BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05140.1
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487303 jgi|Araly1|487303|fgenesh2_kg.6__437__AT5G05140.1 2634 0.0
Ahg915740 jgi|Araly1|915740|Al_scaffold_0008_491 551 8e-156
Ahg940650 jgi|Araly1|940650|scaffold_601194.1 316 3e-85
> Ahg487303 jgi|Araly1|487303|fgenesh2_kg.6__437__AT5G05140.1
Length=1989
Score = 2634 bits (1426), Expect = 0.0
Identities = 1592/1670 (95%), Gaps = 19/1670 (1%)
Strand=Plus/Plus
Query 438 ACGATGAAAGCATCGGGTTCATTAGATAGCTGGAGAGAATATTTCCGACGGCGAGGAGAT 497
|||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 329 ACGATGAAAGCATCAGGTTCGTTAGATAGCTGGAGAGAATATTT-C--CGGCGAGGAGAT 385
Query 498 TCCGATATATTCGGGATCATCGATCATGCGATCATGGTGGCTGCTACTGATTGTCCTAAC 557
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TCCGATATTTTCGGGATCATCGATCATGCGATCATGGTGGCTGCTACTGATTGTCCTAAC 445
Query 558 AAATTCAAATCCAGAAGAGACAAAATCGCCGAGCTTTTATTCTCCTGTAGAGTGAATCGT 617
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 446 AAATTCAAATCCAGAAGAGACAAAATCGCCGAGCTTTTATTCTCCTGCAGAGTGAGCCGC 505
Query 618 TGCGTCGGATGCGACCATCTTGAATTGTCTGTTCCCGGAGACGACGAGGCTAA------C 671
||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 506 TGCATCGGATGCGACCATCTCGAATTGTCTGTTCCCGGAGACGACGAGGGTAATCGCGGC 565
Query 672 CGTGGAACCACCGGAAATGGTGGTGGTGGTACGGCGGTTGATGAAGATTATGAGGTTGCT 731
|||||| ||||||| | || |||||||||||||||||||||||||||||||||| | |
Sbjct 566 CGTGGAGCCACCGGTGACGGCGGTGGTGGTACGGCGGTTGATGAAGATTATGAGG-T--T 622
Query 732 GGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGCAGAGGGGATAATAATCAGATTGTTAGC 791
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 623 GGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGCAGAGGAGATAGTAATCAGATTGTTAGC 682
Query 792 AATTATACATTTGATGAAGCTGAGGCTTTGAGTGATGAGATTGAAGAGTTTTCTGTGGTT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 AATTATACATTTGATGAAGCTGAGGCTTTGAGTGATGAGATTGAAGAGTTTTCTGTGGTT 742
Query 852 TCTAAGGAGGTTGCTAGGATCAAAGAGATCTTGCTCAACAAAGAAGATGAGCCAAACTCG 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TCTAAGGAGGTTGCTAGGATCAAAGAGATCTTGCTCAACAAAGAAGATGAGCCAAACTCG 802
Query 912 GTGTTACTCGATTCTTTAAGACATCTTAAGTTGATGTCTTTGAATGTGGATATTCTTAAG 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GTGTTACTCGATTCTTTAAGACATCTTAAGTTGATGTCTTTGAATGTGGATATTCTTAAG 862
Query 972 AGTACTGAGATTGGAAAGGCTGTTAATGGCCTCAGGAAACATTCTTCTGATAAGATTCGA 1031
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 863 AGTACTGAGATTGGAAAGGCTGTTAATGGCCTGAGGAAACATGGTTCTGATAAGATTCGA 922
Query 1032 CAACTCGCTAAGACTCTTATCGCAGAATGGAAGGAGTTGGTGGATCAATGGGTGAATACC 1091
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 923 CAACTCGCAAAGACTCTTATCGCAGAGTGGAAGGAGTTGGTGGACCAATGGGTGAATACC 982
Query 1092 ACAAAGGAAATCACTGGTGCTGAAGGTACACCAGAGTCTGCAAACCCGTCTGTCCTTGAT 1151
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 983 ACAAAGGAAATTACTGGTGCTGAAGGTACACCAGAGTCTGCAAACCCGTCTGTCGTTGAT 1042
Query 1152 GAAGAAGAGGCGTTTCCATCGCTTCCATATGATGTTGATATCTTTACACCTGAACCAAAC 1211
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1043 GAAGAAGAGGCGTTTCCATCGCTTCCATATGATGTTGACATCTTTACACCGGAACCAAAC 1102
Query 1212 GGATTTGAAATCTCACACTTCTTTGATTCCTTGGACTTTGATGGAAATCCTCGTAACTCT 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1103 GGATTTGAAATCTCACACTTCTTTGATTCCTTGGACTTTGATGGAAATCCTCGTAATTCT 1162
Query 1272 GAAGAACACAACACAAGCCGAGAGCATGAAAGAAGGCCACAAAATATCGCCAAGAGAAAA 1331
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1163 AAAGAATACAACACAAGCCGAGAGCACGAAAGAAGACCACAAAATATCGCCAAGAGAAGA 1222
Query 1332 CCTGAGGGAACACAAATGAGGATACAAGATGCTCCTTTTAGATCTATTAAGCCATCATCA 1391
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CCAGAGGGAACACAAATGAGGATACAAGATGCTCCTTTTAGATCTATTAAGCCATCATCA 1282
Query 1392 GCTACTGATTTTGATGGGACTAGAAGACCTGTAAAGCAAAGTACAGAGCAAAGGATGAAG 1451
| | ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1283 GATGCTGATTTTGATGGCACTAGAAGACCTCTAAAGCAAAATACAGAGCAAAGGATGAAG 1342
Query 1452 AACGAAACGGTATCTGTTCACAAGTCTGAAAAACCCATGATCCAAAGGAAACCGGTTGTT 1511
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AACGAAACGGTATCAGTTCTCAAGTCTGAAAAACCCATGATCCAAAGGAAACCGGTTGTT 1402
Query 1512 ACAGAACAGAAGCGGAAAGCTCCTGGACCTCAACAAGAAAAACTTAAAGGTCTTGATGCA 1571
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1403 ACAGAACAGAAGCGGAAAGCTCCCGGACCTCAACAAGAAAAACTTAAAGGTCTTGATGCA 1462
Query 1572 GACGCAAAGTTTGAGTTTGCAAAGAGGAAACTTCAAGAAAGCTACCAGCATCACGAGAAT 1631
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1463 GACGCAAAGTTTGAGTTTGCAAAGAGGAAACTTCAAGAGAGCTACCAGCATCATGAGAAT 1522
Query 1632 GCCAAGAAGCAGCGAACGATACAAGTACTTGAGATGATCCCAAAGCAAGGTAGTGCTCAG 1691
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 GCCAAGAAGCAGCGGACGATACAAGTACTTGAGATGATCCCAAAGCAAGGTAGTGCTCAG 1582
Query 1692 AAACCGCAACTCAAGAGACCTGGAATGAGCAACAGGAATTGGGCTAATGGGAGAAAATAG 1751
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1583 AAACCGCAACTCAAGAGACCTGGAATGAGCAACAGGAATTGGGCTAACGGGCGAAAATAG 1642
Query 1752 TTTCTGCTTTGTTCAAA-TGGTGAATAATTCTCGGCAAAAG--ATATTACTCCATACTTA 1808
|||| || ||| |||| |||||||||| |||||||||||| || ||||||||||||||
Sbjct 1643 CTTCTTCTCTGT-CAAAATGGTGAATAACTCTCGGCAAAAGTCATTTTACTCCATACTTA 1701
Query 1809 CCACACATATCTCGCAATCTCTGGTGCAATAAA-GGTAAACAGAGTCTAGTTCCACAAAG 1867
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1702 CCACACATATCTCGCAATCTCTGGTGCAATAAAAGGTAAACAGAGTCTAGTTCCACAA-G 1760
Query 1868 CTGGAGACAGAAACAAGCAGAGGAGAAGGAACAGAATCCAACATAACTTTACTTTGAACA 1927
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 CTGGATACAGTAACAAGCAGAGGAGAAGGAACAGAATCCAACATAACTTTACTTTGAACA 1820
Query 1928 AACTGTTTACTCCTCTGTTTTGTTCTGTCTTGGATTCACCAATTGCAGCAAGATAGGGAT 1987
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1821 AACTGTTTTCTCCTCTGTTTTGTTCAGTCTTGGATTCACCAATTGCAGCAAGATAGGGAT 1880
Query 1988 ACCAATTATTGTTTCTTTTATGTGTTCTTTACTACATTCTTGAGACTTTCGGTACAGTCC 2047
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1881 CCCAATTATTGTTTCTTTTATGTGTTCTT-ACTACATTCTTGAGACTTTCGGTACAGTGT 1939
Query 2048 CGGTTTAGTCGGGTTATGTTCGGTTTTGGGACAAGGAGAGAGGTCCCTTT 2097
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 CGGTTTAGTCGGGTTATGTTCGGTTTTGGGACAAGGAGAGAGGTCCCTTT 1989
> Ahg915740 jgi|Araly1|915740|Al_scaffold_0008_491
Length=447
Score = 551 bits (298), Expect = 8e-156
Identities = 403/448 (90%), Gaps = 29/448 (6%)
Strand=Plus/Plus
Query 531 ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAAAATCGCCGAG 590
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAGGAGACAAAATCGCCGAG 60
Query 591 CTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGAATTGTCTGTT 650
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 61 CTTTTATTCTCCTGCAGAGTGAGTCGTTGCATCGGATGCGACCATCTTGAATTGTCTATT 120
Query 651 CCCGGAGACGACGAGGCTAA------CCGTGGAACCACCGGAAATGGTGGTGGTGGTACG 704
| |||||||||||||||||| ||||||||||||||| | || ||||||||||||
Sbjct 121 CACGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGGTGGTGGTACG 180
Query 705 GCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGC 764
|||||||||||||||||||||| | |||||||||| || |||| ||| | | |||
Sbjct 181 GCGGTTGATGAAGATTATGAGG-T--TGGTGGTAGT-AA-AGAG---AGC--A-A--AGC 227
Query 765 AGAGGGGATAATAATCAGATTGTTAGCAA-TTATACATTTGATGAAGCTGAGGCTTTGAG 823
|||| ||||||||||||| || ||||||||||||||||||| | ||||||||
Sbjct 228 --------TAAT-ATCAGATTGTTAGTAATTTATACATTTGATGAAGCTCACGCTTTGAG 278
Query 824 TGATGAGATTGAAGAGTTTTCTGTGGTTTCTAAGGAGGTTGCTAGGATCAAAGAGATCTT 883
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 279 TGATGAGATTGAAGAGTTATCTGTGGTTTCTAAGGAGGTTGCTAGTATCAAAGAGATCTT 338
Query 884 GCTCAACAAAGAAGATGAGCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT 943
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GCTCAACAAAGAAGATGATCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT 398
Query 944 GATGTCTTTGAATGTGGATATTCTTAAG 971
||||||||||||||||||||||||||||
Sbjct 399 GATGTCTTTGAATGTGGATATTCTTAAG 426
> Ahg940650 jgi|Araly1|940650|scaffold_601194.1
Length=508
Score = 316 bits (171), Expect = 3e-85
Identities = 218/239 (91%), Gaps = 9/239 (4%)
Strand=Plus/Plus
Query 521 TCATGCGATCATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAA 580
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 11 TCATGCGATCATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCATAGGAGACAA 70
Query 581 AATCGCCGAGCTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGA 640
| ||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 71 ATTCGCCCAGCTTTTATTCTCCTGCAGAGTGGGTCGTTGCATCGGATGCGACCATCTTGA 130
Query 641 ATTGTCTGTTCCCGGAGACGACGAGGCTAA-C-CG----TGGAACCACCGGAAATGGTGG 694
|||||||||||||||||||||||||||||| | || |||||||||||| | || ||
Sbjct 131 ATTGTCTGTTCCCGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGG 190
Query 695 TGGTGGTACGGCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAG 753
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 191 TGGTGGTACGGCGGTTGATGAAGATTATGAGGTTG--G-TGGTAGTAAAGAGAGCAAAG 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79799063275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5