BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05230.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487314 jgi|Araly1|487314|fgenesh2_kg.6__448__AT5G05230.1 2001 0.0
Ahg942378 jgi|Araly1|942378|scaffold_602922.1 226 4e-58
> Ahg487314 jgi|Araly1|487314|fgenesh2_kg.6__448__AT5G05230.1
Length=1397
Score = 2001 bits (1083), Expect = 0.0
Identities = 1288/1384 (93%), Gaps = 26/1384 (2%)
Strand=Plus/Plus
Query 64 ATCACTCATCTCTCTTCTT-AAAGATTCCTTCTTTGCTTCACGAAACTAAACCGAACCCT 122
||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| ||||||
Sbjct 22 ATCACTCATCTCTCTTCTTCAAA-ATTCCTTCTTTGTTTCACAAAACTAAACCAAACCCT 80
Query 123 GA-TTTCCCTTTCTTACA-TGCTCAATTATCTTCAATTTTCGTTTAATTCTTAGGGGTTT 180
|| ||| | |||||| | |||| |||||||||||||||| |||||||| ||| || |||
Sbjct 81 GATTTTAGC-TTCTTA-ATTGCTTAATTATCTTCAATTTTTGTTTAATTTTTA-GGTTTT 137
Query 181 TAGTCATTTTCGATC----G-TT-CA--ATTCCATGTCCGGCAAAGGT-CTATCTCCGGC 231
|| |||||||||||| | || || |||||||| |||| ||| || |||||| ||||
Sbjct 138 TAATCATTTTCGATCGTTTGATTCCATCATTCCATGGCCGG-AAAAGTGCTATCTTCGGC 196
Query 232 GCCGTTCAACGCGCAGCCGATGATTGTCCAAGATGCTGACCCGTTACGTTTTCGGGTCGG 291
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GCCTTTCAACGCGCCGCCGATGATTGTCCAAGATGCTGACCCGTTACGTTTTCGGGTCGG 256
Query 292 CGAACAGGATCCTAAAACCCGTGAATTCGCTGCCTTTATCGGCG---ACCACCGGTATTT 348
|||||| || ||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 257 CGAACAAGACCCTTAAACCCGTGAATTCGCTGCTTTTATCGGCGACCACCACCGGTATTT 316
Query 349 --C-GCGgcagcagcagcagcagcCGCCGCAGCTAATCCACATCCTCATCTCGAGTTCCG 405
| ||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 317 CGCGGCGGCAGCAGCAGCAGCCGCCGCCGCAGCTAATCCACACCCTCATCTAGAATTCCG 376
Query 406 TCAGAATTTCTACTCGGAGAAACCCATTATCGGAAACCCTAACGACAGTGGTGGATCCGA 465
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 377 TCAGAATTTCTACTCGGAGGAACCCATTATCGGAAACCCTAACGACAGTGGTGGGTCCGA 436
Query 466 CGGCGAGGATGACGTTGACGTGGAAGAAGAAGACGAGGATGATGACTTAGACGGAAACGA 525
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 437 TGGCGAGGATGACATTGACGTGGAAGAAGAAGACGAGGATGATGACATAGACGGAAATGA 496
Query 526 AGGTGACATCGGCATGAACAAAGACGCTGGTGAAGATTCTGTATCTGCAGGAGCTGTGAT 585
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 497 AGGTGACATCGGCATGACCAAAGAAGCTGGTGAAGATTCTGTATCTGCAGGAGCTGTGAT 556
Query 586 AGTGGTTGGACAAGACAACGCAGCTTACTATTCCCAGCATTTTAAGACAGTGGAAGCGAG 645
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||
Sbjct 557 AGTGGTTGGACAAGACAACGCAGCTTACTACTCACAGCATTTTAAGACAATGGAAACGAC 616
Query 646 TTTTGTTTCTAGGAATGAGGAATCATCAATCGCTGCGGATAATGGGTGTGATTTCAGTGG 705
||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 617 TTTTGCTTCTAGGAATGAGGAATCATCTATCGCTGTGGATAATGGGTGTGATTTCAGCGG 676
Query 706 CAGAAGAGACCTTTCTTCTTCTTCGAGCAATTCGATCGAGTCATTGAGAACCATTTTGTC 765
||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 677 CAGAAGAGACCCTTCTTCTTCTTCGAGCAATTCAATCGAGTCCTTGAGGACCATTTTGTC 736
Query 766 TGATCCTACAACAGGCTCTTTGATGGCTGATGCTATGATTTTACCTTGCGGACACACTTT 825
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 737 TGATCCTACAACAGGGTCTTTGATGGCTGATGCTATGATTTTACCTTGAGGACACACTTT 796
Query 826 TGGAGCTGGAGGGATAGAACAAGTTAAACAGATGAAAGCTTGTTGCACATGTTCACAACC 885
|||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 797 TGGAGCTGGAGGAATTGAACAAGTTAAACAGATGAAGGCTTGCTGCACATGTTCACAACC 856
Query 886 AGTCTCAGAAGACTCGATAACCCCAAATCTCACTTTACGAGTTGCGGTACAAGCATTCTG 945
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 AGTCTCAGAAGAGTCAATAACCCCAAATCTCACTTTACGAGTTGCGGTACAAGCATTCTG 916
Query 946 CCGAGAAGAGAATTCACAGTCAAACCATCCATCTAAGAGAAAACGAGAAGGATTTGATCA 1005
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||
Sbjct 917 CCGAGAAGAGAATTCACAGTCAAACCATTCATCGAAGAGAAAACGAGAAGGATCTGATCA 976
Query 1006 AGAGAGACGCGCATTTGGTGTCACGAATCATTCAGGTCGTTCAAGAAACAAAAGTAACCA 1065
||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||| ||
Sbjct 977 AGAGAGACGTGCATTTGGTGTCAAGAATCATTCAGGTCGATCAAGGAACAAAAGTAATCA 1036
Query 1066 TTTCCCATTTGCTGTGGCAGATCGAGTTATAATAAAGGGAAATAAGAGGACACCACCTCG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTCCCATTTGCTGTGGCAGATCGAGTTATAATAAAGGGAAATAAGAGGACACCACCTCG 1096
Query 1126 TTTTGTTGGCCGGGAAGCTGTTGTGACTACTCAATGCTTAAATGGCTGGTATGTGGTGAA 1185
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1097 TTTTGTTGGCCGGGAAGCTGTTGTGACTACTCAATGCTTAAACGGCTGGTATGTGGTGAA 1156
Query 1186 AACACTGGACAACGCAGAGAGTGTGAAGCTTCAGTATCGTTCATTGGCTAAAGCTCCAGA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AACACTGGACAACGCAGAGAGTGTGAAGCTTCAGTATCGTTCATTGGCTAAAGCTCCAGA 1216
Query 1246 AGATCCATCAGCTAAAGCAACACCAAACAAGATGGTCTCTAACTGGCTCTAAACAAACCA 1305
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1217 AGATCCATCAGCCAAAGCAACACCAAACAAGATGGTCTCTAACTGGCTCTAAACAAAGCA 1276
Query 1306 ACCTTGTTTACAACATGATGACACCAGTTTCTGCTCCTAGGTTCGCTATGTAAGAACCCa 1365
||||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 1277 ACCTTGTTTTCAGCATGATGACACCAGTTTCTGCTCCTAGGTTCTCTATGTAAGATCC-A 1335
Query 1366 aaaaaaCTTGTCTACAGATCCAGATCACTGTTACATATTGTAAAATGTAGTAGTTACTCC 1425
|||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1336 AAAA--CTTATTTACAGATCCAGATCACTGTTACATATTGTAAATTGTAGTAGTTACTCC 1393
Query 1426 ATGT 1429
||||
Sbjct 1394 ATGT 1397
> Ahg942378 jgi|Araly1|942378|scaffold_602922.1
Length=433
Score = 226 bits (122), Expect = 4e-58
Identities = 134/140 (96%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 410 AATTTCTACTCGGAGAAACCCATTATCGGAAACCCTAACGACAGTGGTGGATCCGACGGC 469
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AATTTCTACTCGGAGGAACCCATTATCGGAAACCCTAACGACAGTGGTGGATCCGACGGC 140
Query 470 GAGGATGACGTTGACGTGGAAGAAGAAGACGAGGATGATGACTTAGACGGAAACGAAGGT 529
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 141 GAAGATAACGTTGACGTGGAAGAAGAAGACGAGGATGATGACATAGACGGAAATGAATGT 200
Query 530 GACATCGGCATGAACAAAGA 549
||||||||||||||||||||
Sbjct 201 GACATCGGCATGAACAAAGA 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5