BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05120.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325146 jgi|Araly1|325146|fgenesh1_pm.C_scaffold_6000366 706 0.0
> Ahg325146 jgi|Araly1|325146|fgenesh1_pm.C_scaffold_6000366
Length=615
Score = 706 bits (382), Expect = 0.0
Identities = 543/619 (88%), Gaps = 17/619 (3%)
Strand=Plus/Plus
Query 1 ATGTTGTCCTCGGACTCGAATTACGCTAGTGATATTAGCGACGATGCCTCCGCCACCGGA 60
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTTGTCCTCTGATTCGAATTACGCTAGTGATATTAGCGACAATGCCTCCGCCACCGGA 60
Query 61 TCGATAGAGAATCCTATATACAAATGCAAGTATTGTCCTAGGAAGTTCGATAAAACACAA 120
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCGATAGAGAATCCAATGTACAAATGCAAGTATTGTCCTAGGAAATTCGATAAAACACAA 120
Query 121 GCATTAGGTGGTCATCAAAATGCACACA-GAAAGGAGAGAGAGGTCGAAAAACAACAAAA 179
||||| ||||||||||||||||| |||| ||| |||||||| ||| |||||||||| |
Sbjct 121 GCATTGGGTGGTCATCAAAATGCTCACAAGAA-GGAGAGAGGGGTAAAAAAACAACATGA 179
Query 180 AGCATTTTTGGCGCATTTGAACCGACCAGAA-CCAGATCTTTACGCGTACTCGTATTCGT 238
||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| |
Sbjct 180 AGCATTTTTGGCGCATTTGAACCAACC-GAAACCAGACCTTTACTTGTACTCGTATTTGC 238
Query 239 ATCATCATTCATTTCCTAACCAATACGCACTCCCACCGGGATTTGAACAGCCTCAGT-AC 297
||| ||||||||||||||||| ||||||||| |||||||||||||||| | || || ||
Sbjct 239 ATCCGCATTCATTTCCTAACCAGTACGCACTCTCACCGGGATTTGAACAACGTC-GTTAC 297
Query 298 AAAGTTGATAGA-TCATACAAGATGTCCATGGTCTACAACCAATATGTGGGATCCTCAAG 356
|||||||||||| | |||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 298 AAAGTTGATAGAATTG-ACAATATGTCCATGGTCTACAACCAATATATGGGATCTTCAAG 356
Query 357 CTCTAGCTTTGCAGGACTACAAAGTGACCCAAGTCAAGGAATGAACCAGGATTGGACCTT 416
|||| ||||| |||||||| |||||| ||||||||| ||||| ||| || || ||||||
Sbjct 357 CTCTGGCTTTTTAGGACTACGAAGTGATCCAAGTCAAAGAATGGACCGGGGTTCGACCTT 416
Query 417 TACCGGGATCCCATTCCTACCCCAATCTCAACCTCAACCACTATCGTC---A-C--CA-- 468
|| ||||||| ||| || | | ||| ||||||||||||| |||||||| | | ||
Sbjct 417 TAACGGGATCTCATCCCAAACTCAACCTCAACCTCAACCGCTATCGTCTGCATCGTCACC 476
Query 469 A-TATGTTTGGATCTTTGCCTTGGCATTGGTAGCTCCCAAACCCAACCACAACCTCAAGA 527
| | ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 477 AGTGTGTTTAGATCTTTGTCTTGGTGTTGGTAGCTCCCAAACCCAACCACAACCTGAAGA 536
Query 528 ACCAAATGATGCAACAGAAGAGATGGATGCTGAGAAAGAAAATGATGGTTCTTCCCTTTC 587
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 537 ACCAAACGATGCAACAGAAGAGATGGATGCTAAGAAAGAAAATGATGGTTCTTCTCTTTC 596
Query 588 TCTCTCACTCAAACTGTGA 606
|||||||||||| || |||
Sbjct 597 TCTCTCACTCAAGCTATGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5