BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05210.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487312 jgi|Araly1|487312|fgenesh2_kg.6__446__AT5G05210.1 1544 0.0
> Ahg487312 jgi|Araly1|487312|fgenesh2_kg.6__446__AT5G05210.1
Length=1517
Score = 1544 bits (836), Expect = 0.0
Identities = 940/988 (95%), Gaps = 16/988 (2%)
Strand=Plus/Plus
Query 575 TGATGATGACAGTAAGGAGGAAACAGATAATAACAGACAAAAGGATGATCGATCTGTTAC 634
||||||||||||| ||||||||||||| || ||||||||||||||| ||| |||||||||
Sbjct 535 TGATGATGACAGTGAGGAGGAAACAGACAACAACAGACAAAAGGATCATCAATCTGTTAC 594
Query 635 GTACGAAGAGCTAAGGGAACGCCTCCACCGCAAAATTGATGAGCTCAAAGGTGGTCGTGG 694
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 595 GTACGAAGAGCTGAGGCAACGTCTCCACCGCAAAATTGATGAGCTCAAAGGTGGTCGTGG 654
Query 695 AGGTTCAGATAGACCAAGAAGCAATGAAAGAAGGAAGAAGAATCTGCCAAATAAGAGAAA 754
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 655 AGGTTCAGATAGACCAAGAAGCAATGAGAGAAGGAAGAAGATTCTGCCAAATAAGAGAAA 714
Query 755 GAGGGATACAGTTTCTGAGGAGAAGACTGTGGAGGAGATTAAGTCAGCAGATAAAGGTAA 814
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 715 GAGGGATACAGTTTCTGAGGAGAAGACAGTGGAGGAAAAGAAGTCAGCAGATAAAGGTAA 774
Query 815 GGGTAAGTTGGATGTGGAGGAGGCTGCTAAGGACCTTACATTTGGTTATGTCAAGATTGA 874
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 GGGTAAGTTGGATGTGGAGGAGGCTGCTAAGGACCTTACATTTGGTTACGTCAAGATTGA 834
Query 875 TGACGATGAAGAACACGGAAAAGAGAAAAAGAAACGAAGGCTTTCAAAGGCAAGAGAACT 934
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 835 TGACGATGAAGAACACGGAAAAGAGAAAAAGAAACGGAGGCTTTCAAAGGCAAAAGAACT 894
Query 935 TGAAAGGGCTATGAAGTTAGAGGCTGCAAAGAAGGATCCAGAAAAAGGTGATGTAATTGC 994
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 895 TGAAAGGGCTATGAAGTTAGAGGATGCAAAGAAGGATCCAGAAAAAGGAGATGTAATTGC 954
Query 995 AAAGAAGCACTCATGGAAGGCAGCTACAAGCAGAGCAGCTGGTATCAAGGTTCATGATGA 1054
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 955 AAAGAAGCACTCATGGAAGGCAGCTACAAGCAGGGCAGCTGGTATCAAGGTTCATGATGA 1014
Query 1055 CCCAAAGCTATTGAAGCAAAGCATCCACAAAGACAAAAAGAGGCAAGAGAAGAACGCAGA 1114
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1015 CCCAAAGCTATTGAAGCAAAGCATCCACAAAGACAAGAAGAGGCACGAGAAGAACGCAGA 1074
Query 1115 GAAGTGGAAAGAGAGAATTGAAGGGCAACAAAAGTTCAAGGTGGAGAAGCAGCAAAAGAG 1174
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GAAGTGGAAAGAGAGAGTTGAAGGGCAACAAAAGTTCAAGGTGGAGAAGCAGCAAAAGAG 1134
Query 1175 ATCAGGGAATATTGCCGATAGGATTGAACAGAATAAGATGCGCAAAATCGCCAAGAGAGA 1234
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1135 ATCAGGGAATATTGCCGATAGGATTGAACAAAATAAGATGCGGAAAATCGCCAAGAGAGA 1194
Query 1235 GAAAAAGCTCCTGCGTCCTGGCTTTGAAGGCCGCAAAGAAGGGTTTATCAATGAAGGTGG 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GAAAAAGCTCCTGCGTCCTGGCTTTGAAGGCCGCAAAGAAGGGTTTATCAATGAAGGTGG 1254
Query 1295 AAACTAGAATTCAAGTCTTCCACACGCCTTTTGTGTTCCAACATTTCAACGATGTGATCC 1354
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1255 AAACTAAAATTCAAATCTTCCATACGCCTTTTGTGTTCCAACATTTCAACGATGTGATCC 1314
Query 1355 TCACAAAGGCTGTGAAGAGGGTTTTTGCACATCTGAAATCGAAAAACAT-----A---TT 1406
|||||||||||||||||||||||| ||||||||||||| ||||||||| | ||
Sbjct 1315 TCACAAAGGCTGTGAAGAGGGTTT--GCACATCTGAAATAGAAAAACATCTTTTACCATT 1372
Query 1407 TTGGGAATTTTCATCTAGTCAAGTCCCTAGCAATAT-TTGTTATCTTCTT-GTTCGTTTT 1464
||||||||||||||||||||||||||||||| |||| || ||||||| || |||||||||
Sbjct 1373 TTGGGAATTTTCATCTAGTCAAGTCCCTAGCTATATCTT-TTATCTT-TTAGTTCGTTTT 1430
Query 1465 ACTTT-GCAGTTTGTAGACTTTTCAGATGTTCCATTTGCTACTCAATGTGTTGTTCCTTA 1523
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1431 -CTTTTGCAGTTTGTAGACTTATCAGATGTTCCATTTGCTACTCAATGTGTTGTTGCTTA 1489
Query 1524 CAGTGAATGCTCTTATCAGGCAGGTTTT 1551
||||||||||||||||||||||||||||
Sbjct 1490 CAGTGAATGCTCTTATCAGGCAGGTTTT 1517
Score = 809 bits (438), Expect = 0.0
Identities = 540/587 (92%), Gaps = 16/587 (3%)
Strand=Plus/Plus
Query 1 AAACCCTAACCACTTTCACGGAA---CCTCTTCATCTTCGTCTCTCTGTCTTTTTTCTTC 57
||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 1 AAACCCTAACCACTTTCACGGAACCTCCTCTTCTTCTTCGTCTCTCTGTC----TTCTTC 56
Query 58 TCTCAACGCCGTTGATTCGCCATCGTCGCTAC---CGATTGTCTTGAGGTTTACGAC-TT 113
|||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 57 TCTCAACGCCGTTGATTCGCCATCGTCGCTACAGGTGATTGTCTTGAGGTTTCCGACTTT 116
Query 114 TTGGACTAATCTCCTCTGTGGAGAGCAATGACTAAAACTCGTGGGACTGATATGACAAAG 173
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 117 TTGG-CTAATCTCCTCTGTGGAGAGCAATGACTAAAACTCGTGGGACTGATATGGCAAAG 175
Query 174 AAAAAGGGTAAACATGTTTCTGAAATGGATTTCAAGACTCATCAGCATACTGAATTTTTC 233
|| |||||||||| || ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 176 AAGAAGGGTAAACGTGATTCTGGATTGGATTTCAAGACTCATCAGCATACTGAATTTTTC 235
Query 234 GATAAGTTGATAGAGCTCA-CGCCTGCTAGATTCTACTTACCTGATGAGACAGAAAGGAA 292
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||
Sbjct 236 GATAAGTTGATAGAGCTCATC-CCTGCAAGATTCTACTTACCTGATGAGACAGAAAGAAA 294
Query 293 ATGGTATCCAGGTCTTAGCAAGGCTCAAAAAGCTAGAGCCAAGaaaaaaaCAAATGACAA 352
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct 295 ATGGTTTCCAGGTCTTAGCAAGGCTCGAAAAGCTAAAGCCAAGAAAATAACAAATGAAAA 354
Query 353 CCTAAAGAAGGCGAAGAGAGATAAGTTGGACCCAGAGAAGTCTGCTTTGACGACTCTCGA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 CCTAAAGAAGGCGAAGAGAGATAAGTTGGACCCAGAGAAGTCTGCTTTGACGACTCTTGA 414
Query 413 TTTACTGAAGGAGAAGATAGAGAAGGAAAGATTGGCTTCACAGAAGCAGAAGCTTAAGAA 472
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 415 TTTACTGAAGGAGAAGATAGAGAAGGAAAGATTGGCTTCACTGAAGCAGAAGCAAAAGAA 474
Query 473 GAAACACGCGGATTTACGGGAGCAGAAGCTAGAGCAGGAAAAA-TCAGGTACTGAGCTTC 531
||||||||||||||||||| |||||||| | || | || |||| || |||||||||||||
Sbjct 475 GAAACACGCGGATTTACGGAAGCAGAAGTTTGACC-GGCAAAACTCTGGTACTGAGCTTC 533
Query 532 CTGATGATGACAGTAAGAAGGAAACAGATAACAACAGACTAAATGAT 578
|||||||||||||| || |||||||||| |||||||||| ||| |||
Sbjct 534 CTGATGATGACAGTGAGGAGGAAACAGACAACAACAGACAAAAGGAT 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5