163 jgi|Araly1|483163|fgenesh2_kg.4__2223__AT2G40960.1 163 3e-39
> Ahg487300 jgi|Araly1|487300|fgenesh2_kg.6__434__AT5G05100.1
Length=1479
Score = 1940 bits (1050), Expect = 0.0
Identities = 1334/1460 (91%), Gaps = 64/1460 (4%)
Strand=Plus/Plus
Query 45 gagagagagagagagagagagaTAAAGGGTCGATAAGGTCTTTTTCCGTTTCCTTGACCT 104
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 24 GAGAGAGAGAGAGAGAGAGAGATAAAGGGTCGATAAGGTC-TTTTCCGTTTCCTTGACC- 81
Query 105 CTCTGGGATTTGGATTTCGATTTGGATTTCGATTTCCTCATCTCATCGATTTGCTTCTCA 164
||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 82 CTC------TTGGATTTC------GATTTCGATTTCCTCATCTCATCGATTTGCTTCTCA 129
Query 165 ATCTCTCCAATTCGAT-TCTCCTCTGGAAATTTCAATCCTTTTTATATTT-TCCTTGGTG 222
||||||| ||||| || ||||||| ||||||||||||||||||| | ||| |||||||||
Sbjct 130 ATCTCTCTAATTC-ATATCTCCTCGGGAAATTTCAATCCTTTTT-T-TTTCTCCTTGGTG 186
Query 223 ATTTCTAAGATAATTAAGATCGAGAAAAGGAGAATTTTGAGAGAGAAAGCATCCATCCAT 282
||||||||||||||| | || | | ||| || |||||||||||
Sbjct 187 ATTTCTAAGATAATT-A-AT-------------A---T---CGAG-AA-CATCCATCCAT 223
Query 283 CGATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTC 342
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CGATGGCCGCTATGAGCGAGAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTC 283
Query 343 AGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCTTTC 402
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 284 AGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTCGATATACAGAAGTTCTTTC 343
Query 403 AAAGTCCAGAGCAGCAACAATATGAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AAAGTCCAGAGCAGCAACAATATGAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTA 403
Query 463 TTGCTCACCGTGTTGCTCAGCATTACGGGCTATTTACCACTGCTTTAGAAGGTGGTGGTG 522
||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 404 TTGCTCACCGTGTTGCTCAGCATTACGGGCTGTTTACAACGGCTTTAGACGGTGGTGGTG 463
Query 523 TTGATGGCTCAGGGAACAGAATCCTGGCGACCAAAACGGTTGAAAGTAGATACCCTTACG 582
||||||||||||||||||||||| ||||||||||||| | |||||||||||||| || |
Sbjct 464 TTGATGGCTCAGGGAACAGAATCTTGGCGACCAAAACTGCGGAAAGTAGATACCCGTATG 523
Query 583 TCTGTTTGTCTGAGATTCCTGTAAAGCAACCTGAGATTCATGGTAGGCCTGAGGGTTTCA 642
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 524 TCTGTTTGTCTGAGATTCCTGTTAAGCAACCTGAGATTCATGGTAGGCCTGAGGGTTTCA 583
Query 643 AAATCGCCATCAAGCCTAGGCCTAACAGAGGAGCTGGTGGGAGTGGTAGTGGATCAGGAG 702
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 584 AAATCGCCATCAAGCCTAGACCTAACAGAGGATCTGGTGGGATTGGTAGTGGATCAGGAG 643
Query 703 TAGAGAAGAATCTTTTGAGAAGCGTTGAGGAGAGAAAAGAAGAGTATGATAAAGCTCGGG 762
| || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 644 TTGAAAAGAATCTTTTGAGAAGCGTTGAGGAGAGGAAAGAAGAGTATGATAGAGCTCGGG 703
Query 763 CTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACACGAGCTCCTC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACACGAGCTCCTC 763
Query 823 CTCCTCCCTATCCTCGTCTCGACTCAAAACATAATACTGCATGTCCGAGTAGAAATGAGA 882
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 764 CTCCTCCCCCTCCTCGTCTCGACTCAAAACATAATAATACATGTCCGAGTAGAAATGAGA 823
Query 883 CTGAAGTGGTGGTTAATTATAATAGTAATCCTGTTGATGTAGAGAGGAATGGTGTTATCA 942
| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 824 CCGAAGTGGTGATTAATCATATTAGTAATCCTGTTGATGTAGAGAGGAATGGTGTTATCA 883
Query 943 GAGACTCAGGGCGGACTTCTCGGGTTGCCATTATTAGAGATAGAGAGAAGGATCGTTATG 1002
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GAGACTCAGGACGGACTTCTCGGGTTGCCATTATTAGAGATAGAGAGAAGGATCGTTATG 943
Query 1003 ATCCTGATTATGACCGTAACAGGTATGTGAGGGTTGCGCCACCGGTACAAAACTTCAATC 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 ATCCTGATTATGACCGTAACAGGTATGTGAGGGTTGCGCCACCGGTACAAAACTTCAATC 1003
Query 1063 CGATACCGATTCCGCTTCCGTTCCATGACGCAATTTTCCCACAGATGCCAAGAACTCAAG 1122
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CGATACCAATTCCGCTTCAGTTCCATGACGCAATTTTCCCACAGATGCCAAGAACTCAAG 1063
Query 1123 CCAGCCTAAACTATGGACACCCCTTAAACCCAGCTATGACGGCACCTTCTTATACAGAGT 1182
||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1064 CCAGCATAAACTATGGACATCCCTTAAACCCAGCAATGACGGCACCTTCTTATACAGAGT 1123
Query 1183 GGCCTAGTGCCACTATGACTTATGCACAAACATTGAATGCGTCAGACGTACATCATTTCA 1242
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1124 GGCCTAGTGCCACTATGACTTATGCACAAACATTGAATGCGTCAGACACACATCATTTCA 1183
Query 1243 GGCACCCGAATCCTTGACCTTTTGGTCGTATTCAGCACAATGTCTTGTATCCAAACAGGT 1302
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1184 GGCACCCGAATCCTTGACCTTTTG-TCGTGTTCAGCACAATGTCTTGTATCCAAACAGGT 1242
Query 1303 TTTATTGATGTAGCTTTAGATTTTCAGTTCTTGTTGCAAACATTGGCCTCTTTTATCGTA 1362
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |
Sbjct 1243 TTTATTGATGTAGCTTTAGATTTTCTGCTCTTGTTGCAAACATTGGCCACTTTTATCACA 1302
Query 1363 AGACATCTCTAAGCTTTTGTTACAATATATTATTATTATCAAGCTTCTCCAC-GAAATCC 1421
|||||| | | | | | ||| | ||||||||||||||| | || |||||||
Sbjct 1303 AGACAT-T--A---T------A-A-TAT-T-ATTATTATCAAGCTTTTGCAATGAAATCC 1346
Query 1422 AAAATCTGCaaaaaaaaTTGT--TGTACAATGGGCCGGCCTGTAAAGGTTGTGGCCCGTT 1479
||||||||||| | | || | || |||||| | |||||||||| || |||||| ||
Sbjct 1347 AAAATCTGCAAGCACTAG-GTACTCTA-AATGGGTCTGCCTGTAAAGCTTATGGCCCATT 1404
Query 1480 TAGAGTAGATAGACGTGGAA 1499
||| |||||||| ||||||
Sbjct 1405 TAGGGTAGATAGTTGTGGAA 1424
Score = 84.2 bits (45), Expect = 3e-15
Identities = 50/52 (96%), Gaps = 1/52 (2%)
Strand=Plus/Plus
Query 1529 TTTTCTTGTTCTTAT-GGTCAACATAGAAAACAGAGTCAACGTATTTCCAAA 1579
||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1427 TTTTCTTGTTCGTATGGGTCAACATAGAAAACAGAGTCAACGTATTTCCAAA 1478
> Ahg928783 jgi|Araly1|928783|scaffold_301240.1
Length=1043
Score = 494 bits (267), Expect = 1e-138
Identities = 467/561 (83%), Gaps = 24/561 (4%)
Strand=Plus/Plus
Query 280 CATCGATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTC 339
|||| ||||| ||||||| ||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 17 CATCTATGGCTGCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAAGCTC 76
Query 340 TTCAGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCT 399
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 77 TTCAGAATCCTCGTCATCGTCTCACCATTTTGCGGATGGAGCTTGATATACAGAAGTTCT 136
Query 400 TTCAAAGTCCAGAGCAGCAACAATAT-GAGTTCCAGCCTTTGCCTACATCTTATCTTCGT 458
|||||| || ||||||| || | | || |||| |||||| || ||||| || || |||
Sbjct 137 TTCAAAACCCTGAGCAGCTTCAGT-TCGAATTCCGGCCTTTTCCAACATCGTACCTGCGT 195
Query 459 CTTATTGCTCACCGTGTTGCTCAGCATTACGGGCTATTTACCACTG-CTTTAGA-A--GG 514
||| ||| || || |||||||||||||| || ||| | |||| || |||| || | ||
Sbjct 196 CTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCA-TGGCTTTGGACAATGG 254
Query 515 TGGTGGTGT---TGATGGCTCAGGGAACAGAATCCTGGCGACCAAAACGGTTGAAAGTAG 571
| ||||| |||||| || | |||||||||||||| ||| || || | || |||||
Sbjct 255 TACTGGTGCAGGTGATGGATCCGAGAACAGAATCCTGGTGACTAAGACAGCGGAGAGTAG 314
Query 572 ATACCCTTACGTCTGTTTGTCTGAGATTCCTGT-AAAGCAACCTGAGATTCATGGTAGGC 630
|| ||||| ||||| || || || || ||||| ||| |||||||||| ||||||| |
Sbjct 315 ATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAA-CAACCTGAGA---ATGGTAGAC 370
Query 631 CTGAGGGTTTCAAAATCGCCATCAAGCCTAGGCCTAACAGAGGAGCTGGT-G-GGAGTGG 688
| ||||||||||||||||| ||||||||||| || || |||||| ||||| | || | ||
Sbjct 371 CCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTGGTTGTGG-G-GG 428
Query 689 TAGTGGATCAGGAGTAGAGA-AGAATCTTTTGAGAAGCGTTGAGGAGAGAAAAGAAGAGT 747
||| ||||| |||||| | | |||||||||||||||| |||||||||||||| |||||||
Sbjct 429 TAGCGGATCGGGAGTACA-ACAGAATCTTTTGAGAAGTGTTGAGGAGAGAAAGGAAGAGT 487
Query 748 ATGATAAAGCTCGGGCTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTT 807
|||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 488 ATGATAAAGCCCGGGCTCGGATCTTTAACAGCCCTAGCAGTTCCGACTCTGAAGATTCTT 547
Query 808 CA--AC-ACGAGCTCCTCCTC 825
|| || |||| |||| ||||
Sbjct 548 CATCACTACGACCTCCCCCTC 568
> Ahg917433 jgi|Araly1|917433|Al_scaffold_0008_2184
Length=210
Score = 204 bits (110), Expect = 2e-51
Identities = 174/205 (85%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 285 ATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAG 344
||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
Query 345 AACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCTTTCAA 404
|| ||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 61 AATCCTCGCCATCGTCTCACCATTTTGTGGATGGAGATTGATATACAGAAGTTCTTTCAA 120
Query 405 AGTCCAGAGCAGCAACAAT-ATGAGTTCCAGCCTTTGCCTACATCTTATCTT-CGTCTTA 462
| || ||||||| || | | || |||| |||||| || ||||| || | | ||| ||
Sbjct 121 AACCCTGAGCAGCTTCAGTTA-GAATTCCTGCCTTTTCCAACATCGTA-CATGCGTTTTG 178
Query 463 TTGCTCACCGTGTTGCTCAGCATTA 487
||| || || ||||||||||||||
Sbjct 179 CTGCACATCGAGTTGCTCAGCATTA 203
> Ahg912587 jgi|Araly1|912587|Al_scaffold_0001_2841
Length=210
Score = 204 bits (110), Expect = 2e-51
Identities = 174/205 (85%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 285 ATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAG 344
||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
Query 345 AACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCTTTCAA 404
|| ||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 61 AATCCTCGCCATCGTCTCACCATTTTGTGGATGGAGATTGATATACAGAAGTTCTTTCAA 120
Query 405 AGTCCAGAGCAGCAACAAT-ATGAGTTCCAGCCTTTGCCTACATCTTATCTT-CGTCTTA 462
| || ||||| | || | | || |||| |||||| || ||||| || | | ||| ||
Sbjct 121 AACCCTGAGCAACTTCAGTTA-GAATTCCTGCCTTTTCCAACATCGTA-CATGCGTTTTG 178
Query 463 TTGCTCACCGTGTTGCTCAGCATTA 487
|||| || || ||||||||||||||
Sbjct 179 TTGCACATCGAGTTGCTCAGCATTA 203
> Ahg891121 jgi|Araly1|891121|Al_scaffold_0007_3107
Length=210
Score = 204 bits (110), Expect = 2e-51
Identities = 175/206 (85%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 285 ATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAG 344
||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
Query 345 AACCCTCGTCATCGTCTCACCATTTTG-CGTATGGAGCTTGATATACAGAAGTTCTTTCA 403
|| ||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 61 AATCCTCGCCATCGTCTCACCATTTTGTCG-ATGGAGATTGATATACAGAAGTTCTTTCA 119
Query 404 AAGTCCAGAGCAGCAACAAT-ATGAGTTCCAGCCTTTGCCTACATCTTATCTT-CGTCTT 461
|| || ||||||| || | | || |||| |||||| || ||||| || | | ||| ||
Sbjct 120 AAACCCTGAGCAGCTTCAGTTA-GAATTCCTGCCTTTTCCAACATCGTA-CATGCGTTTT 177
Query 462 ATTGCTCACCGTGTTGCTCAGCATTA 487
||| || || ||||||||||||||
Sbjct 178 GCTGCACATCGAGTTGCTCAGCATTA 203
> Ahg483163 jgi|Araly1|483163|fgenesh2_kg.4__2223__AT2G40960.1
Length=1206
Score = 163 bits (88), Expect = 3e-39
Identities = 188/235 (80%), Gaps = 11/235 (5%)
Strand=Plus/Plus
Query 314 GGTGGATCCTTTTTTGGTCGAGGCTCTTCAGAACCCTCGTCATCGTCTCACC-ATTTTGC 372
|||||||||||||||||||||||||||||| |||||||| ||||||| || | |||||||
Sbjct 143 GGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTC-CAACGATTTTGC 201
Query 373 GTATGGAGCTTGATATACAGAAGTTCTTTCAAAGTCCAGAGCAGCAACAATAT-GAGTTC 431
| ||||| |||||||| |||| |||||| || || || || ||||| | || | ||||||
Sbjct 202 GGATGGAACTTGATATTCAGAGGTTCTTCCAGAGCCCTGATCAGCAGCTAT-TCGAGTTC 260
Query 432 CAGCCTTTGCCTACATCTTATCTTCGTCTTATTGCTCACCGTGTTGCTCAGCATTACGGG 491
|||| ||| |||||||| || || |||||| || || ||||||||| | ||||| ||
Sbjct 261 CAGCATTTCCCTACATCATACCTCCGTCTTGCGGCCCATCGTGTTGCTAATCATTATGGA 320
Query 492 CTATTTACCA-CTGCTTTAGAAGGTGGTGGTGTTGATGGCTCA-GGGAACAGAAT 544
||| |||| | | | || || | |||||||| ||||| | | |||| ||||||
Sbjct 321 CTAATTAC-ATCAG-TTC-GA-GATGGTGGTGCAGATGG-TAACGGGAGCAGAAT 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5