BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05250.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939945 jgi|Araly1|939945|scaffold_600489.1 1079 0.0
> Ahg939945 jgi|Araly1|939945|scaffold_600489.1
Length=779
Score = 1079 bits (584), Expect = 0.0
Identities = 714/774 (92%), Gaps = 20/774 (3%)
Strand=Plus/Plus
Query 140 AATCTCATCACCGGGGTAAAATTAATGGCGTATGCAAAGATCGGTTACGGTGGAAGTTAT 199
|||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1 AATCTCATCACCGGGG--AAA-T-ATGGCGTATGCAAAAATCGGTTACGGTGGAAGTTAT 56
Query 200 CTAGTGCAACGCGGCATATTGGAGTATCCGTGTGGATCCGATCATAATGCGAGATTGATT 259
||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||| ||
Sbjct 57 CTAGTGCAACGCGGCGCATTGGAGCATCCGTGTGTATCCGATCATAATACGAGATTGCTT 116
Query 260 TCATCGTCGTTTCCGATTAATCTAGGCGGTAATCGACGATCTAGCATCGGAACAATCTCG 319
||||||||||| ||||| | ||||||||||| ||| ||||||||| | ||||| ||| |
Sbjct 117 TCATCGTCGTTCCCGATCAGTCTAGGCGGTACTCGGCGATCTAGCGTTGGAACGATCACA 176
Query 320 GCGTCGATAGGGGAGGCTGTGACTGAGATAGAGAAACAGAGAGGTGGAAGAAGAAGCGGA 379
|||||||||| |||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 177 GCGTCGATAGCGGAGACCGTAACGGAGATAGAGAAACAGAGAGGTGGAAGAAGAAGCGGA 236
Query 380 GGGAGAAGC-----A----GAGGAGATCGTTGGGAGGTGGAAGCGGAGCGTGAGAAGCTA 430
||||||||| | |||||||| || | | |||||| ||||||||||||||||||
Sbjct 237 GGGAGAAGCAGAGGAGGTGGAGGAGATAGTAGAGCGGTGGAGGCGGAGCGTGAGAAGCTA 296
Query 431 GACAGGTGGATGAAGGAATCGGTGACGGAGATCGTTAAGAATTTAAGTGAAGCGCCGTTG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACAGGTGGATGAAGGAATCGGTGACGGAGATCGTTAAGAATTTAAGTGAAGCGCCGTTG 356
Query 491 TTAGTCCATTTGTACACCGGAGATAAGGAGGAGGGAACGGTAGTTGTGATGAAAGCAGAG 550
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 357 TTAGTCCATTTGTACACCGGAGATAAGGAGGAGGGAACGGTGGTTGTGATGAAAGCGGAG 416
Query 551 GAATGGGCGGCGGTGAAGGGGAGGTGGGAGAGAGGAGAGGCGGAGATGCCGGAAGGGATA 610
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 417 GAATGGGCGGCGGTGAAAGGGAGATGGAAGAGAGGAGAGGCGGAGATGCCGGAAGGAATT 476
Query 611 GTGTTCGTGGAGCAGTTAGGAGCGGCGGAGGAGAGTTGTGGCTGTGGTTTTGACGGTGGA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTGTTCGTGGAGCAGTTAGGAGCGGCGGAGGAGAGTTGTGGCTGTGGTTTTGACGGTGGA 536
Query 671 GACGGCACACGTGCGTGGGGGTTGGTGGTGCAAGGGAGAGGAGTTGAGTGTGGGCCGGTT 730
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 537 GACGGCACACGTGCGTGGGGGTTGGTGGTGCAAGGGAAAGCAGTTGAGTGTGGGCCGGTT 596
Query 731 TGTTATCTGCTTAAGACGACCCGTGTAGGGTCAGGGTCAGG---A---TCCGGGTCGGGT 784
|||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||
Sbjct 597 TGTTATCTGCTTAAGACGACCCGTGTCGGGTCAGTGTCAGGGTCAGGGTCCGGGTCGGGT 656
Query 785 TTGGGTATGCGGTGTACGCATTTCTGTTTAGCTAAGGTGTCGAGTTTTAGAGAGACTAGT 844
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGGCTATGCGGTGTACGCATTTCTGTTTAGCTAAGGTGTCGAGTTTTAGAGAGACTAGT 716
Query 845 GAATCTCAGCTTAGGAATTGTTGGCTTGTGGGAAATTGATAATGAAGCC-TTTG 897
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 717 GAATCTCAGCTTAGGAATTGTTGGCTTGTGGGGAATTGATAATGAAGCCCTTTG 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5