BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05240.1
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325157 jgi|Araly1|325157|fgenesh1_pm.C_scaffold_6000377 1962 0.0
> Ahg325157 jgi|Araly1|325157|fgenesh1_pm.C_scaffold_6000377
Length=1689
Score = 1962 bits (1062), Expect = 0.0
Identities = 1388/1535 (90%), Gaps = 63/1535 (4%)
Strand=Plus/Plus
Query 327 ATGGAAGAACACGACGCTGTTTCTGGAGGGTGTTCTCCGATTCCCAGATCCGACTTAAAG 386
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAACACGACAATGTTTCTGGAGGGTTTTCTCCGATTCCCAGATCCGACTTAAAG 60
Query 387 ATCGGCGGCAATGAATTGGATGAAAGACAGGAGTTGAGTAAAATTGAACCTGTTACACCA 446
||||| ||| ||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 61 ATCGGAGGCGCTGAATTGGATGAAAGACTGAAGTTGAGTAAAATTCAACCTGTTACACCA 120
Query 447 ACTCTAAATTCAGGTAACACTGTTCATGGTTCTAAAGACGTTGAAAAAGCCAATGGCATG 506
||||||||||||||| ||||| | |||||| ||| ||||||||||||||| |||
Sbjct 121 ACTCTAAATTCAGGTGGCACTG--C----TTCTAAGGACATTGAAAAAGCCAATGAAATG 174
Query 507 TCTCAAGTTGGTAAAGTTTCAGAGAGTTTTGTTACAGAAGGGAAGAATATTAAGACTGAA 566
|||||||||||||||||||| ||||||||||||| |||||||| || || ||||||| ||
Sbjct 175 TCTCAAGTTGGTAAAGTTTCGGAGAGTTTTGTTAAAGAAGGGATGACTAATAAGACTCAA 234
Query 567 CTGTTGGTGGGTCAAGAGGTTAAGTCTTCTTCCAGTAAGCTTGTTCTCAACACTGATGTT 626
||| | | |||||| |||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 235 CTG-T--TAGGTCAAAAGGTCAAGTCTTCTTCCAGTAAGCTTGTTCTCAACGCAGATGTT 291
Query 627 GATTGTGATAAGCGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 686
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GATTGTGATAAGAGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 351
Query 687 TTGAATGATGATTTAACTTCGGTTTGCTCCTCTAGGATAAGCCAGAAAACTAGTTCAATG 746
||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||
Sbjct 352 TTGAATGATGATTTAACATCGGTTTGCTCGTCCAGGAGAAGCCAGAAAACTAGTTCAATG 411
Query 747 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTTCTGTAGCCAAAAGAGATCCAATGAAG 806
||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||
Sbjct 412 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTCCTGTTGCGAAAAAAGATCCAATGAAG 471
Query 807 GTTTGGACAGAGATGAAACAGAACGGGTATCTCTCTAATCCGAATGGTGGGATTTCAACG 866
|| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 472 GTCTGGACAGAAATGAAACAGAACGGGTATCTCTCTAATCCGAACGGCGGGATTTCAACG 531
Query 867 ACATCAAGTAGCTGTCTCATATCATCTTCTCATGGAGGGATACCGGCTCCAAAGAAACGT 926
|||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct 532 ACATCAAGTAGCTGTCTCGTATCCTCTTCTCATGGAGGGATACCGGCTCCAAGGAAACGT 591
Query 927 GGACGCAAAACCAAGATTAATAATGACGCTGCAGTGGCgaagaagagaaagat--aga-- 982
|||||| ||| |||| ||||| |||||||||| ||||||||||||||||||| |||
Sbjct 592 GGACGC-AAA--AAGAATAATATTGACGCTGCAATGGCGAAGAAGAGAAAGATAGAGATT 648
Query 983 --aaggaaggaagaagTTGACAGGTTTGCTAGGCTTGCTGCTCCTAGCGGACTGCTTAAC 1040
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 649 GCAAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTAGCTGCTCCTAGTGGACTGCTTAAT 708
Query 1041 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 768
Query 1101 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAA---CTATCATTCTACATTGAGGCAT 1157
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 769 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAACTTCTATCATTCTACATTGAGGCAT 828
Query 1158 AGTAATAGTGCAGATGGGAGTCCTAGGAAAAACTTGGGAGA--TG--C-C---TG----C 1205
||||||||||||| ||||||||||||||||||||||||||| || | | || |
Sbjct 829 AGTAATAGTGCAGTTGGGAGTCCTAGGAAAAACTTGGGAGATGTGAACACTAATGCCTTC 888
Query 1206 AGATCTGAATTTT-ACCAAGTATTCCAGTATGCCTTGCCTAAAGATATGTACTCTATGCG 1264
||||||| ||||| |||||| |||| |||||||| |||| |||| || ||||||||||||
Sbjct 889 AGATCTG-ATTTTAACCAAGGATTCAAGTATGCCATGCCAAAAGGTAAGTACTCTATGCG 947
Query 1265 CTACTACGCCGAGAAATGCGCTGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1324
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 CTACTACGATGAGAAATGCGCAGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1007
Query 1325 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGACAGTTCCTTGTCGAGTGAGGACGC 1384
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1008 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGCCAGTTCCTTGTCGAGCGAGGACGC 1067
Query 1385 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACAGTAGCTTCTCAATG 1444
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1068 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACTGTAGCTTCTCAATG 1127
Query 1445 GTTGGAATTGCTTCATCAGGACATCAAAGGCCGTGTTTCTGCTCTTCGACGTAGCAGGAA 1504
|||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||
Sbjct 1128 GTTGGAATTGCTTCATCAGGACCTCAAAGGCCGTGTTTCCGCTCTTCGGCGTAGCAAGAA 1187
Query 1505 GAGGGTTCGTGCAGTTGTCACGATAGAGTTACCTCACTTAATAAGGAAAGAGTTTCCAGC 1564
||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||||| |
Sbjct 1188 GAGGGTTCGTGCAGTTGTCACGACAGAGCTACCTTTCTTGATAACGAAAGAGTTTCCACC 1247
Query 1565 TGATCAAGAAAATGACCCAACTCTACTCCTT-GGTGGGGCTTCGAA-GGCTTCAACAGTC 1622
||||||||||||||||||||| |||| ||| | ||||||||| || |||||||||||||
Sbjct 1248 CGATCAAGAAAATGACCCAACTTTACT-CTTCGATGGGGCTTC-AAGGGCTTCAACAGTC 1305
Query 1623 GATATCCATAAGAGCAGATGGATGACTCTGTTTAAGCAACTCGAACACAAGCTATCAGAA 1682
||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1306 GATGTCCACAAGACCAGATGGATGACTTTGTTTAAGCAACTCGAACACAAGCTCTCAGAA 1365
Query 1683 GAAGAGT--C------------AC-------A-ATT--GGAAAGCTGGTTAAACCAAGTG 1718
||||||| | || | ||| ||||||||||||||||||||||
Sbjct 1366 GAAGAGTCACAATTGTTTGTGAACTTTGAAAATATTCAGGAAAGCTGGTTAAACCAAGTG 1425
Query 1719 AGATATATGCAATCACATTGTGATGAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1778
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1426 AGATATCTGCAATCACATTGTGATCAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1485
Query 1779 AATTTCTTACAGTTAGGGATGCCATTGGACTCTAG 1813
||||||||||| |||||||||||| ||||||||||
Sbjct 1486 AATTTCTTACACTTAGGGATGCCACTGGACTCTAG 1520
Score = 178 bits (96), Expect = 2e-43
Identities = 104/108 (96%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1812 AGAGCTGCAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1871
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 AGAGCTGTAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1641
Query 1872 ATATACTCGACCTGCAGTTTTCTAGAGGAGAACATAACCTGTAGCTGA 1919
|| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1642 ATTTTCTCGACCTGCAGTTTTCTGGAGGAGAACATAACCTGTAGCTGA 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5