BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05180.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892441 jgi|Araly1|892441|Al_scaffold_0006_437 1066 0.0
> Ahg892441 jgi|Araly1|892441|Al_scaffold_0006_437
Length=1221
Score = 1066 bits (577), Expect = 0.0
Identities = 665/708 (94%), Gaps = 4/708 (1%)
Strand=Plus/Plus
Query 690 TGAGGTGAGTAGGGACTGTTTAGATGTGTCATTTTCTGAAATCTCTAAGCTAAGGGAAAT 749
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 516 TGAGGTGAGTAGGGACTGTTTAGATGTGTCATATGCTGAGATCTCTAAGCTAAGGGAAAT 575
Query 750 GTTGTGTGATTGTCAGCAAAATTTCTCTATTGAGAAAACAAAACTGGTAGATCAGATA-- 807
|||||||||||||||||||| ||| |||||||||| ||||||| | | ||| | ||||
Sbjct 576 GTTGTGTGATTGTCAGCAAAGTTTTTCTATTGAGATAACAAAA-TTGCAGA-CTGATATT 633
Query 808 AAGCATTCTGAGGCAGAGAAAATGGAGATGCAGAGGAAAGAGGTTGAGTTGCAAGCTGAA 867
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 634 AAGCATTCTGAGGCAGAGAAAATGGAGATGCAGAGAAAAGAGGTTGAGTTGCTAGCTGAA 693
Query 868 ATCAGTGCATTGAAGACAGACTTGGCCACACGTGGTGAGCATATTGAAGCATTAAACAAA 927
| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 694 AACAATGCATTGAAGACACATTTGGCCACACGTGGTGAGCATATTGAAGCATTAAACAAA 753
Query 928 GATTTCGACAAGCACAAGCTGAGGTACGACATGTTAATGGCAGAGAAAGACGGAGTATGT 987
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 754 GATTTCGACAAGCAGAAGCTGAGGTACGACATGTTAATGGCAGAGAAAGATGGAGTCTAT 813
Query 988 GCTGAAGTAGACAATCTAAAAGCAGAGATGAGATCAAGAGACATCCAAATTCAGCAAATG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GCTGAAGTAGACAATCTAAAAGCAGAGATGAGATCAAGAGACATCCAAATTCAGCAAATG 873
Query 1048 GAGGAGCAACTTAACCAGCTGGTCTATAAGCAGACAGAGCTTGTGTCTGAATCAGGAAAT 1107
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 874 GAGGAGCAACTTAACCAACTGGTCTATAAGCAGACCGAGCTTGTGTCTGAATCAAGAAAT 933
Query 1108 GCCAAGAACACTGTTGAGGAACTGAAAGCTGTGGTTAAAGAACTGGAGATTGAAGTAGAG 1167
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 934 GCCAAGAACACTGTTGAGCAACTGAAAGCTGTGGTTAAAGAACTGGAGAATGAAGCAGAG 993
Query 1168 CTGCAGAGTAAGGCCAAGAAAACTGTGGAGGAACTGAGAGCTACGGTCTGGGAAATGGAG 1227
||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 994 ATGCAGAGTAAGGCTAAGAAAACTGTGGAGGAACTGAGAGCTACGGTGTGGGAACTGGAG 1053
Query 1228 AAGCATGCAGAGTTGCAGAGGAATGCGATATCACAAGGAGAGGAAGAGAAACGAGAGGCG 1287
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1054 AAGCAAGCAGAGTTTCAGAGGAATGCGATATCAGAAGGAGAGGAAGAGAAACGAGAGGCG 1113
Query 1288 ATTAGACAGCTTTGTTTCTCTCTGGATCATTACAAAAGCGGATATAAACAGCTTTTGTGG 1347
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1114 ATTAGACAGCTTTGTTTCTCTCTGGATCATTACAAAAGCGGATATAGACAGCTTTTGAGG 1173
Query 1348 TATCTTTCGGGCAATAACCAGCAACATCAAACAACCATGGTCGTGTGA 1395
| ||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 1174 TTTCTTTCGGGTAATAACCAGCAACATCACGCAACCATAGTCGTGTGA 1221
Score = 449 bits (243), Expect = 2e-125
Identities = 347/397 (87%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 257 ATCATGATTCTAACTCTTCTTATTCCGATTTAGATTCGGACACGGAGGCCTTTTACTCAT 316
|||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 122 ATCATGATTCCGTCTCTTCTTATTCCGAGTTAGATTCGGAAACAGAGGCCTTTTACTCAT 181
Query 317 CTTTTAACCATCACCTCGTATCACCAGGGTCAATGGATAGCCATGACTTATCCCCGGAGA 376
|| ||||||||||||| || ||||||||| |||||||||||||||||||| | | || |
Sbjct 182 CTCTTAACCATCACCTGGTCTCACCAGGGGCAATGGATAGCCATGACTTAGCTGCTGAAA 241
Query 377 AACAAATGAGTTATGAAGAATTGATGAAGAAATATGTCCAGTGTGAAGAAGAGCTTAGGA 436
|||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 242 AACAAATGAGTTATGATGACTTGATGAAGAAATATGTCCAGTGTGAGGAAGAGCTAAGGA 301
Query 437 CTACGAGTTTGAAA-CTTCAAGAATTTGAGCAAGAGATTGAGAAAC-TAA-AG-GAGACC 492
|||||||||| ||| || ||||||| ||| |||||||||||||| | ||| || ||||||
Sbjct 302 CTACGAGTTT-AAAGCTCCAAGAATCTGAACAAGAGATTGAGAAGCTTAAGAGTGAGACC 360
Query 493 GAGAAAAAAGAATCGGTTGTTCTGTTTGGCGAGTATCTACGTGGTGAGCGAGAAATC-GC 551
|||| |||||||| | ||||||| || |||| ||||| ||| ||||| |||| | ||
Sbjct 361 AAGAAGAAAGAATCTGATGTTCTGCTTACCGAGAATCTATGTGCTGAGCTTGAAA-CTGC 419
Query 552 ACAAGGAGAAATTGCGATTAGGGACATAGCTATTGAGACTGAGAGAAAGCGAGTTCTCGA 611
|| |||||||||| || ||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 420 TCAGGGAGAAATTGAGACTAGGGACATAGCTATTGAGGCTGAGAGAAGGCGAGTTCTCCA 479
Query 612 GGTGCAAAGACAGGTGGTTGATTTGGAAACTGAGCTT 648
||||||||||||||||||||||||||||||||| |||
Sbjct 480 GGTGCAAAGACAGGTGGTTGATTTGGAAACTGAACTT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5