BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05220.1
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939941 jgi|Araly1|939941|scaffold_600485.1 830 0.0
> Ahg939941 jgi|Araly1|939941|scaffold_600485.1
Length=618
Score = 830 bits (449), Expect = 0.0
Identities = 545/589 (93%), Gaps = 15/589 (3%)
Strand=Plus/Plus
Query 1 AAAACAATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACCCATC-TCAGAG 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 15 AAAACAATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACTCATCTTC-GAG 73
Query 60 GATATATAAAACCTCATCTCCAGTCACGGCAATTCCACAAACAAAGCTGAGCCTTAAAGT 119
| |||||||||||||||| | ||||||||||| ||||| || ||||||||||||||||
Sbjct 74 AACATATAAAACCTCATCTTCGGTCACGGCAATCCCACAGACCAAGCTGAGCCTTAAAGC 133
Query 120 CAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGATCGGATTATGCTGC 179
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 134 CAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGGTCGGGTTATGCGGC 193
Query 180 GGCAATGGAGCCAATTACGCCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGGATATG 239
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 194 GGCAATGGAGCCAATTACACCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGTATATG 253
Query 240 TGGTGGAGAAGTAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAAGAAGCTAT 299
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 254 TGGCGGAGAAGCAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAGGAAGCTAT 313
Query 300 TATGGG-GAATGATGATGGGAGAGATCCTAGAGATTACAATAGAAGAGCAAAGATTTTTG 358
|||||| | |||||||||||||||| |||| |||||||||||||||||| |||||||| |
Sbjct 314 TATGGGTG-ATGATGATGGGAGAGACCCTACAGATTACAATAGAAGAGCGAAGATTTTCG 372
Query 359 ACAAGAGTTCTAAGATCTTCAAGAACT-TAAATGAACAGAGAGATCAGGCTCCTGTTGAT 417
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||
Sbjct 373 ACAAGAGTTCTAAGATCTTCAAGAACTCTAAA-GAACAGAGAGATCAGTCTCCTGTGGAG 431
Query 418 TACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAAG-GACCCTAAAGATTATAA 476
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 432 TACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGG-AGAGACCCTAAAGATTATAA 490
Query 477 CAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACATCAAAGAACAGAG 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 491 CAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATATTCAAGAACATCAAAGAACAGAG 550
Query 537 AGAGCAGTCT-C-C-AGAATGAAT-TACGAAAAT-GTAGTTTGTTTGtt 580
||| |||||| | | ||||| ||| || ||||| || || ||||||||
Sbjct 551 AGACCAGTCTTCTCCAGAATAAATATA--AAAATTGTTGTCTGTTTGTT 597
Score = 165 bits (89), Expect = 4e-40
Identities = 118/132 (89%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 275 TGGAGTGCCTTGAGAAAGAAGCTATTATGGGGAATGATGATGGGAGAGATCCTAGAGATT 334
|||||| ||||||||| |||||||| |||||| ||||||||||||||| |||| |||||
Sbjct 427 TGGAGTACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAGAGACCCTAAAGATT 486
Query 335 ACAATAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACTT-AAATGAA 393
| || ||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||
Sbjct 487 ATAACAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATATTCAAGAACATCAAA-GAA 545
Query 394 CAGAGAGATCAG 405
|||||||| |||
Sbjct 546 CAGAGAGACCAG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24284298129
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5