BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05120.1 Length=606 Score E Sequences producing significant alignments: (Bits) Value Ahg325146 jgi|Araly1|325146|fgenesh1_pm.C_scaffold_6000366 706 0.0 > Ahg325146 jgi|Araly1|325146|fgenesh1_pm.C_scaffold_6000366 Length=615 Score = 706 bits (382), Expect = 0.0 Identities = 543/619 (88%), Gaps = 17/619 (3%) Strand=Plus/Plus Query 1 ATGTTGTCCTCGGACTCGAATTACGCTAGTGATATTAGCGACGATGCCTCCGCCACCGGA 60 ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGTTGTCCTCTGATTCGAATTACGCTAGTGATATTAGCGACAATGCCTCCGCCACCGGA 60 Query 61 TCGATAGAGAATCCTATATACAAATGCAAGTATTGTCCTAGGAAGTTCGATAAAACACAA 120 |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TCGATAGAGAATCCAATGTACAAATGCAAGTATTGTCCTAGGAAATTCGATAAAACACAA 120 Query 121 GCATTAGGTGGTCATCAAAATGCACACA-GAAAGGAGAGAGAGGTCGAAAAACAACAAAA 179 ||||| ||||||||||||||||| |||| ||| |||||||| ||| |||||||||| | Sbjct 121 GCATTGGGTGGTCATCAAAATGCTCACAAGAA-GGAGAGAGGGGTAAAAAAACAACATGA 179 Query 180 AGCATTTTTGGCGCATTTGAACCGACCAGAA-CCAGATCTTTACGCGTACTCGTATTCGT 238 ||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| | Sbjct 180 AGCATTTTTGGCGCATTTGAACCAACC-GAAACCAGACCTTTACTTGTACTCGTATTTGC 238 Query 239 ATCATCATTCATTTCCTAACCAATACGCACTCCCACCGGGATTTGAACAGCCTCAGT-AC 297 ||| ||||||||||||||||| ||||||||| |||||||||||||||| | || || || Sbjct 239 ATCCGCATTCATTTCCTAACCAGTACGCACTCTCACCGGGATTTGAACAACGTC-GTTAC 297 Query 298 AAAGTTGATAGA-TCATACAAGATGTCCATGGTCTACAACCAATATGTGGGATCCTCAAG 356 |||||||||||| | |||| |||||||||||||||||||||||| ||||||| ||||| Sbjct 298 AAAGTTGATAGAATTG-ACAATATGTCCATGGTCTACAACCAATATATGGGATCTTCAAG 356 Query 357 CTCTAGCTTTGCAGGACTACAAAGTGACCCAAGTCAAGGAATGAACCAGGATTGGACCTT 416 |||| ||||| |||||||| |||||| ||||||||| ||||| ||| || || |||||| Sbjct 357 CTCTGGCTTTTTAGGACTACGAAGTGATCCAAGTCAAAGAATGGACCGGGGTTCGACCTT 416 Query 417 TACCGGGATCCCATTCCTACCCCAATCTCAACCTCAACCACTATCGTC---A-C--CA-- 468 || ||||||| ||| || | | ||| ||||||||||||| |||||||| | | || Sbjct 417 TAACGGGATCTCATCCCAAACTCAACCTCAACCTCAACCGCTATCGTCTGCATCGTCACC 476 Query 469 A-TATGTTTGGATCTTTGCCTTGGCATTGGTAGCTCCCAAACCCAACCACAACCTCAAGA 527 | | ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 477 AGTGTGTTTAGATCTTTGTCTTGGTGTTGGTAGCTCCCAAACCCAACCACAACCTGAAGA 536 Query 528 ACCAAATGATGCAACAGAAGAGATGGATGCTGAGAAAGAAAATGATGGTTCTTCCCTTTC 587 |||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 537 ACCAAACGATGCAACAGAAGAGATGGATGCTAAGAAAGAAAATGATGGTTCTTCTCTTTC 596 Query 588 TCTCTCACTCAAACTGTGA 606 |||||||||||| || ||| Sbjct 597 TCTCTCACTCAAGCTATGA 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22149414777 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5