BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05150.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892438 jgi|Araly1|892438|Al_scaffold_0006_434 1653 0.0
> Ahg892438 jgi|Araly1|892438|Al_scaffold_0006_434
Length=1122
Score = 1653 bits (895), Expect = 0.0
Identities = 1042/1114 (94%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 1 ATGAATTCGATTGTCTCCACTGTCCGTGGAATCTTAACGCTTTCAAGATCTGAAACTTTC 60
||||||||||| |||||||||||||||||||| || |||||||||| |||||| || |||
Sbjct 1 ATGAATTCGATGGTCTCCACTGTCCGTGGAATATTCACGCTTTCAAAATCTGATAC-TTC 59
Query 61 -GATTCACCA-CGTGATGAAGCAAAAAGTGACTTGAAGGTGTTATCAGTAGCTTGGAACC 118
|||| ||| | ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 60 AAATTCGCCATC-TGATGAAGCCAAGAGTGACTTGAAGGTGTTATCAGTAGCTTGGAACC 118
Query 119 AGGTATGCAGTGGTTTCATCGTTGGAACAAATCACGGTTTCAATGTATATAGCTGCAAAC 178
||| ||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 119 AGGAATGGAGTGGTTTCATAGTTGGAACAAATCGCGGGTTCAATGTATATAGCTGCAAAC 178
Query 179 CAATGATAAAGAAAAGCATCAGCCGTGCCCCGCACGAATCAGGCTTCAAAGTTGCTGAGA 238
||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 179 CAATGATCAAGAAAAGCATCAGCCGTGAACCGCACGAATCAGGCTTCAAAGTCGCTGAGA 238
Query 239 TGCTCTTCCTTTCTAACTTATTCGCTTTTGTTGGCAATGGTTATAACAATTCCGAGTACC 298
||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||| |
Sbjct 239 TGCTCTTCCTTTCTAACCTATTTGCTCTTGTTGGAAATGGTTATAACAATTCCGAGTATC 298
Query 299 CTCCTAACAAAGTATTCGTTTGGGATGATTACCGAAATTGCTGCCTCAGCGAGCTCACTT 358
||||||||||||| ||||||||||| ||| || || |||||||||| | |||||| |||
Sbjct 299 CTCCTAACAAAGTCTTCGTTTGGGACGATCACAGATTTTGCTGCCTCCGTGAGCTCGCTT 358
Query 359 TTAAATCAGAAGTTATCGCTGTGAAACTAGCGAGAGAACACGTTGTGGTGGTCCTGAAAC 418
||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 359 TTAAATCAGAAGTTATCGCCGTGAAACTAACGAGAGAACACATTGTGGTTGTCCTGAAAC 418
Query 419 AAAACATCTATGTCTACACTTTCAACAACCTTAAGGTTGACCGTGTGATCGAAACCCTCA 478
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 419 AAAACATCTATGTCTACACTTTCAACAACCTTAAGGTTTACCGTCTGATCGAAACTCTCA 478
Query 479 TGAACCCGAAAGGACTGTGTTGCGTCACTCACGTTGAGTCGAAAGCAGTCTTGGCTTGTC 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAATCCGAAAGGACTGTGTTGCGTCACTCACGTTGAGTCGAAAGCAGTCTTGGCTTGTC 538
Query 539 CCGGGTTTCATCCGGGACAAGTTCAGGTCCATGACTTGAGATGGAATGTTATCAAATTCA 598
||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 539 CCGGGTTTCATCCGGGACAAGTTCAGGTCCACAACTTGAGACGGAATGTAATCAAATTCA 598
Query 599 TCAAAGCACATGATTCTGCTATAGCTTGCATGACTTTGACTCTCGATGGAAGTCTCCTCG 658
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 599 TCAAAGCACATGATTCTGCTATTGCTTGCATGACTTTTACTCTCGATGGAAGTCTCCTCG 658
Query 659 CAACCGCTAGCACCAAAGGAACTTTGATCAGGATCTTTAACGCCGTTGATGGTACTCTCT 718
||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 659 CAACCGCTAGCACGAAAGGAACCCTGATCAGGATTTTTAACGCAGTTGATGGTACTCTCT 718
Query 719 TACAAGAGTTTCGGAGAGGAGTGGAAAGAGCAGAGATCTATAACGTTGCAATCTCTTCGA 778
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TACAAGAGTTGCGGAGAGGAATGGAAAGAGCAGAGATCTATAACGTTGCAATCTCTTCAA 778
Query 779 ATCTGAAATGGGTCGCTGCGTCAAGTGAAAAAGGGACTCTCCATGTATTTCGTTTGAGAC 838
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCGGAAATGGGTCGCTGCGTCAAGTGAAAAAGGGACTCTCCATGTATTTCGTTTGAGAC 838
Query 839 CTGACATTCTTAGTTTTGATCCGGCTTCATCGTCGTCATTCAT-AAGAGTGATCTTACCA 897
||||||||||||||||| ||| |||||| |||||||||||||| || || |||||||||
Sbjct 839 CTGACATTCTTAGTTTTAATCTGGCTTCTTCGTCGTCATTCATGAA-AGGGATCTTACCG 897
Query 898 AAGTATTTGTACGAAAATGAACGGTCGTTTGCTCAGTTCTCGTTGCCAGCTTCCACCAAG 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGTACTTGTACGAAAATGAACGGTCGTTTGCTCAGTTCTCGTTGCCAGCTTCCACCAAG 957
Query 958 TTCATTGTAGGTTTTGGATCAGAGAACACTGTTCTTCTCGTAGGCATCGATGGAAGTTTC 1017
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 TTCATTGTAGGTTTTGGATCAGAGAACACTGTTCTTCTCCTAGGCATCGATGGAAGTTTC 1017
Query 1018 CGGAGGTGCAAATTTGATCATGCAGATGGAGGGCAGATGGTGGAATTGGAACACAAATAC 1077
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGGAGGTGCAAATTTGATCAAGCAGATGGAGGGCAGATGGTGGAATTGGAACACAAATAC 1077
Query 1078 TTCTTCTCCTTACAAGAGACGGGCAACACAATGG 1111
||||||||||| |||||||||||| |||||||||
Sbjct 1078 TTCTTCTCCTTGCAAGAGACGGGCGACACAATGG 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5