BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05240.1 Length=2128 Score E Sequences producing significant alignments: (Bits) Value Ahg325157 jgi|Araly1|325157|fgenesh1_pm.C_scaffold_6000377 1962 0.0 > Ahg325157 jgi|Araly1|325157|fgenesh1_pm.C_scaffold_6000377 Length=1689 Score = 1962 bits (1062), Expect = 0.0 Identities = 1388/1535 (90%), Gaps = 63/1535 (4%) Strand=Plus/Plus Query 327 ATGGAAGAACACGACGCTGTTTCTGGAGGGTGTTCTCCGATTCCCAGATCCGACTTAAAG 386 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGAAGAACACGACAATGTTTCTGGAGGGTTTTCTCCGATTCCCAGATCCGACTTAAAG 60 Query 387 ATCGGCGGCAATGAATTGGATGAAAGACAGGAGTTGAGTAAAATTGAACCTGTTACACCA 446 ||||| ||| ||||||||||||||||| | |||||||||||||| |||||||||||||| Sbjct 61 ATCGGAGGCGCTGAATTGGATGAAAGACTGAAGTTGAGTAAAATTCAACCTGTTACACCA 120 Query 447 ACTCTAAATTCAGGTAACACTGTTCATGGTTCTAAAGACGTTGAAAAAGCCAATGGCATG 506 ||||||||||||||| ||||| | |||||| ||| ||||||||||||||| ||| Sbjct 121 ACTCTAAATTCAGGTGGCACTG--C----TTCTAAGGACATTGAAAAAGCCAATGAAATG 174 Query 507 TCTCAAGTTGGTAAAGTTTCAGAGAGTTTTGTTACAGAAGGGAAGAATATTAAGACTGAA 566 |||||||||||||||||||| ||||||||||||| |||||||| || || ||||||| || Sbjct 175 TCTCAAGTTGGTAAAGTTTCGGAGAGTTTTGTTAAAGAAGGGATGACTAATAAGACTCAA 234 Query 567 CTGTTGGTGGGTCAAGAGGTTAAGTCTTCTTCCAGTAAGCTTGTTCTCAACACTGATGTT 626 ||| | | |||||| |||| |||||||||||||||||||||||||||||| | |||||| Sbjct 235 CTG-T--TAGGTCAAAAGGTCAAGTCTTCTTCCAGTAAGCTTGTTCTCAACGCAGATGTT 291 Query 627 GATTGTGATAAGCGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 686 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GATTGTGATAAGAGAGCTTTGCTTAAGAGATGTGATAATGCGGATGCTGTTTCCAGCTGC 351 Query 687 TTGAATGATGATTTAACTTCGGTTTGCTCCTCTAGGATAAGCCAGAAAACTAGTTCAATG 746 ||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||| Sbjct 352 TTGAATGATGATTTAACATCGGTTTGCTCGTCCAGGAGAAGCCAGAAAACTAGTTCAATG 411 Query 747 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTTCTGTAGCCAAAAGAGATCCAATGAAG 806 ||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| Sbjct 412 GATGTTTATTCAGAGTGTGGGAGTTCCAATGGTCCTGTTGCGAAAAAAGATCCAATGAAG 471 Query 807 GTTTGGACAGAGATGAAACAGAACGGGTATCTCTCTAATCCGAATGGTGGGATTTCAACG 866 || |||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 472 GTCTGGACAGAAATGAAACAGAACGGGTATCTCTCTAATCCGAACGGCGGGATTTCAACG 531 Query 867 ACATCAAGTAGCTGTCTCATATCATCTTCTCATGGAGGGATACCGGCTCCAAAGAAACGT 926 |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| Sbjct 532 ACATCAAGTAGCTGTCTCGTATCCTCTTCTCATGGAGGGATACCGGCTCCAAGGAAACGT 591 Query 927 GGACGCAAAACCAAGATTAATAATGACGCTGCAGTGGCgaagaagagaaagat--aga-- 982 |||||| ||| |||| ||||| |||||||||| ||||||||||||||||||| ||| Sbjct 592 GGACGC-AAA--AAGAATAATATTGACGCTGCAATGGCGAAGAAGAGAAAGATAGAGATT 648 Query 983 --aaggaaggaagaagTTGACAGGTTTGCTAGGCTTGCTGCTCCTAGCGGACTGCTTAAC 1040 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 649 GCAAGGAAGGAAGAAGTTGACAGGTTTGCTAGGCTAGCTGCTCCTAGTGGACTGCTTAAT 708 Query 1041 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 1100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 GAATTGAACCCTGGAATTATTAACCATGTGAGAAACAAAAAGCAAGTACTTTCCATTATC 768 Query 1101 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAA---CTATCATTCTACATTGAGGCAT 1157 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 769 GAAAACATTGTCAAGTCTGAAAGAGATGCTGGAAACTTCTATCATTCTACATTGAGGCAT 828 Query 1158 AGTAATAGTGCAGATGGGAGTCCTAGGAAAAACTTGGGAGA--TG--C-C---TG----C 1205 ||||||||||||| ||||||||||||||||||||||||||| || | | || | Sbjct 829 AGTAATAGTGCAGTTGGGAGTCCTAGGAAAAACTTGGGAGATGTGAACACTAATGCCTTC 888 Query 1206 AGATCTGAATTTT-ACCAAGTATTCCAGTATGCCTTGCCTAAAGATATGTACTCTATGCG 1264 ||||||| ||||| |||||| |||| |||||||| |||| |||| || |||||||||||| Sbjct 889 AGATCTG-ATTTTAACCAAGGATTCAAGTATGCCATGCCAAAAGGTAAGTACTCTATGCG 947 Query 1265 CTACTACGCCGAGAAATGCGCTGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1324 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 948 CTACTACGATGAGAAATGCGCAGATGATGAGTTCAGTGAAGAAAACAATACAGTTAGGTC 1007 Query 1325 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGACAGTTCCTTGTCGAGTGAGGACGC 1384 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1008 GAGGTTTCAGGTGGCAGGTAAGTTCTCAGAAAATGCCAGTTCCTTGTCGAGCGAGGACGC 1067 Query 1385 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACAGTAGCTTCTCAATG 1444 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1068 ATCAGATCTTAACAGTGCTAGTGTTCTCACTGTTAATGCGGCTACTGTAGCTTCTCAATG 1127 Query 1445 GTTGGAATTGCTTCATCAGGACATCAAAGGCCGTGTTTCTGCTCTTCGACGTAGCAGGAA 1504 |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||| Sbjct 1128 GTTGGAATTGCTTCATCAGGACCTCAAAGGCCGTGTTTCCGCTCTTCGGCGTAGCAAGAA 1187 Query 1505 GAGGGTTCGTGCAGTTGTCACGATAGAGTTACCTCACTTAATAAGGAAAGAGTTTCCAGC 1564 ||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||||| | Sbjct 1188 GAGGGTTCGTGCAGTTGTCACGACAGAGCTACCTTTCTTGATAACGAAAGAGTTTCCACC 1247 Query 1565 TGATCAAGAAAATGACCCAACTCTACTCCTT-GGTGGGGCTTCGAA-GGCTTCAACAGTC 1622 ||||||||||||||||||||| |||| ||| | ||||||||| || ||||||||||||| Sbjct 1248 CGATCAAGAAAATGACCCAACTTTACT-CTTCGATGGGGCTTC-AAGGGCTTCAACAGTC 1305 Query 1623 GATATCCATAAGAGCAGATGGATGACTCTGTTTAAGCAACTCGAACACAAGCTATCAGAA 1682 ||| |||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1306 GATGTCCACAAGACCAGATGGATGACTTTGTTTAAGCAACTCGAACACAAGCTCTCAGAA 1365 Query 1683 GAAGAGT--C------------AC-------A-ATT--GGAAAGCTGGTTAAACCAAGTG 1718 ||||||| | || | ||| |||||||||||||||||||||| Sbjct 1366 GAAGAGTCACAATTGTTTGTGAACTTTGAAAATATTCAGGAAAGCTGGTTAAACCAAGTG 1425 Query 1719 AGATATATGCAATCACATTGTGATGAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1778 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1426 AGATATCTGCAATCACATTGTGATCAAGGTCTGCAACACTTGAGCTTGAGTTCTGGTCAG 1485 Query 1779 AATTTCTTACAGTTAGGGATGCCATTGGACTCTAG 1813 ||||||||||| |||||||||||| |||||||||| Sbjct 1486 AATTTCTTACACTTAGGGATGCCACTGGACTCTAG 1520 Score = 178 bits (96), Expect = 2e-43 Identities = 104/108 (96%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1812 AGAGCTGCAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1871 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1582 AGAGCTGTAAACGCGCTGATCTCAGATAAGGATTTAGTCATTAAAGCAGCTGCAGCCTCT 1641 Query 1872 ATATACTCGACCTGCAGTTTTCTAGAGGAGAACATAACCTGTAGCTGA 1919 || | |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1642 ATTTTCTCGACCTGCAGTTTTCTGGAGGAGAACATAACCTGTAGCTGA 1689 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80065694990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5