BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05170.1
Length=3639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487306 jgi|Araly1|487306|fgenesh2_kg.6__440__AT5G05170.1 5834 0.0
Ahg932119 jgi|Araly1|932119|scaffold_400107.1 278 3e-73
> Ahg487306 jgi|Araly1|487306|fgenesh2_kg.6__440__AT5G05170.1
Length=3586
Score = 5834 bits (3159), Expect = 0.0
Identities = 3472/3618 (96%), Gaps = 41/3618 (1%)
Strand=Plus/Plus
Query 12 GAGACAAATAGCTTGCTCTTTGCATCTTCTTAGCCATCCCAAGATTCTCCTCTTCGTCTT 71
||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 2 GAGACAAATAGCTTGCTCTTTGCATCTTC-T----A----AAGATTCTCCTCTTCGTCTT 52
Query 72 CCTTA--TAAAC-TATCTCTCTGTAGAGAAGAAAGCTTGGATCCAGATTGAGAGAGATTC 128
||||| || || |||||||||| ||||||||||||| ||||||||| |||||||||||
Sbjct 53 CCTTACTTATACATATCTCTCTGCAGAGAAGAAAGCTCGGATCCAGAAAGAGAGAGATTC 112
Query 129 AGAGAGTCACATCACCACACTCCATCTTCAGATCTCATGATTTGAACTATTCCGACGTTT 188
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 113 AGAGAGTCACATCA-C-CACTCCTTCTTCAGATCTCATGATTTGAACTATTCCGACGTTT 170
Query 189 CGGTGTTGGAAGCAACTAAGTGAC-A--AATGGAATCCGAAGGAGAAACCGCGGGAAAGC 245
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 171 CGGTGTTGGAAGCAACTAAGTGACGACGAATGGAATCCGAAGGAGAAACCGCGGGGAAGC 230
Query 246 CGATGAAGAACATTGTTCCGCAGACTTGCCAGATCTGTAGTGACAATGTTGGCAAGACTG 305
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 231 CGATGAAGAATGTTGTTCCGCAGATTTGCCAGATCTGTAGTGACAATGTTGGCAAGACTG 290
Query 306 TTGATGGAGATCGTTTTGTGGCTTGTGATATTTGTTCATTCCCAGTTTGTCGGCCTTGCT 365
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 291 TTGATGGAGATCCTTTTGTGGCTTGTGATTTTTGTTCATTCCCAGTTTGTCGGCCTTGCT 350
Query 366 ACGAGTATGAGAGGAAAGATGGGAATCAATCTTGTCCTCAGTGCAAAACCAGATACAAGA 425
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ATGAGTATGAGAGGAAAGATGGGAATCAATCTTGTCCTCAGTGCAAAACCAGATACAAGA 410
Query 426 GGCTCAAAGGTAGTCCTGCTATTCCTGGTGATAAAGACGAGGATGGCTTAGCTGATGAAG 485
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GGCTCAAAGGTAGTGCTGCTATTCCTGGTGATAAAGACGAGGATGGCTTAGCTGATGAAG 470
Query 486 GTACTGTTGAGTTCAACTACCCTCAGAAGGAGAAA-ATTTCAGAGCGGATGCTTGGTTGG 544
|||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||
Sbjct 471 GTACTGTTGAGTTCAACTACCCGCAGAAGGA-AAAGATTTCAGAGCGGATGCTTGGATGG 529
Query 545 CATCTTACTCGTGGGAAGGGAGAGGAAATGGGGGAACCCCAGTATGATAAAGAGGTCTCT 604
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CATCTTACTCGTGGGAAAGGAGAGGAAATGGGGGAACCCCAGTATGATAAAGAGGTCTCT 589
Query 605 CACAATCATCTTCCTCGTCTCACGAGCAGACAAGATACTTCAGGAGAGTTTTCTGCTGCC 664
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 590 CACAATCATCTTCCTCGTCTCACGAGCAGACAAGATACTTCTGGAGAGTTTTCTGCTGCC 649
Query 665 TCACCTGAACGCCTCTCTGTATCTTCTACTATCGCTGGGGGAAAGCGCCTTCCCTATTCA 724
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 650 TCACCTGAACGCCTCTCTGTATCTTCTACTATTGCTGGTGGAAAGCGCCTTCCCTATTCA 709
Query 725 TCAGATGTCAATCAATCACCAAATAGAAGGATTGTGGATCCTGTTGGACTCGGGAATGTA 784
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 710 TCAGATGTCAATCAATCACCAAATAGAAGGATTGTGGATCCTGTTGGATTAGGGAATGTA 769
Query 785 GCTTGGAAGGAGAGAGTTGATGGCTGGAAAATGAAGCAAGAGAAGAATACTGGTCCTGTC 844
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GCTTGGAAGGAGAGAGTCGATGGCTGGAAAATGAAGCAAGAGAAGAATACTGGTCCTGTG 829
Query 845 AGCACGCAGGCTGCTTCTGAAAGAGGTGGAGTAGATATTGATGCCAGCACAGATATCCTA 904
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 830 AGCACGCAGGCTGCTTCTGAAAGAGGTGGAGGAGATATTGATGCCAGCACAGATATCCTC 889
Query 905 GCAGATGAGGCTCTGCTGAATGACGAAGCGAGGCAGCCTCTGTCAAGGAAAGTTTCAATT 964
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 890 GCAGATGAGGCTTTGCTGAATGATGAAGCGAGGCAGCCTCTGTCAAGGAAAGTTTCGATT 949
Query 965 CCTTCATCACGGATCAATCCTTACAGAATGGTTATTATGCTGCGGCTTGTTATCCTTTGT 1024
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 950 CCTTCATCACGGATCAATCCTTACAGAATGGTTATTATGTTGCGACTTGTTATCCTTTGT 1009
Query 1025 CTCTTCTTGCATTACCGTATAACAAACCCAGTGCCAAATGCCTTTGCTCTATGGCTGGTC 1084
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1010 CTCTTCTTGCATTACCGTATAACAAATCCAGTGCCAAATGCCTTTGCTCTTTGGCTGGTC 1069
Query 1085 TCTGTGATATGTGAGATCTGGTTTGCCTTATCCTGGATTTTGGATCAGTTTCCCAAGTGG 1144
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1070 TCTGTGATATGTGAGATTTGGTTTGCCCTATCCTGGATTTTGGATCAGTTTCCCAAGTGG 1129
Query 1145 TTTCCTGTGAACCGTGAAACCTACCTCGACAGGCTTGCTTTAAGATATGATCGTGAAGGT 1204
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1130 TTTCCTGTGAACCGCGAAACCTACCTCGACAGGCTTGCGTTAAGATATGATCGTGAAGGT 1189
Query 1205 GAGCCATCACAGTTAGCTGCTGTTGACATTTTCGTGAGTACTGTTGACCCCTTGAAGGAG 1264
||||| || |||||||| || ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1190 GAGCCGTCTCAGTTAGCCGCAGTTGACATTTTTGTGAGTACTGTCGACCCCTTGAAGGAG 1249
Query 1265 CCACCCCTTGTGACAGCCAACACAGTGCTCTCTATTCTGGCTGTTGACTACCCAGTTGAC 1324
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1250 CCACCCCTTGTGACAGCCAACACAGTTCTCTCCATTCTGGCTGTTGACTACCCGGTTGAC 1309
Query 1325 AAGGTGTCCTGTTATGTTTCTGATGATGGTGCTGCTATGTTATCATTTGAATCACTTGCA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1310 AAGGTGTCCTGTTATGTTTCTGATGATGGTGCTGCTATGTTATCATTTGAAGCACTTGCA 1369
Query 1385 GAAACATCAGAGTTTGCTCGTAAATGGGTACCATTTTGCAAGAAATATAGCATAGAGCCT 1444
|||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||
Sbjct 1370 GAAACATCAGAGTTTGCTCGGAAATGGGTACCATTCTGCAAGAAATATTGCATTGAGCCT 1429
Query 1445 CGTGCACCAGAATGGTACTTTGCTGCGAAAATAGATTACTTGAAGGATAAAGTTCAGACA 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CGTGCACCAGAATGGTACTTTGCTGCGAAAATAGATTACTTGAAGGATAAAGTTCAGACA 1489
Query 1505 TCATTTGTCAAAGATCGTAGAGCTATGAAGAGGGAATATGAGGAATTTAAAATCCGAATC 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TCATTTGTCAAAGATCGTAGAGCTATGAAGAGGGAATATGAGGAATTTAAAATCCGAATC 1549
Query 1565 AATGCACTTGTTTCCAAAGCCCTAAAATGTCCTGAAGAAGGGTGGGTTATGCAAGATGGC 1624
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AATGCACTTGTTTCCAAGGCCCTAAAATGTCCTGAAGAAGGGTGGGTTATGCAAGATGGT 1609
Query 1625 ACACCGTGGCCTGGAAATAATACAAGGGACCATCCAGGAATGATCCAGGTCTTCTTAGGG 1684
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1610 ACACCGTGGCCTGGAAATAATACAAGGGACCATCCAGGAATGATCCAGGTATTCTTAGGG 1669
Query 1685 CAAAATGGTGGACTTGATGCAGAGGGCAATGAGCTCCCGCGTTTGGTATATGTTTCTCGA 1744
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1670 CAAAATGGTGGACTTGATGCAGAGGGCAACGAGCTTCCGCGTTTGGTGTATGTTTCTCGA 1729
Query 1745 GAAAAGCGACCAGGATTCCAGCACCACAAAAAGGCTGGTGCTATGAATGCACTGGTGAGA 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1730 GAAAAGCGACCAGGATTCCAGCACCACAAAAAGGCTGGTGCTATGAATGCACTTGTTAGA 1789
Query 1805 GTTTCAGCAGTTCTTACCAATGGACCTTTCATCTTGAATCTTGATTGTGATCATTACATA 1864
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1790 GTTTCAGCAGTCCTTACCAATGGACCTTTCATCTTGAATCTCGATTGTGATCATTACATA 1849
Query 1865 AATAACAGCAAAGCCTTAAGAGAAGCAATGTGCTTCCTGATGGACCCAAACCTCGGGAAG 1924
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1850 AATAACAGCAAAGCTTTAAGAGAAGCAATGTGTTTCCTGATGGACCCGAACCTCGGGAAG 1909
Query 1925 CAAGTTTGTTATGTTCAGTTCCCACAAAGATTTGATGGTATCGATAAGAACGATAGATAT 1984
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1910 CAAGTTTGCTATGTTCAGTTCCCACAAAGATTCGATGGTATTGATAAGAACGATAGATAT 1969
Query 1985 GCTAATCGTAATACCGTGTTCTTTGATATTAACTTGAGAGGTTTAGATGGGATTCAAGGA 2044
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 GCTAATCGTAATACTGTGTTCTTTGATATTAACTTGAGAGGTTTAGATGGGATTCAAGGA 2029
Query 2045 CCTGTATATGTCGGAACTGGATGTGTTTTCAACAGAACAGCATTATACGGTTATGAACCT 2104
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2030 CCTGTATATGTGGGAACTGGGTGTGTTTTCAACAGAACAGCATTATATGGTTATGAACCT 2089
Query 2105 CCAATAAAAGTAAAACACAAGAAGCCAAGTCTTTTATCTAAGCTCTGTGGTGGATCAAGA 2164
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 CCAATAAAGGTAAAACACAAGAAGCCAAGTCTTTTATCTAAGCTCTGTGGTGGATCAAGA 2149
Query 2165 AAGAAGAATTCCAAAGCTAAGAAAGAGTCGGACAAAAAGAAATCAGGCAGGCATACTGAC 2224
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2150 AAGAAGAATTCCAAAGCTAAGAAAGAATCGGACAAAAAGAAATCAGGCAGGCATACTGAC 2209
Query 2225 TCAACTGTTCCTGTATTCAACCTCGATGACATAGAAGAGGGAGTTGAAGGTGCTGGTTTT 2284
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 TCAACTGTTCCTGTGTTCAACCTCGATGACATAGAAGAGGGAGTTGAAGGTGCTGGTTTT 2269
Query 2285 GATGATGAAAAGGCGCTCTTAATGTCGCAAATGAGCCTGGAGAAGCGATTTGGACAGTCT 2344
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2270 GACGATGAAAAGGCGCTCTTGATGTCGCAAATGAGCCTGGAGAAGCGATTTGGACAGTCT 2329
Query 2345 GCTGTTTTTGTTGCTTCTACCCTAATGGAAAATGGTGGTGTTCCTCCTTCAGCAACTCCA 2404
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2330 GCTGTTTTTGTTGCTTCTACCCTGATGGAAAATGGGGGTGTTCCTCCTTCAGCAACTCCA 2389
Query 2405 GAAAACCTTCTCAAAGAGGCTATCCATGTCATTAGTTGTGGTTATGAGGATAAGTCAGAT 2464
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2390 GAAAACCTTCTCAAAGAGGCTATCCATGTCATTAGTTGTGGTTACGAGGATAAGTCAGAT 2449
Query 2465 TGGGGAATGGAGATTGGATGGATCTATGGTTCTGTGACAGAAGATATTCTGACTGGGTTC 2524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2450 TGGGGAATGGAGATTGGATGGATCTATGGTTCTGTGACAGAAGATATTCTGACTGGGTTC 2509
Query 2525 AAAATGCATGCCCGTGGATGGCGATCCATTTACTGCATGCCTAAGCTTCCAGCTTTCAAG 2584
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 2510 AAAATGCATGCCCGTGGATGGCGTTCCATTTACTGTATGCCAAAGCTTCCAGCTTTCAAG 2569
Query 2585 GGTTCTGCTCCTATCAATCTTTCAGATCGTCTGAACCAAGTGCTGAGGTGGGCTTTAGGT 2644
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2570 GGGTCTGCTCCTATCAATCTTTCAGATCGTCTGAACCAAGTGCTGAGGTGGGCTCTAGGT 2629
Query 2645 TCAGTTGAGATTCTCTTCAGTCGGCATTGTCCTATATGGTATGGTTACAATGGGAGGCTA 2704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2630 TCAGTTGAGATTCTCTTCAGTCGGCATTGTCCTATATGGTATGGTTACAATGGGAGGCTG 2689
Query 2705 AAATTTCTTGAGAGGTTTGCGTATGTGAACACCACCATCTACCCTATCACCTCCATTCCT 2764
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 2690 AAATTTCTTGAGAGGTTTGCATATGTGAACACCACCATCTACCCAATCACCTCCATCCCT 2749
Query 2765 CTTCTCATGTATTGTACATTGCCAGCCGTTTGTCTCTTCACCAACCAGTTTATTATTCCT 2824
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2750 CTTCTCATGTATTGTACATTGCCCGCCGTTTGTCTCTTCACCAACCAGTTTATTATTCCT 2809
Query 2825 CAGATTAGTAACATTGCAAGTATATGGTTTCTGTCTCTCTTTCTCTCCATTTTCGCCACG 2884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810 CAGATTAGTAACATTGCAAGTATATGGTTTCTGTCTCTCTTTCTCTCCATTTTCGCCACG 2869
Query 2885 GGTATACTAGAAATGAGGTGGAGTGGCGTAGGCATAGACGAATGGTGGAGAAACGAGCAG 2944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2870 GGTATACTAGAAATGAGGTGGAGTGGCGTAGGCATAGACGAATGGTGGAGAAACGAGCAG 2929
Query 2945 TTTTGGGTCATTGGTGGAGTATCCGCTCATTTATTCGCTGTGTTTCAAGGTATCCTCAAA 3004
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2930 TTTTGGGTCATTGGTGGAGTATCCGCTCACTTATTCGCCGTGTTTCAAGGTATCCTCAAA 2989
Query 3005 GTCCTTGCCGGTATTGACACAAACTTCACAGTTACCTCAAAAGCTTCAGATGAAGACGGA 3064
|||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 2990 GTCCTTGCTGGTATTGACACGAACTTCACAGTCACCTCAAAAGCTTCAGACGAAGACGGA 3049
Query 3065 GACTTTGCTGAGCTCTACTTGTTCAAATGGACAACACTTCTGATTCCGCCAACGACGCTG 3124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3050 GACTTTGCCGAGCTCTACTTGTTCAAATGGACAACACTTCTGATTCCGCCAACGACGCTG 3109
Query 3125 CTCATTGTAAACTTAGTGGGAGTTGTTGCAGGAGTCTCTTATGCTATCAACAGTGGATAC 3184
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3110 CTCATTGTAAACCTAGTGGGAGTTGTTGCAGGAGTCTCTTATGCTATCAACAGTGGGTAC 3169
Query 3185 CAATCATGGGGACCACTCTTTGGTAAGTTGTTCTTTGCCTTCTGGGTGATTGTTCACTTG 3244
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 3170 CAATCATGGGGACCACTCTTTGGTAAGTTGTTCTTTGCGTTTTGGGTGATTGTTCACTTG 3229
Query 3245 TACCCTTTCCTCAAGGGTTTGATGGGTCGACAGAACCGGACTCCTACCATTGTTGTGGTC 3304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3230 TACCCTTTCCTTAAGGGTTTGATGGGTCGACAGAACCGGACTCCTACCATTGTTGTGGTC 3289
Query 3305 TGGTCTGTTCTCTTGGCTTCTATCTTCTCGTTGTTGTGGGTTAGGATTGATCCCTTCACT 3364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3290 TGGTCTGTTCTCTTGGCTTCCATCTTCTCGTTGTTGTGGGTTAGGATTGATCCCTTCACT 3349
Query 3365 AGCCGAGTCACTGGCCCGGACATTCTGGAATGTGGAATCAACTGTTGAGAAGCGAGCAAA 3424
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3350 AGCCGAGTCACTGGCCCGGACATTCTGGAATGTGGAATCAACTGTTGAGAAGTGGGCAAA 3409
Query 3425 TATTTACCTGTTTTGAGGGTTaaaaaaaaCACAGAatttaaattatttttcattgtttta 3484
|||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 3410 TATTTACCTGTTTTGAGGGTTAAAAAAA--------TTT---T-------CATTGTTTTA 3451
Query 3485 tttgttcacttttttacttttgttgtgtgtA-TCTGTCTGTTCGTTCTTCTGTCTTGGTG 3543
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 3452 TTTGTTCACTTTTTTACTTTTGTTGTGTGTAAT-TGTCTGTTCGTTCTTCTGTCTTGGTG 3510
Query 3544 TCATAAATTTATGTGTAGAATATATCTTACTCTAGTTACTTTGGAAAGTTATAATTAAAG 3603
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 3511 TCATAAATTTATGTGTAGAATAT--CTTACTCTAGTTACTTTGAAAAGTTATAATTAAAG 3568
Query 3604 TGAAAGCGAATAtttttt 3621
||||||||||||||||||
Sbjct 3569 TGAAAGCGAATATTTTTT 3586
> Ahg932119 jgi|Araly1|932119|scaffold_400107.1
Length=3310
Score = 278 bits (150), Expect = 3e-73
Identities = 780/1072 (73%), Gaps = 91/1072 (8%)
Strand=Plus/Plus
Query 2321 CTGGAGAAGCGATTTGGACAGTCTGCTGTTTTTGTTGCTTCTACCCTAATGGAAAATGGT 2380
||||||||| |||||| || || | |||||||| |||||||| || || |||||||
Sbjct 2199 CTGGAGAAGAAATTTGGTCAATCACCGGTTTTTGTAGCTTCTACTCTTCTGCTAAATGGT 2258
Query 2381 GGTGTTCCT--CCTTCAGCAACTCCAGAAAACCTT-CTCAAAGAGGCTATCCATGTCATT 2437
|| || ||| | | | ||| |||| | | || | | ||| | || || || |||
Sbjct 2259 GGAGTGCCTAGCAATGTG-AAC-CCAG-CATCTTTATTGAGAGAATCCATTCAAGTTATT 2315
Query 2438 AGTTGTGGTTATGAGGATAAGTCAGATTGGGGAATGGAGATTGGATGGATCTATGGTTCT 2497
|| ||||| || || || || | || ||||||| |||||||| ||||| ||||| ||
Sbjct 2316 AGCTGTGGATACGAAGAGAAAACCGAATGGGGAAAAGAGATTGGGTGGATATATGGATCG 2375
Query 2498 GTGACAGAAGATATTC-TGACTGGG-TTCAAAATGCA-TGCCCGTGGATGGCGATCCATT 2554
||||| ||||||| || |||| ||| ||||| ||||| || || ||||||| |||| |
Sbjct 2376 GTGACTGAAGATA-TCTTGAC-GGGTTTCAAGATGCACTG-CCATGGATGGAGATCTGTG 2432
Query 2555 TACTGCATGCCTAAGCTTCCAGCTTTCAAGGGTTCTGCTCCTATCAATCTT-TCAGATCG 2613
|| || ||||| |||| | |||||||| || |||||||| || || ||| ||||||||
Sbjct 2433 TATTGTATGCCAAAGCGAGCGGCTTTCAAAGGATCTGCTCCGATTAA-CTTGTCAGATCG 2491
Query 2614 TCTGAACCAAGTGCTGA-GGTGGGC-TTTAGGTTCAGTTGAGATTCTCTTCAGTC-GGCA 2670
||| | ||||| || | | ||||| || ||||| || |||||| |||| || | ||||
Sbjct 2492 TCTTCATCAAGTTCT-ACGTTGGGCACTT-GGTTCTGTAGAGATTTTCTTGAG-CAGGCA 2548
Query 2671 TTGTCCTATATGGTATGGTTACAATGG-GAGGCTAAAATTTCTT-GAGAGGTT-TGCGTA 2727
||| || || ||||||||||| || | || ||||| | || || || || | ||||
Sbjct 2549 TTGCCCGATTTGGTATGGTTATGGCGGCG-GGTTAAAA-TGGTTGGAAAGATTCT-CGTA 2605
Query 2728 TGTGAACACCACCATCTACCCTAT-CACCTCCATTCCTC-TT-CTCATGTATTG-TACA- 2782
| ||| | |||| ||| | || ||| ||| | || || | || || | ||
Sbjct 2606 CATTAACTCTGTTGTCTATCCT-TGGACATCC-CTCC-CGTTGCTTGTCTACTGCT-CAC 2661
Query 2783 TTGCCAGCCGTTTGTCT-CTTCACC--AACCAGTTTATTATTCCTCAGATTAGTAACAT- 2838
|| |||||| ||||| | | ||||| || | || || | ||| |||| |||||| |
Sbjct 2662 TT-CCAGCCATTTGTTTAC-TCACCGGAA--AATTCATCGTCCCTGAGATAAGTAAC-TA 2716
Query 2839 TGCAAGTATATGGT-TTC-TGTCTCTCT-TTC-TCTCCATTTTC-GCCACGGGTATACTA 2893
|| |||| | | ||| || || | ||| | |||| || | | || ||||||||
Sbjct 2717 CGCGGGTAT-T-CTCTTCATG-CT-AATGTTCATGTCCA-TTGCGGTAACTGGTATACTC 2771
Query 2894 GAAATG-AGGTGGAGTGGCGTAGGCATAGACGAATGGTGGAGAAACGAGCAGTTTTGGGT 2952
|||||| | ||| | ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 2772 GAAATGCA-ATGGGGCAAAGTAGGAATCGACGATTGGTGGAGAAACGAGCAGTTTTGGGT 2830
Query 2953 CATTGGTGGAGTATCCGCTCATTTATTCGCTGTGTTTCAAGGTATCCTCAAAGTCCTTGC 3012
|||||| ||||| || ||||| |||| ||| ||||||||||| | |||||||| |||||
Sbjct 2831 CATTGGAGGAGTCTCTTCTCATCTATTTGCTCTGTTTCAAGGTTTACTCAAAGTTCTTGC 2890
Query 3013 CGGTATTGA-CACAAACTTCACAGTTACCTCAAAAGCTTCAGATGAAGACGGAGACTT-T 3070
|| | | | ||||||||||||||| || |||||||| ||||||| | | ||| || |
Sbjct 2891 AGG-AGTCAACACAAACTTCACAGTCACATCAAAAGCAGCAGATGATG--G-AGAGTTCT 2946
Query 3071 GCTGAGCTCTACTTGTTCAAATGGACAACACTTCT-GATTCCGCCAACGACGCTGCTCAT 3129
| ||||| ||| | |||||||||||| | ||| | |||||| || || || || || ||
Sbjct 2947 -CAGAGCTTTACATCTTCAAATGGACATC-CTTGTTGATTCCTCCGACTACTCTACTGAT 3004
Query 3130 TGTAAACTTAGTGGGAGTTGTTG-CAGGAGTCTCTTATGCTATCAACAGTGGATACCAAT 3188
| ||| | || ||||| ||| | ||||| || |||| ||||| | || || | |
Sbjct 3005 CATTAACATCGTCGGAGTCATTGTC-GGAGTTTCAGATGCGATCAATAACGGGTATGACT 3063
Query 3189 CATGGGGACCACTCTTT-GGTA-AGTTGTTCTTTGC-CTTCTGGGTGATTGTTCACTTGT 3245
| |||||||| || ||| || | | || |||||||| ||| |||||||||||||| ||||
Sbjct 3064 CTTGGGGACCGCT-TTTCGGGAGA-TTATTCTTTGCGCTT-TGGGTGATTGTTCATTTGT 3120
Query 3246 ACCCTTTCCTCAA-GGGTTTGAT-GGGTCGACA-GA-ACCGGACTCCTACCATTGT-TGT 3300
| || |||||||| ||||| | | ||| ||| || | | || | |||||| | | |
Sbjct 3121 ATCCATTCCTCAAAGGGTT-GCTTGGGAA-ACAAGATAGAGTAC-CA-ACCATTATAT-T 3175
Query 3301 GGTCTGGTCTG-TTCT-CTTGGCTTCTATCTT--CTCGTTGTTGTGGGTTAG 3348
||| ||||| | |||| |||| |||| ||||| ||| | |||||||||||
Sbjct 3176 GGTTTGGTC-GATTCTTCTTG-CTTCGATCTTGACTC-TC-TTGTGGGTTAG 3223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137463953676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5