BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05110.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939927 jgi|Araly1|939927|scaffold_600471.1 1046 0.0
Ahg923604 jgi|Araly1|923604|scaffold_104885.1 126 3e-28
> Ahg939927 jgi|Araly1|939927|scaffold_600471.1
Length=746
Score = 1046 bits (566), Expect = 0.0
Identities = 687/745 (92%), Gaps = 9/745 (1%)
Strand=Plus/Plus
Query 84 GAGAAGCTCACTGAGAACAATGGATATGAGACGTGCTTCGATGTGTATGATGTTAATTTG 143
||||||||||||| |||||||||||||||||||| | ||| ||| ||||| || |||||
Sbjct 2 GAGAAGCTCACTGGGAACAATGGATATGAGACGTTCATCGGCGTGGATGATTTTGATTTG 61
Query 144 CGTCTCCTTGGTTCTCCTTTCGGGTTTTGGCCAGTTTGTGATCTGCAGTGAAGAAAAAGG 203
||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 62 CGTGTCGTTGGTTCTCCTTTCTGGATTTGGCCAGTTTGTGATCTGCAGTGAAGAAAAAGC 121
Query 204 AACGTACAACG---------ACAACGTCGTAAAGATGAAGCTTGGTGGATTTAGCGATTC 254
||||||||||| ||||||| |||| |||| ||||||||||||||||||||||
Sbjct 122 AACGTACAACGACCACAACAACAACGTTGTAAGGATGCAGCTTGGTGGATTTAGCGATTC 181
Query 255 CAAGAACGATTGGAACGGTGGAAAAGAGATCGATGATATTGCACTCTTCGCTGTTCAAGA 314
|| ||| || | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 182 CACGAATAATCGTAACGGTGGGGAAGAGATCGATGATATTGCACTCTTCGCTGTTCAAGA 241
Query 315 GCACAACAGACGAGAGAATGCTGTTCTTGAGCTTGCTAGAGTATTGAAGGCAACAGAGCA 374
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACACAACAGACGAGAGAATGTTGTTCTTGAGCTTGCTAGAGTATTGAAGGCAACAGAGCA 301
Query 375 GGTGGTTGCTGGCAAGCTATACCGTCTTACTCTTGAAGTTATTGAAGCTGGTGAGAAAAA 434
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 302 GGTTGTTGCTGGCAAGCTCTATCGTCTTACTCTTGAAGTTATTGAAGCTGGTGAGAAGAA 361
Query 435 GATTTATGAAGCTAAAGTTTGGGTGAAGCCATGGATGAACTTTAAGCAGCTTCAGGAGTT 494
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 362 GATTTATGAAGCTAAAGTTTGGGTGAAGCCATGGATGAACTTCAAGCAGCTTCAGGAGTT 421
Query 495 CAAGAATATTATCCCCTCCTTCACTATCTCTGACCTTGGCTTCAAACCAGATGGCAATGG 554
||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 422 CAAGAATGTTATCCCCTCCTTCACTATCTCTGACCTTGGCTTGAAATCAGATGGTAATGG 481
Query 555 ATTTGACTGGAGATCAGTATCAACAAATAACCCTGAAGTCCAAGAAGCAGCGAAGCACGC 614
|||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||| ||
Sbjct 482 ATTTGACTGGAGATCAGTATCAACAAATAACCTTGAAGTACAAGAGGCAGCAAAGCAAGC 541
Query 615 CATGAAATCACTTCAACAGAAATCAAACTCACTGTTCCCCTATAAACTCATAGATATAAT 674
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 542 AATGAAATCACTTCAACAGAAATCAAATTCACTGTTCCCCTATAAACTCATAGATATAAT 601
Query 675 CCTAGCCAGGGCAAAGGTGGTTGAAGAGCGTGTGAAATTCGAACTGCTGCTGAAGCTAGA 734
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 602 CCTAGCCAGGGCAAAGGTGGTTGAAAACCGTGTGAAATTCGAACTGCTTCTGAAGCTAGA 661
Query 735 GAGGGGCAACAAACTGGAGAAGTTCATGGTAGAAGTGATGAAGGATCAAACCGGCAAGTA 794
|||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||
Sbjct 662 GAGGGGCAACAAACTGGAGAGGTTGATGGTTGAAGTGATGAAGGATCAAAACGGCAAGTA 721
Query 795 TGAGTAGAAGTTGCAGATAGCTTTT 819
| |||||||||||||||||||||||
Sbjct 722 TCAGTAGAAGTTGCAGATAGCTTTT 746
> Ahg923604 jgi|Araly1|923604|scaffold_104885.1
Length=556
Score = 126 bits (68), Expect = 3e-28
Identities = 76/80 (95%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 465 ATGGATGAACTTTAAGCAGCTTCAGGAGTTCAAGAATATTATCCCCTCCTTCACTATCTC 524
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 474 ATGGATGAACTTCAAGCAGCTTCAGGAGTTCAAGAATGTTATCCCCTCCTTCACTATCTC 533
Query 525 TGACCTTGGCTTCAAACCAG 544
|||||||||||| ||| |||
Sbjct 534 TGACCTTGGCTTGAAATCAG 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5