BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05160.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325150 jgi|Araly1|325150|fgenesh1_pm.C_scaffold_6000370 2994 0.0
> Ahg325150 jgi|Araly1|325150|fgenesh1_pm.C_scaffold_6000370
Length=1917
Score = 2994 bits (1621), Expect = 0.0
Identities = 1825/1924 (95%), Gaps = 12/1924 (1%)
Strand=Plus/Plus
Query 26 ATGAATTCTTCTCACACTGCCTTCGTTGCTGCTTCCTTCTTCTTCCTCTTACTCGCCGCA 85
|||| |||||||||||| |||| | ||||| |||||||||||||| |||||||| |||
Sbjct 1 ATGACTTCTTCTCACACCACCTTGGCGGCTGCCTCCTTCTTCTTCCTGTTACTCGCAGCA 60
Query 86 ACCGCGGTTTTGGTTTCAGCCGATTTAGCATCAGACGAACAAGCCCTTCTCAACTTTGCA 145
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ACCGCGGTTTTGGTTTCAGCCGATTTAGCATCAGACGAAGAAGCCCTTCTCAACTTTGCA 120
Query 146 GCATCAGTCCCACATCCACCAAAACTCAACTGGAACAAGAACCTCTCTCTCTGCTCTTCA 205
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 121 GCATCAGTCCCACATCCACCCAAACTCAACTGGAACAAGAACTTCTCTCTCTGCTCCTCA 180
Query 206 TGGATCGGCATTACTTGTGATGAATCCAACCCCACCAGCCGCGTTGTAGCTGTCCGTCTT 265
|||||||||||||| |||||||| ||||||| |||||||||||||||||| || ||||||
Sbjct 181 TGGATCGGCATTACCTGTGATGACTCCAACCGCACCAGCCGCGTTGTAGCAGTTCGTCTT 240
Query 266 CCAGGAGTTGGCCTCTACGGCTCAATCCCTCCTGCCACATTAGGCAAACTAGACGCTCTC 325
|| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 241 CCTGGAGTTGGCCTCTACGGCTCAATCCCACCTGCTACATTAGGCAAACTTGACGCTCTC 300
Query 326 AAAGTCCTTAGCCTCAGATCCAACTCTCTCTTTGGAACTTTACCTTCTGATATTCTCTCA 385
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAAGTCCTTAGCCTCAGATCCAACTCTCTCTTTGGAACTTTGCCTTCTGATATTCTCTCA 360
Query 386 CTCCCTTCTCTTGAATACCTTTATCTCCAACACAACAACTTCTCCGGCGAACTCACCACT 445
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 CTCCCTTCTCTTCAATACCTTTATCTCCAACACAACAACTTCTCCGGCGAACT---CACT 417
Query 446 AATTCTTTGCCGTCGATCTCCAAGCAGCTTGTTGTCTTGGACTTGTCTTATAACTCTTTA 505
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 AATTCTCTGCTGTCGATCTCCAAGCATCTTGTTGTCTTGGACTTGTCTTATAACTCTTTA 477
Query 506 TCTGGTAACATTCCTTCCGGTCTCCGGAACTTGTCTCAGATCACTGTATTGTACCTTCAA 565
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCTGGTAACATTCCTTCCGGTATCCGGAACTTGTCTCAGATCACTGTATTGTACCTTCAA 537
Query 566 AACAACTCTTTTGATGGTCCCATTGATTCTCTTGATCTCCCGAGTGTAAAAGTTGTAAAT 625
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 538 AACAACTCTTTTGATGGTCCAATTGATTCTCTTGATCTCCCAAGTGTAAAAGTTGTAAAT 597
Query 626 TTGAGCTATAACAACTTAAGTGGACCCATCCCTGAGCATCTCAA-GAAGTCACCGGAATA 684
||||||||||||||||| |||||||||||||||||||||||||| | | || |||||| |
Sbjct 598 TTGAGCTATAACAACTTGAGTGGACCCATCCCTGAGCATCTCAAGGGA-TCGCCGGAAAA 656
Query 685 TTCTTTCATCGGAAACTCATTACTATGTGGTCCACCTCTGAATGCATGTTCCGGAGGAGC 744
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 657 TTCTTTCATCGGAAACTCATTACTATGTGGTTTACCTCTGAATCCATGTTCCGGAAAAGC 716
Query 745 CATCTCTCCGTCTTCAAATTTGCCTAGACCGTTGACAGAGAATCTCCATCCTGTCCGGAG 804
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 717 CATCTCTCCGTCTTCAAATTTGCCAAGACCGTTGACAGAGAATCTCCATCCTGTTCGGAG 776
Query 805 GAGACAGAGTAAAGCTTATATAATCGCCATTGTAGTCGGATGCTCTGTGGCCGTTCTTTT 864
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 777 GAGACAGAGTAAAGCTTATATAATCGCCATTGTAGTCGGATGCTCTGTAGCCGTTCTTTT 836
Query 865 CCTTGGGATTGTTTTCTTGGTTTGTCTGGTGAAGAA-GACGAAGAAAGAAGAAGGAGGCG 923
|||||| ||||||||||| |||||||||||||| || |||||||||||||| | |||||
Sbjct 837 CCTTGGAATTGTTTTCTTAGTTTGTCTGGTGAA-AAGGACGAAGAAAGAAG-A--AGGCG 892
Query 924 GTGAAGGAGTGCGAACGCAGATGGGGGGAGTGAATAGCAAGAAACCGCAGGATTTCGGGA 983
||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 893 GTGAAGGAGGGCGAACGCAGATAGGTGGAGTGAATAGCAAGAAACCGCAGGATTTCGGGA 952
Query 984 GCGGAGTTCAAGATCCAGAGAAGAACAAGCTCTTCTTCTTCGAAAGATGCAATCATAATT 1043
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 953 GCGGAGTTCAAGATCCAGAGAAGAACAAGCTGTTCTTTTTCGAGAGATGCAATCACAATT 1012
Query 1044 TCGATCTTGAGGATCTCTTGAAAGCTTCTGCTGAAGTTCTTGGTAAAGGGAGTTTCGGAA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TCGATCTTGAGGATCTCTTGAAAGCTTCTGCTGAAGTTCTTGGTAAAGGGAGTTTCGGAA 1072
Query 1104 CGGCCTACAAGGCCGTGCTTGAGGACACAACCGCAGTGGTGGTGAAACGTTTAAGAGAAG 1163
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1073 CGGCCTACAAGGCTGTGCTTGAGGACACAACCGCAGTCGTGGTGAAACGTTTAAGAGAAG 1132
Query 1164 TCGTGGCGAGCAAGAAAGAGTTTGAACAGCAAATGGAGATAGTTGGGAAGATTAACCAGC 1223
||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1133 TCGTGGCTAGCAAGAAAGAGTTTGAACAGCAAATGGAGGTTGTTGGGAAGATTAACCAGC 1192
Query 1224 ATTCTAATTTCGTACCACTCCTCGCTTATTACTATTCGAAAGACGAGAAGCTATTGGTCT 1283
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1193 ATTCGAATTTCGTACCGCTCCTTGCTTATTACTATTCGAAAGACGAGAAGCTGTTGGTCT 1252
Query 1284 ACAAGTACATGACGAAAGGAAGCTTGTTCGGGATCATGCACGGAAACAGAGGAGACAGAG 1343
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1253 ACAAGTACATGACGAGAGGAAGCTTGTTCGGGATCATGCATGGAAACAGAGGAGACAGAG 1312
Query 1344 GAGTCGACTGGGAAACGCGGATGAAGATCGCGACAGGGACTTCAAAAGCAATCTCTTACC 1403
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1313 GAGTCGACTGGGAAACGCGGATGAAGATCGCGACTGGGACTTCAAAAGCAATCTCTTACC 1372
Query 1404 TTCACTCCTTAAAATTCGTTCACGGAGACATCAAATCATCAAACATACTTCTCACTGAAG 1463
||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1373 TTCACTCTTTGAAATTCGTTCACGGAGACATCAAATCGTCCAACATACTTCTCACTGAAG 1432
Query 1464 ACCTTGAGCCATGTCTGTCCGACACATCTTTAGTCACTCTCTTCAACCTTCCAACTCACA 1523
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1433 ACCTTGAGCCATGTCTATCGGACACATCTTTAGTCACACTCTTCAACCTCCCAACTCACA 1492
Query 1524 CACCGCGAACCATTGGCTACAATGCTCCTGAAGTTATTGAGACGAGGAGAGTCAGTCAAA 1583
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1493 CACCGCGAACCATCGGCTACAATGCTCCTGAAGCTATTGAGACAAGGAGAGTCAGTCAAA 1552
Query 1584 GATCAGACGTTTATAGCTTTGGTGTGGTGATTCTCGAAATGCTAACCGGGAAGACACCTT 1643
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GGTCAGACGTTTATAGCTTTGGTGTGGTGATTCTCGAAATGCTAACCGGGAAGACACCTT 1612
Query 1644 TAACTCAGCCTGGTCTCGAGGATGAGCGTGTCGTCATTGATCTTCCGAGATGGGTTCGGT 1703
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1613 TAACTCAGCCTGGTCTAGAGGATGAGCGTGTGGTCATTGATCTTCCAAGATGGGTTCGGT 1672
Query 1704 CTGTTGTGAGAGAAGAGTGGACTGCAGAGGTTTTCGATGTGGAGCTCTTGAAGTTTCAGA 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CTGTTGTGAGAGAAGAGTGGACTGCAGAGGTTTTCGATGTGGAGCTCTTGAAGTTTCAGA 1732
Query 1764 ACATTGAAGAGGAGATGGTTCAGATGCTTCAGCTAGCGTTGGCCTGTGTTGCAAGGAATC 1823
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1733 ACATAGAAGAGGAGATGGTTCAGATGCTTCAGCTAGCGTTGGCTTGTGTCGCAAGGAATC 1792
Query 1824 CAGAATCGAGGCCAAAGATGGAAGAGGTCGCGAGGATGATTGAAGATGTGAGGAGAT-TG 1882
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 1793 CAGAATCGAGGCCAAAGATGGAAGAGGTTGCAAGGATGATTGAAGATGTGAGGAGATGTG 1852
Query 1883 GATCAGTCTCAGCAGTTACAGCAAAACAGAACATCCTCAGAGGCTACTTCCAATGTCTCT 1942
||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1853 -ATCAGTCGCCGCAGTTACAGCAAAACATAACATCCTCAGAGGCTACTTCGAATGTCTCT 1911
Query 1943 GAAT 1946
||||
Sbjct 1912 GAAT 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5